Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84926059-89842551

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641 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Mast1 8 84911903 to 84937359 25456 - protein coding gene microtubule associated serine/threonine kinase 1
Cpgi20732 8 84928565 to 84929517 952 CpG island CpG island 20732
Cpgi20733 8 84936778 to 84937682 904 CpG island CpG island 20733
Tssr82207 8 84937347 to 84937367 20 - TSS region transcription start site region 82207
Tssr82208 8 84937378 to 84937392 14 - TSS region transcription start site region 82208
Cpgi20734 8 84944407 to 84944853 446 CpG island CpG island 20734
Cpgi20735 8 84945286 to 84946302 1016 CpG island CpG island 20735
Tssr2630 8 84946048 to 84946083 35 - TSS region transcription start site region 2630
Tssr78473 8 84946987 to 84947012 25 + TSS region transcription start site region 78473
Rtbdn 8 84946991 to 84956603 9612 + protein coding gene retbindin
Tssr78474 8 84948842 to 84948866 24 + TSS region transcription start site region 78474
Tssr78475 8 84949865 to 84949872 7 + TSS region transcription start site region 78475
Tssr78476 8 84949874 to 84949885 11 + TSS region transcription start site region 78476
Tssr78477 8 84949914 to 84949921 7 + TSS region transcription start site region 78477
Tssr78478 8 84950153 to 84950164 11 + TSS region transcription start site region 78478
Rnaseh2a 8 84956610 to 84969375 12765 - protein coding gene ribonuclease H2, large subunit
Cpgi20736 8 84965614 to 84966307 693 CpG island CpG island 20736
Tssr82209 8 84966008 to 84966091 83 - TSS region transcription start site region 82209
Tssr82210 8 84966161 to 84966169 8 - TSS region transcription start site region 82210
Tssr78479 8 84966753 to 84966766 13 + TSS region transcription start site region 78479
Tssr78480 8 84966783 to 84966810 27 + TSS region transcription start site region 78480
Gm49661 8 84967678 to 84969433 1755 - protein coding gene predicted gene, 49661
Tssr78481 8 84968967 to 84968981 14 + TSS region transcription start site region 78481
Cpgi20737 8 84969120 to 84970612 1492 CpG island CpG island 20737
Tssr82211 8 84969412 to 84969481 69 - TSS region transcription start site region 82211
Tssr82212 8 84969490 to 84969527 37 - TSS region transcription start site region 82212
Tssr82213 8 84969531 to 84969559 28 - TSS region transcription start site region 82213
Tssr78482 8 84969618 to 84969636 18 + TSS region transcription start site region 78482
Prdx2 8 84969622 to 84974811 5189 + protein coding gene peroxiredoxin 2
Tssr78483 8 84969637 to 84969653 16 + TSS region transcription start site region 78483
Tssr78484 8 84969656 to 84969679 23 + TSS region transcription start site region 78484
Tssr78485 8 84969686 to 84969706 20 + TSS region transcription start site region 78485
Tssr2631 8 84969708 to 84969715 7 + TSS region transcription start site region 2631
Tssr82214 8 84969762 to 84969779 17 - TSS region transcription start site region 82214
Tssr78486 8 84969790 to 84969818 28 + TSS region transcription start site region 78486
Tssr78487 8 84969824 to 84969862 38 + TSS region transcription start site region 78487
Tssr78488 8 84970068 to 84970093 25 + TSS region transcription start site region 78488
Tssr78489 8 84971227 to 84971243 16 + TSS region transcription start site region 78489
Cpgi20738 8 84976151 to 84979046 2895 CpG island CpG island 20738
Tssr82215 8 84976312 to 84976337 25 - TSS region transcription start site region 82215
Tssr78490 8 84976698 to 84976742 44 + TSS region transcription start site region 78490
Tssr78491 8 84976746 to 84976757 11 + TSS region transcription start site region 78491
Junb 8 84976909 to 84978748 1839 - protein coding gene jun B proto-oncogene
Tssr82216 8 84977502 to 84977550 48 - TSS region transcription start site region 82216
Tssr78492 8 84977764 to 84977798 34 + TSS region transcription start site region 78492
Tssr78493 8 84977856 to 84977907 51 + TSS region transcription start site region 78493
Tssr82217 8 84977874 to 84977888 14 - TSS region transcription start site region 82217
Tssr82218 8 84977993 to 84978000 7 - TSS region transcription start site region 82218
Tssr82219 8 84978010 to 84978025 15 - TSS region transcription start site region 82219
Tssr78494 8 84978016 to 84978026 10 + TSS region transcription start site region 78494
Tssr82220 8 84978068 to 84978080 12 - TSS region transcription start site region 82220
Tssr82221 8 84978101 to 84978116 15 - TSS region transcription start site region 82221
Tssr82222 8 84978122 to 84978143 21 - TSS region transcription start site region 82222
Tssr78495 8 84978167 to 84978171 4 + TSS region transcription start site region 78495
Tssr82223 8 84978451 to 84978463 12 - TSS region transcription start site region 82223
Tssr82224 8 84978524 to 84978540 16 - TSS region transcription start site region 82224
Tssr78496 8 84978583 to 84978605 22 + TSS region transcription start site region 78496
Tssr78497 8 84978613 to 84978629 16 + TSS region transcription start site region 78497
Tssr82225 8 84978709 to 84978724 15 - TSS region transcription start site region 82225
Tssr78498 8 84978972 to 84978987 15 + TSS region transcription start site region 78498
Cpgi20739 8 84979804 to 84980106 302 CpG island CpG island 20739
Tssr78499 8 84980187 to 84980197 10 + TSS region transcription start site region 78499
Tssr78500 8 84980203 to 84980249 46 + TSS region transcription start site region 78500
Tssr78501 8 84980351 to 84980365 14 + TSS region transcription start site region 78501
Tssr82226 8 84980997 to 84981036 39 - TSS region transcription start site region 82226
Tssr82227 8 84981054 to 84981076 22 - TSS region transcription start site region 82227
Tssr82228 8 84985337 to 84985344 7 - TSS region transcription start site region 82228
Cpgi20740 8 84985492 to 84986586 1094 CpG island CpG island 20740
Tssr82229 8 84985807 to 84985844 37 - TSS region transcription start site region 82229
Tssr82230 8 84986066 to 84986080 14 - TSS region transcription start site region 82230
Tssr82231 8 84986146 to 84986219 73 - TSS region transcription start site region 82231
Tssr78502 8 84986344 to 84986353 9 + TSS region transcription start site region 78502
Tssr78503 8 84986363 to 84986380 17 + TSS region transcription start site region 78503
Tssr78504 8 84986447 to 84986461 14 + TSS region transcription start site region 78504
Cpgi20741 8 84990376 to 84991102 726 CpG island CpG island 20741
Tssr78505 8 84990585 to 84990649 64 + TSS region transcription start site region 78505
Hook2 8 84990603 to 85003349 12746 + protein coding gene hook microtubule tethering protein 2
Tssr82232 8 84990870 to 84990901 31 - TSS region transcription start site region 82232
Tssr82233 8 84990911 to 84990927 16 - TSS region transcription start site region 82233
Cpgi20742 8 84995737 to 84996141 404 CpG island CpG island 20742
Tssr78506 8 84995940 to 84995973 33 + TSS region transcription start site region 78506
Tssr78507 8 84995980 to 84995981 1 + TSS region transcription start site region 78507
Tssr78508 8 84995983 to 84995985 2 + TSS region transcription start site region 78508
Tssr78509 8 84997848 to 84997858 10 + TSS region transcription start site region 78509
Cpgi20743 8 84997984 to 84998294 310 CpG island CpG island 20743
Best2 8 85007202 to 85014531 7329 - protein coding gene bestrophin 2
Cpgi20744 8 85007609 to 85008050 441 CpG island CpG island 20744
Cpgi20745 8 85009201 to 85009425 224 CpG island CpG island 20745
Cpgi20746 8 85011066 to 85011844 778 CpG island CpG island 20746
Cpgi20747 8 85013205 to 85013671 466 CpG island CpG island 20747
Asna1 8 85017931 to 85025278 7347 - protein coding gene arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tssr82234 8 85019565 to 85019580 15 - TSS region transcription start site region 82234
Tssr82235 8 85019871 to 85019893 22 - TSS region transcription start site region 82235
Tssr78510 8 85021975 to 85021994 19 + TSS region transcription start site region 78510
Cpgi20748 8 85024831 to 85025246 415 CpG island CpG island 20748
Tssr82236 8 85025231 to 85025238 7 - TSS region transcription start site region 82236
Tssr82237 8 85025268 to 85025296 28 - TSS region transcription start site region 82237
Tssr78511 8 85025640 to 85025649 9 + TSS region transcription start site region 78511
Cpgi20749 8 85026553 to 85027730 1177 CpG island CpG island 20749
Trir 8 85026823 to 85030286 3463 + protein coding gene telomerase RNA component interacting RNase
Tssr78512 8 85026851 to 85026899 48 + TSS region transcription start site region 78512
Cpgi20750 8 85036674 to 85038680 2006 CpG island CpG island 20750
Tssr82238 8 85036678 to 85036734 56 - TSS region transcription start site region 82238
Tssr78513 8 85036886 to 85036902 16 + TSS region transcription start site region 78513
Tssr78514 8 85036906 to 85036925 19 + TSS region transcription start site region 78514
Tnpo2 8 85036915 to 85057583 20668 + protein coding gene transportin 2 (importin 3, karyopherin beta 2b)
Tssr78515 8 85036926 to 85036937 11 + TSS region transcription start site region 78515
Tssr78516 8 85037151 to 85037210 59 + TSS region transcription start site region 78516
Tssr78517 8 85037214 to 85037227 13 + TSS region transcription start site region 78517
Gm25506 8 85050207 to 85050276 69 + snoRNA gene predicted gene, 25506
A230103J11Rik 8 85053160 to 85060460 7300 - lncRNA gene RIKEN cDNA A230103J11 gene
Tssr78518 8 85057222 to 85057268 46 + TSS region transcription start site region 78518
Cpgi20751 8 85059982 to 85060717 735 CpG island CpG island 20751
Fbxw9 8 85060055 to 85067124 7069 + protein coding gene F-box and WD-40 domain protein 9
Tssr78519 8 85060063 to 85060135 72 + TSS region transcription start site region 78519
Tssr2632 8 85060420 to 85060437 17 - TSS region transcription start site region 2632
Tssr82239 8 85060438 to 85060468 30 - TSS region transcription start site region 82239
Mir7070 8 85062086 to 85062171 85 + miRNA gene microRNA 7070
Gm5741 8 85067568 to 85067982 414 - protein coding gene predicted gene 5741
Cpgi20752 8 85071511 to 85072489 978 CpG island CpG island 20752
Tssr78520 8 85071720 to 85071734 14 + TSS region transcription start site region 78520
Tssr78521 8 85071737 to 85071769 32 + TSS region transcription start site region 78521
Dhps 8 85071757 to 85075162 3405 + protein coding gene deoxyhypusine synthase
Tssr78522 8 85071770 to 85071794 24 + TSS region transcription start site region 78522
Tssr82240 8 85072075 to 85072086 11 - TSS region transcription start site region 82240
Tssr82241 8 85072102 to 85072125 23 - TSS region transcription start site region 82241
Wdr83 8 85075035 to 85080746 5711 - protein coding gene WD repeat domain containing 83
Cpgi20753 8 85079933 to 85080711 778 CpG island CpG island 20753
Tssr82242 8 85080652 to 85080668 16 - TSS region transcription start site region 82242
Tssr82243 8 85080679 to 85080721 42 - TSS region transcription start site region 82243
Tssr78523 8 85080849 to 85080854 5 + TSS region transcription start site region 78523
Tssr78524 8 85080939 to 85080977 38 + TSS region transcription start site region 78524
Wdr83os 8 85080963 to 85082339 1376 + protein coding gene WD repeat domain 83 opposite strand
Tssr82244 8 85081319 to 85081350 31 - TSS region transcription start site region 82244
Tssr78525 8 85081425 to 85081468 43 + TSS region transcription start site region 78525
Cpgi20754 8 85083131 to 85083587 456 CpG island CpG island 20754
Tssr78526 8 85083269 to 85083297 28 + TSS region transcription start site region 78526
Man2b1 8 85083270 to 85098282 15012 + protein coding gene mannosidase 2, alpha B1
Tssr78527 8 85083303 to 85083323 20 + TSS region transcription start site region 78527
Tssr78528 8 85083443 to 85083447 4 + TSS region transcription start site region 78528
Tssr78529 8 85084388 to 85084412 24 + TSS region transcription start site region 78529
Tssr78530 8 85084415 to 85084456 41 + TSS region transcription start site region 78530
Tssr78531 8 85084698 to 85084767 69 + TSS region transcription start site region 78531
Tssr78532 8 85085411 to 85085423 12 + TSS region transcription start site region 78532
Tssr78533 8 85085432 to 85085449 17 + TSS region transcription start site region 78533
Tssr78534 8 85085466 to 85085519 53 + TSS region transcription start site region 78534
Tssr78535 8 85086808 to 85086844 36 + TSS region transcription start site region 78535
Tssr78536 8 85086882 to 85086922 40 + TSS region transcription start site region 78536
Tssr78537 8 85087177 to 85087204 27 + TSS region transcription start site region 78537
Tssr78538 8 85087212 to 85087225 13 + TSS region transcription start site region 78538
Tssr82245 8 85087217 to 85087240 23 - TSS region transcription start site region 82245
Tssr78539 8 85087240 to 85087252 12 + TSS region transcription start site region 78539
Tssr78540 8 85090917 to 85090952 35 + TSS region transcription start site region 78540
Tssr78541 8 85091091 to 85091131 40 + TSS region transcription start site region 78541
Cpgi20755 8 85091726 to 85091986 260 CpG island CpG island 20755
Tssr78542 8 85095333 to 85095351 18 + TSS region transcription start site region 78542
Tssr78543 8 85096763 to 85096782 19 + TSS region transcription start site region 78543
Zfp791 8 85108553 to 85123095 14542 - protein coding gene zinc finger protein 791
Cpgi20756 8 85109922 to 85110517 595 CpG island CpG island 20756
Gm23388 8 85112012 to 85112068 56 - miRNA gene predicted gene, 23388
Tssr82246 8 85112110 to 85112120 10 - TSS region transcription start site region 82246
Cpgi20757 8 85119351 to 85119751 400 CpG island CpG island 20757
Tssr82247 8 85119679 to 85119694 15 - TSS region transcription start site region 82247
Gm45317 8 85122728 to 85122950 222 + pseudogene predicted gene 45317
Gm42031 8 85126736 to 85128627 1891 - lincRNA gene predicted gene, 42031
Gm45316 8 85135765 to 85135926 161 + pseudogene predicted gene 45316
Cks1brt 8 85151924 to 85173622 21698 + protein coding gene CDC28 protein kinase 1b, retrogene
Gm33296 8 85152065 to 85159145 7080 - lncRNA gene predicted gene, 33296
Gm18137 8 85154218 to 85154923 705 - pseudogene predicted gene, 18137
Tssr78544 8 85171523 to 85171526 3 + TSS region transcription start site region 78544
Tssr82248 8 85220567 to 85220593 26 - TSS region transcription start site region 82248
Tssr78545 8 85221481 to 85221486 5 + TSS region transcription start site region 78545
Olfr371 8 85230497 to 85231435 938 + protein coding gene olfactory receptor 371
Vps35 8 85260392 to 85299497 39105 - protein coding gene VPS35 retromer complex component
Tssr82249 8 85261077 to 85261092 15 - TSS region transcription start site region 82249
Tssr82250 8 85286395 to 85286416 21 - TSS region transcription start site region 82250
Cpgi20758 8 85298728 to 85300241 1513 CpG island CpG island 20758
Tssr82251 8 85299483 to 85299535 52 - TSS region transcription start site region 82251
Orc6 8 85299632 to 85308278 8646 + protein coding gene origin recognition complex, subunit 6
Tssr78546 8 85299645 to 85299667 22 + TSS region transcription start site region 78546
Tssr78547 8 85299696 to 85299706 10 + TSS region transcription start site region 78547
Tssr82252 8 85299756 to 85299791 35 - TSS region transcription start site region 82252
Tssr78548 8 85299892 to 85299928 36 + TSS region transcription start site region 78548
Gm22336 8 85315140 to 85315246 106 + snRNA gene predicted gene, 22336
Mylk3 8 85324304 to 85386340 62036 - protein coding gene myosin light chain kinase 3
Tssr82253 8 85328014 to 85328019 5 - TSS region transcription start site region 82253
Tssr82254 8 85336398 to 85336442 44 - TSS region transcription start site region 82254
AA672651 8 85339343 to 85340272 929 + antisense lncRNA gene expressed sequence AA672651
Tssr82255 8 85365041 to 85365062 21 - TSS region transcription start site region 82255
Tssr82256 8 85365317 to 85365334 17 - TSS region transcription start site region 82256
Tssr82257 8 85365341 to 85365353 12 - TSS region transcription start site region 82257
Tssr82258 8 85365382 to 85365411 29 - TSS region transcription start site region 82258
Tssr82259 8 85380734 to 85380745 11 - TSS region transcription start site region 82259
Tssr82260 8 85380964 to 85380984 20 - TSS region transcription start site region 82260
Tssr82261 8 85380996 to 85381053 57 - TSS region transcription start site region 82261
Tssr82262 8 85386226 to 85386240 14 - TSS region transcription start site region 82262
Tssr82263 8 85386245 to 85386259 14 - TSS region transcription start site region 82263
Tssr82264 8 85386291 to 85386300 9 - TSS region transcription start site region 82264
Tssr82265 8 85386310 to 85386345 35 - TSS region transcription start site region 82265