Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84842568-86142626

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346 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Calr 8 84842088 to 84846931 4843 - protein coding gene calreticulin
Tssr78447 8 84842565 to 84842586 21 + TSS region transcription start site region 78447
Tssr82179 8 84842593 to 84842598 5 - TSS region transcription start site region 82179
Tssr82180 8 84842608 to 84842619 11 - TSS region transcription start site region 82180
Tssr78448 8 84842680 to 84842736 56 + TSS region transcription start site region 78448
Tssr78449 8 84842739 to 84842785 46 + TSS region transcription start site region 78449
Tssr82181 8 84842774 to 84842785 11 - TSS region transcription start site region 82181
Tssr82182 8 84842793 to 84842804 11 - TSS region transcription start site region 82182
Tssr82183 8 84842968 to 84842980 12 - TSS region transcription start site region 82183
Tssr82184 8 84843017 to 84843040 23 - TSS region transcription start site region 82184
Tssr82185 8 84844126 to 84844145 19 - TSS region transcription start site region 82185
Tssr82186 8 84844155 to 84844171 16 - TSS region transcription start site region 82186
Tssr82187 8 84844184 to 84844215 31 - TSS region transcription start site region 82187
Tssr82188 8 84844410 to 84844419 9 - TSS region transcription start site region 82188
Tssr82189 8 84844434 to 84844443 9 - TSS region transcription start site region 82189
Tssr82190 8 84844449 to 84844497 48 - TSS region transcription start site region 82190
Tssr82191 8 84844595 to 84844633 38 - TSS region transcription start site region 82191
Tssr82192 8 84844663 to 84844692 29 - TSS region transcription start site region 82192
Tssr82193 8 84844711 to 84844730 19 - TSS region transcription start site region 82193
Tssr82194 8 84844900 to 84844968 68 - TSS region transcription start site region 82194
Cpgi20723 8 84845882 to 84847511 1629 CpG island CpG island 20723
Tssr82195 8 84845924 to 84845947 23 - TSS region transcription start site region 82195
Tssr82196 8 84845953 to 84845962 9 - TSS region transcription start site region 82196
Tssr2629 8 84846242 to 84846265 23 + TSS region transcription start site region 2629
Tssr82197 8 84846322 to 84846334 12 - TSS region transcription start site region 82197
Tssr82198 8 84846613 to 84846622 9 - TSS region transcription start site region 82198
Tssr82199 8 84846860 to 84846872 12 - TSS region transcription start site region 82199
Tssr82200 8 84847003 to 84847038 35 - TSS region transcription start site region 82200
1700122E12Rik 8 84847188 to 84848415 1227 + lncRNA gene RIKEN cDNA 1700122E12 gene
Tssr78450 8 84847223 to 84847234 11 + TSS region transcription start site region 78450
Tssr78451 8 84847237 to 84847250 13 + TSS region transcription start site region 78451
D8Mit105 8 84850996 to 84851117 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 105
Gm5911 8 84853959 to 84854609 650 - pseudogene predicted gene 5911
Tssr82201 8 84855673 to 84855675 2 - TSS region transcription start site region 82201
Cpgi20724 8 84856798 to 84857481 683 CpG island CpG island 20724
Tssr78452 8 84856982 to 84857036 54 + TSS region transcription start site region 78452
Farsa 8 84856989 to 84869257 12268 + protein coding gene phenylalanyl-tRNA synthetase, alpha subunit
Tssr78453 8 84867143 to 84867150 7 + TSS region transcription start site region 78453
Mir7069 8 84867947 to 84868008 61 + miRNA gene microRNA 7069
Cpgi20725 8 84871780 to 84872984 1204 CpG island CpG island 20725
Tssr78454 8 84872069 to 84872075 6 + TSS region transcription start site region 78454
Tssr78455 8 84872105 to 84872112 7 + TSS region transcription start site region 78455
Syce2 8 84872111 to 84887446 15335 + protein coding gene synaptonemal complex central element protein 2
Tssr78456 8 84872158 to 84872168 10 + TSS region transcription start site region 78456
Tssr78457 8 84872187 to 84872241 54 + TSS region transcription start site region 78457
Tssr78458 8 84872766 to 84872774 8 + TSS region transcription start site region 78458
Gcdh 8 84886393 to 84893921 7528 - protein coding gene glutaryl-Coenzyme A dehydrogenase
Tssr82202 8 84893158 to 84893169 11 - TSS region transcription start site region 82202
Tssr82203 8 84893277 to 84893333 56 - TSS region transcription start site region 82203
Tssr78459 8 84893379 to 84893384 5 + TSS region transcription start site region 78459
Cpgi20726 8 84893402 to 84893794 392 CpG island CpG island 20726
Tssr82204 8 84893736 to 84893806 70 - TSS region transcription start site region 82204
Tssr82205 8 84893887 to 84893900 13 - TSS region transcription start site region 82205
Tssr82206 8 84893908 to 84893948 40 - TSS region transcription start site region 82206
Tssr78460 8 84893989 to 84894021 32 + TSS region transcription start site region 78460
Gm39213 8 84894018 to 84900154 6136 + lncRNA gene predicted gene, 39213
Klf1 8 84901928 to 84905291 3363 + protein coding gene Kruppel-like factor 1 (erythroid)
Tssr78461 8 84901955 to 84901992 37 + TSS region transcription start site region 78461
Cpgi20727 8 84902587 to 84903757 1170 CpG island CpG island 20727
Tssr78462 8 84903571 to 84903607 36 + TSS region transcription start site region 78462
Cpgi20728 8 84904710 to 84905009 299 CpG island CpG island 20728
Cpgi20729 8 84908477 to 84909300 823 CpG island CpG island 20729
Tssr78463 8 84908613 to 84908673 60 + TSS region transcription start site region 78463
Dnase2a 8 84908624 to 84911461 2837 + protein coding gene deoxyribonuclease II alpha
Tssr78464 8 84908680 to 84908696 16 + TSS region transcription start site region 78464
Tssr78465 8 84908707 to 84908723 16 + TSS region transcription start site region 78465
Tssr78466 8 84908737 to 84908767 30 + TSS region transcription start site region 78466
Tssr78467 8 84909254 to 84909273 19 + TSS region transcription start site region 78467
Tssr78468 8 84911102 to 84911118 16 + TSS region transcription start site region 78468
Tssr78469 8 84911334 to 84911349 15 + TSS region transcription start site region 78469
Mast1 8 84911903 to 84937359 25456 - protein coding gene microtubule associated serine/threonine kinase 1
Cpgi20730 8 84912307 to 84913572 1265 CpG island CpG island 20730
Tssr78470 8 84913320 to 84913353 33 + TSS region transcription start site region 78470
Gm38426 8 84913335 to 84922915 9580 + lncRNA gene predicted gene, 38426
Tssr78471 8 84913369 to 84913414 45 + TSS region transcription start site region 78471
Tssr78472 8 84913423 to 84913438 15 + TSS region transcription start site region 78472
Cpgi20731 8 84917680 to 84918102 422 CpG island CpG island 20731
Gm24197 8 84925525 to 84925633 108 - miRNA gene predicted gene, 24197
Cpgi20732 8 84928565 to 84929517 952 CpG island CpG island 20732
Cpgi20733 8 84936778 to 84937682 904 CpG island CpG island 20733
Tssr82207 8 84937347 to 84937367 20 - TSS region transcription start site region 82207
Tssr82208 8 84937378 to 84937392 14 - TSS region transcription start site region 82208
Cpgi20734 8 84944407 to 84944853 446 CpG island CpG island 20734
Cpgi20735 8 84945286 to 84946302 1016 CpG island CpG island 20735
Tssr2630 8 84946048 to 84946083 35 - TSS region transcription start site region 2630
Tssr78473 8 84946987 to 84947012 25 + TSS region transcription start site region 78473
Rtbdn 8 84946991 to 84956603 9612 + protein coding gene retbindin
Tssr78474 8 84948842 to 84948866 24 + TSS region transcription start site region 78474
Tssr78475 8 84949865 to 84949872 7 + TSS region transcription start site region 78475
Tssr78476 8 84949874 to 84949885 11 + TSS region transcription start site region 78476
Tssr78477 8 84949914 to 84949921 7 + TSS region transcription start site region 78477
Tssr78478 8 84950153 to 84950164 11 + TSS region transcription start site region 78478
Rnaseh2a 8 84956610 to 84969375 12765 - protein coding gene ribonuclease H2, large subunit
Cpgi20736 8 84965614 to 84966307 693 CpG island CpG island 20736
Tssr82209 8 84966008 to 84966091 83 - TSS region transcription start site region 82209
Tssr82210 8 84966161 to 84966169 8 - TSS region transcription start site region 82210
Tssr78479 8 84966753 to 84966766 13 + TSS region transcription start site region 78479
Tssr78480 8 84966783 to 84966810 27 + TSS region transcription start site region 78480
Gm49661 8 84967678 to 84969433 1755 - protein coding gene predicted gene, 49661
Tssr78481 8 84968967 to 84968981 14 + TSS region transcription start site region 78481
Cpgi20737 8 84969120 to 84970612 1492 CpG island CpG island 20737
Tssr82211 8 84969412 to 84969481 69 - TSS region transcription start site region 82211
Tssr82212 8 84969490 to 84969527 37 - TSS region transcription start site region 82212
Tssr82213 8 84969531 to 84969559 28 - TSS region transcription start site region 82213
Tssr78482 8 84969618 to 84969636 18 + TSS region transcription start site region 78482
Prdx2 8 84969622 to 84974811 5189 + protein coding gene peroxiredoxin 2
Tssr78483 8 84969637 to 84969653 16 + TSS region transcription start site region 78483
Tssr78484 8 84969656 to 84969679 23 + TSS region transcription start site region 78484
Tssr78485 8 84969686 to 84969706 20 + TSS region transcription start site region 78485
Tssr2631 8 84969708 to 84969715 7 + TSS region transcription start site region 2631
Tssr82214 8 84969762 to 84969779 17 - TSS region transcription start site region 82214
Tssr78486 8 84969790 to 84969818 28 + TSS region transcription start site region 78486
Tssr78487 8 84969824 to 84969862 38 + TSS region transcription start site region 78487
Tssr78488 8 84970068 to 84970093 25 + TSS region transcription start site region 78488
Tssr78489 8 84971227 to 84971243 16 + TSS region transcription start site region 78489
Cpgi20738 8 84976151 to 84979046 2895 CpG island CpG island 20738
Tssr82215 8 84976312 to 84976337 25 - TSS region transcription start site region 82215
Tssr78490 8 84976698 to 84976742 44 + TSS region transcription start site region 78490
Tssr78491 8 84976746 to 84976757 11 + TSS region transcription start site region 78491
Junb 8 84976909 to 84978748 1839 - protein coding gene jun B proto-oncogene
Tssr82216 8 84977502 to 84977550 48 - TSS region transcription start site region 82216
Tssr78492 8 84977764 to 84977798 34 + TSS region transcription start site region 78492
Tssr78493 8 84977856 to 84977907 51 + TSS region transcription start site region 78493
Tssr82217 8 84977874 to 84977888 14 - TSS region transcription start site region 82217
Tssr82218 8 84977993 to 84978000 7 - TSS region transcription start site region 82218
Tssr82219 8 84978010 to 84978025 15 - TSS region transcription start site region 82219
Tssr78494 8 84978016 to 84978026 10 + TSS region transcription start site region 78494
Tssr82220 8 84978068 to 84978080 12 - TSS region transcription start site region 82220
Tssr82221 8 84978101 to 84978116 15 - TSS region transcription start site region 82221
Tssr82222 8 84978122 to 84978143 21 - TSS region transcription start site region 82222
Tssr78495 8 84978167 to 84978171 4 + TSS region transcription start site region 78495
Tssr82223 8 84978451 to 84978463 12 - TSS region transcription start site region 82223
Tssr82224 8 84978524 to 84978540 16 - TSS region transcription start site region 82224
Tssr78496 8 84978583 to 84978605 22 + TSS region transcription start site region 78496
Tssr78497 8 84978613 to 84978629 16 + TSS region transcription start site region 78497
Tssr82225 8 84978709 to 84978724 15 - TSS region transcription start site region 82225
Tssr78498 8 84978972 to 84978987 15 + TSS region transcription start site region 78498
Cpgi20739 8 84979804 to 84980106 302 CpG island CpG island 20739
Tssr78499 8 84980187 to 84980197 10 + TSS region transcription start site region 78499
Tssr78500 8 84980203 to 84980249 46 + TSS region transcription start site region 78500
Tssr78501 8 84980351 to 84980365 14 + TSS region transcription start site region 78501
Tssr82226 8 84980997 to 84981036 39 - TSS region transcription start site region 82226
Tssr82227 8 84981054 to 84981076 22 - TSS region transcription start site region 82227
Tssr82228 8 84985337 to 84985344 7 - TSS region transcription start site region 82228
Cpgi20740 8 84985492 to 84986586 1094 CpG island CpG island 20740
Tssr82229 8 84985807 to 84985844 37 - TSS region transcription start site region 82229
Tssr82230 8 84986066 to 84986080 14 - TSS region transcription start site region 82230
Tssr82231 8 84986146 to 84986219 73 - TSS region transcription start site region 82231
Tssr78502 8 84986344 to 84986353 9 + TSS region transcription start site region 78502
Tssr78503 8 84986363 to 84986380 17 + TSS region transcription start site region 78503
Tssr78504 8 84986447 to 84986461 14 + TSS region transcription start site region 78504
Cpgi20741 8 84990376 to 84991102 726 CpG island CpG island 20741
Tssr78505 8 84990585 to 84990649 64 + TSS region transcription start site region 78505
Hook2 8 84990603 to 85003349 12746 + protein coding gene hook microtubule tethering protein 2
Tssr82232 8 84990870 to 84990901 31 - TSS region transcription start site region 82232
Tssr82233 8 84990911 to 84990927 16 - TSS region transcription start site region 82233
Cpgi20742 8 84995737 to 84996141 404 CpG island CpG island 20742
Tssr78506 8 84995940 to 84995973 33 + TSS region transcription start site region 78506
Tssr78507 8 84995980 to 84995981 1 + TSS region transcription start site region 78507
Tssr78508 8 84995983 to 84995985 2 + TSS region transcription start site region 78508
Tssr78509 8 84997848 to 84997858 10 + TSS region transcription start site region 78509
Cpgi20743 8 84997984 to 84998294 310 CpG island CpG island 20743
Best2 8 85007202 to 85014531 7329 - protein coding gene bestrophin 2
Cpgi20744 8 85007609 to 85008050 441 CpG island CpG island 20744
Cpgi20745 8 85009201 to 85009425 224 CpG island CpG island 20745
Cpgi20746 8 85011066 to 85011844 778 CpG island CpG island 20746
Cpgi20747 8 85013205 to 85013671 466 CpG island CpG island 20747
Asna1 8 85017931 to 85025278 7347 - protein coding gene arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)
Tssr82234 8 85019565 to 85019580 15 - TSS region transcription start site region 82234
Tssr82235 8 85019871 to 85019893 22 - TSS region transcription start site region 82235
Tssr78510 8 85021975 to 85021994 19 + TSS region transcription start site region 78510
Cpgi20748 8 85024831 to 85025246 415 CpG island CpG island 20748
Tssr82236 8 85025231 to 85025238 7 - TSS region transcription start site region 82236
Tssr82237 8 85025268 to 85025296 28 - TSS region transcription start site region 82237
Tssr78511 8 85025640 to 85025649 9 + TSS region transcription start site region 78511
Cpgi20749 8 85026553 to 85027730 1177 CpG island CpG island 20749
Trir 8 85026823 to 85030286 3463 + protein coding gene telomerase RNA component interacting RNase
Tssr78512 8 85026851 to 85026899 48 + TSS region transcription start site region 78512
Cpgi20750 8 85036674 to 85038680 2006 CpG island CpG island 20750
Tssr82238 8 85036678 to 85036734 56 - TSS region transcription start site region 82238
Tssr78513 8 85036886 to 85036902 16 + TSS region transcription start site region 78513
Tssr78514 8 85036906 to 85036925 19 + TSS region transcription start site region 78514
Tnpo2 8 85036915 to 85057583 20668 + protein coding gene transportin 2 (importin 3, karyopherin beta 2b)
Tssr78515 8 85036926 to 85036937 11 + TSS region transcription start site region 78515
Tssr78516 8 85037151 to 85037210 59 + TSS region transcription start site region 78516
Tssr78517 8 85037214 to 85037227 13 + TSS region transcription start site region 78517
Gm25506 8 85050207 to 85050276 69 + snoRNA gene predicted gene, 25506
A230103J11Rik 8 85053160 to 85060460 7300 - lncRNA gene RIKEN cDNA A230103J11 gene
Tssr78518 8 85057222 to 85057268 46 + TSS region transcription start site region 78518
Cpgi20751 8 85059982 to 85060717 735 CpG island CpG island 20751
Fbxw9 8 85060055 to 85067124 7069 + protein coding gene F-box and WD-40 domain protein 9
Tssr78519 8 85060063 to 85060135 72 + TSS region transcription start site region 78519
Tssr2632 8 85060420 to 85060437 17 - TSS region transcription start site region 2632
Tssr82239 8 85060438 to 85060468 30 - TSS region transcription start site region 82239
Mir7070 8 85062086 to 85062171 85 + miRNA gene microRNA 7070
Gm5741 8 85067568 to 85067982 414 - protein coding gene predicted gene 5741
Cpgi20752 8 85071511 to 85072489 978 CpG island CpG island 20752
Tssr78520 8 85071720 to 85071734 14 + TSS region transcription start site region 78520
Tssr78521 8 85071737 to 85071769 32 + TSS region transcription start site region 78521
Dhps 8 85071757 to 85075162 3405 + protein coding gene deoxyhypusine synthase