Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84853423-84973438

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5911 8 84853959 to 84854609 650 - pseudogene predicted gene 5911
Tssr82201 8 84855673 to 84855675 2 - TSS region transcription start site region 82201
Cpgi20724 8 84856798 to 84857481 683 CpG island CpG island 20724
Tssr78452 8 84856982 to 84857036 54 + TSS region transcription start site region 78452
Farsa 8 84856989 to 84869257 12268 + protein coding gene phenylalanyl-tRNA synthetase, alpha subunit
Tssr78453 8 84867143 to 84867150 7 + TSS region transcription start site region 78453
Mir7069 8 84867947 to 84868008 61 + miRNA gene microRNA 7069
Cpgi20725 8 84871780 to 84872984 1204 CpG island CpG island 20725
Tssr78454 8 84872069 to 84872075 6 + TSS region transcription start site region 78454
Tssr78455 8 84872105 to 84872112 7 + TSS region transcription start site region 78455
Syce2 8 84872111 to 84887446 15335 + protein coding gene synaptonemal complex central element protein 2
Tssr78456 8 84872158 to 84872168 10 + TSS region transcription start site region 78456
Tssr78457 8 84872187 to 84872241 54 + TSS region transcription start site region 78457
Tssr78458 8 84872766 to 84872774 8 + TSS region transcription start site region 78458
Gcdh 8 84886393 to 84893921 7528 - protein coding gene glutaryl-Coenzyme A dehydrogenase
Tssr82202 8 84893158 to 84893169 11 - TSS region transcription start site region 82202
Tssr82203 8 84893277 to 84893333 56 - TSS region transcription start site region 82203
Tssr78459 8 84893379 to 84893384 5 + TSS region transcription start site region 78459
Cpgi20726 8 84893402 to 84893794 392 CpG island CpG island 20726
Tssr82204 8 84893736 to 84893806 70 - TSS region transcription start site region 82204
Tssr82205 8 84893887 to 84893900 13 - TSS region transcription start site region 82205
Tssr82206 8 84893908 to 84893948 40 - TSS region transcription start site region 82206
Tssr78460 8 84893989 to 84894021 32 + TSS region transcription start site region 78460
Gm39213 8 84894018 to 84900154 6136 + lncRNA gene predicted gene, 39213
Klf1 8 84901928 to 84905291 3363 + protein coding gene Kruppel-like factor 1 (erythroid)
Tssr78461 8 84901955 to 84901992 37 + TSS region transcription start site region 78461
Cpgi20727 8 84902587 to 84903757 1170 CpG island CpG island 20727
Tssr78462 8 84903571 to 84903607 36 + TSS region transcription start site region 78462
Cpgi20728 8 84904710 to 84905009 299 CpG island CpG island 20728
Cpgi20729 8 84908477 to 84909300 823 CpG island CpG island 20729
Tssr78463 8 84908613 to 84908673 60 + TSS region transcription start site region 78463
Dnase2a 8 84908624 to 84911461 2837 + protein coding gene deoxyribonuclease II alpha
Tssr78464 8 84908680 to 84908696 16 + TSS region transcription start site region 78464
Tssr78465 8 84908707 to 84908723 16 + TSS region transcription start site region 78465
Tssr78466 8 84908737 to 84908767 30 + TSS region transcription start site region 78466
Tssr78467 8 84909254 to 84909273 19 + TSS region transcription start site region 78467
Tssr78468 8 84911102 to 84911118 16 + TSS region transcription start site region 78468
Tssr78469 8 84911334 to 84911349 15 + TSS region transcription start site region 78469
Mast1 8 84911903 to 84937359 25456 - protein coding gene microtubule associated serine/threonine kinase 1
Cpgi20730 8 84912307 to 84913572 1265 CpG island CpG island 20730
Tssr78470 8 84913320 to 84913353 33 + TSS region transcription start site region 78470
Gm38426 8 84913335 to 84922915 9580 + lncRNA gene predicted gene, 38426
Tssr78471 8 84913369 to 84913414 45 + TSS region transcription start site region 78471
Tssr78472 8 84913423 to 84913438 15 + TSS region transcription start site region 78472
Cpgi20731 8 84917680 to 84918102 422 CpG island CpG island 20731
Gm24197 8 84925525 to 84925633 108 - miRNA gene predicted gene, 24197
Cpgi20732 8 84928565 to 84929517 952 CpG island CpG island 20732
Cpgi20733 8 84936778 to 84937682 904 CpG island CpG island 20733
Tssr82207 8 84937347 to 84937367 20 - TSS region transcription start site region 82207
Tssr82208 8 84937378 to 84937392 14 - TSS region transcription start site region 82208
Cpgi20734 8 84944407 to 84944853 446 CpG island CpG island 20734
Cpgi20735 8 84945286 to 84946302 1016 CpG island CpG island 20735
Tssr2630 8 84946048 to 84946083 35 - TSS region transcription start site region 2630
Tssr78473 8 84946987 to 84947012 25 + TSS region transcription start site region 78473
Rtbdn 8 84946991 to 84956603 9612 + protein coding gene retbindin
Tssr78474 8 84948842 to 84948866 24 + TSS region transcription start site region 78474
Tssr78475 8 84949865 to 84949872 7 + TSS region transcription start site region 78475
Tssr78476 8 84949874 to 84949885 11 + TSS region transcription start site region 78476
Tssr78477 8 84949914 to 84949921 7 + TSS region transcription start site region 78477
Tssr78478 8 84950153 to 84950164 11 + TSS region transcription start site region 78478
Rnaseh2a 8 84956610 to 84969375 12765 - protein coding gene ribonuclease H2, large subunit
Cpgi20736 8 84965614 to 84966307 693 CpG island CpG island 20736
Tssr82209 8 84966008 to 84966091 83 - TSS region transcription start site region 82209
Tssr82210 8 84966161 to 84966169 8 - TSS region transcription start site region 82210
Tssr78479 8 84966753 to 84966766 13 + TSS region transcription start site region 78479
Tssr78480 8 84966783 to 84966810 27 + TSS region transcription start site region 78480
Gm49661 8 84967678 to 84969433 1755 - protein coding gene predicted gene, 49661
Tssr78481 8 84968967 to 84968981 14 + TSS region transcription start site region 78481
Cpgi20737 8 84969120 to 84970612 1492 CpG island CpG island 20737
Tssr82211 8 84969412 to 84969481 69 - TSS region transcription start site region 82211
Tssr82212 8 84969490 to 84969527 37 - TSS region transcription start site region 82212
Tssr82213 8 84969531 to 84969559 28 - TSS region transcription start site region 82213
Tssr78482 8 84969618 to 84969636 18 + TSS region transcription start site region 78482
Prdx2 8 84969622 to 84974811 5189 + protein coding gene peroxiredoxin 2
Tssr78483 8 84969637 to 84969653 16 + TSS region transcription start site region 78483
Tssr78484 8 84969656 to 84969679 23 + TSS region transcription start site region 78484
Tssr78485 8 84969686 to 84969706 20 + TSS region transcription start site region 78485
Tssr2631 8 84969708 to 84969715 7 + TSS region transcription start site region 2631
Tssr82214 8 84969762 to 84969779 17 - TSS region transcription start site region 82214
Tssr78486 8 84969790 to 84969818 28 + TSS region transcription start site region 78486
Tssr78487 8 84969824 to 84969862 38 + TSS region transcription start site region 78487
Tssr78488 8 84970068 to 84970093 25 + TSS region transcription start site region 78488
Tssr78489 8 84971227 to 84971243 16 + TSS region transcription start site region 78489