Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84737608-84947619

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfix 8 84704712 to 84800338 95626 - protein coding gene nuclear factor I/X
Cpgi20711 8 84737529 to 84737908 379 CpG island CpG island 20711
Cpgi20712 8 84742570 to 84742832 262 CpG island CpG island 20712
Tssr82143 8 84746221 to 84746250 29 - TSS region transcription start site region 82143
Tssr82144 8 84746269 to 84746286 17 - TSS region transcription start site region 82144
Tssr82145 8 84746306 to 84746335 29 - TSS region transcription start site region 82145
Tssr82146 8 84771890 to 84771908 18 - TSS region transcription start site region 82146
Cpgi20713 8 84771937 to 84772451 514 CpG island CpG island 20713
Tssr82147 8 84771970 to 84771983 13 - TSS region transcription start site region 82147
Tssr82148 8 84771985 to 84772002 17 - TSS region transcription start site region 82148
Tssr82149 8 84772003 to 84772018 15 - TSS region transcription start site region 82149
Tssr82150 8 84772164 to 84772187 23 - TSS region transcription start site region 82150
Tssr82151 8 84772190 to 84772203 13 - TSS region transcription start site region 82151
Tssr82152 8 84772266 to 84772322 56 - TSS region transcription start site region 82152
Tssr82153 8 84772326 to 84772360 34 - TSS region transcription start site region 82153
Tssr82154 8 84772364 to 84772415 51 - TSS region transcription start site region 82154
Tssr82155 8 84772533 to 84772590 57 - TSS region transcription start site region 82155
Tssr82156 8 84773381 to 84773427 46 - TSS region transcription start site region 82156
Tssr82157 8 84773431 to 84773466 35 - TSS region transcription start site region 82157
Tssr82158 8 84773807 to 84773812 5 - TSS region transcription start site region 82158
Cpgi20714 8 84773865 to 84774159 294 CpG island CpG island 20714
Tssr82159 8 84773979 to 84774036 57 - TSS region transcription start site region 82159
Tssr82160 8 84774121 to 84774142 21 - TSS region transcription start site region 82160
Tssr2628 8 84774475 to 84774479 4 - TSS region transcription start site region 2628
Cpgi20715 8 84784238 to 84785341 1103 CpG island CpG island 20715
Cpgi20716 8 84787743 to 84787898 155 CpG island CpG island 20716
Tssr82161 8 84793300 to 84793315 15 - TSS region transcription start site region 82161
Tssr82162 8 84795317 to 84795321 4 - TSS region transcription start site region 82162
Cpgi20717 8 84798725 to 84801011 2286 CpG island CpG island 20717
Tssr82163 8 84800272 to 84800283 11 - TSS region transcription start site region 82163
Tssr82164 8 84800304 to 84800307 3 - TSS region transcription start site region 82164
Tssr82165 8 84800344 to 84800378 34 - TSS region transcription start site region 82165
Tssr82166 8 84800393 to 84800404 11 - TSS region transcription start site region 82166
Tssr82167 8 84800412 to 84800417 5 - TSS region transcription start site region 82167
Tssr78444 8 84803693 to 84803709 16 + TSS region transcription start site region 78444
Cpgi20718 8 84810874 to 84811246 372 CpG island CpG island 20718
Dand5 8 84815405 to 84822823 7418 - protein coding gene DAN domain family member 5, BMP antagonist
Tssr82168 8 84815624 to 84815634 10 - TSS region transcription start site region 82168
Cpgi20719 8 84816278 to 84816484 206 CpG island CpG island 20719
Cpgi20720 8 84823665 to 84824037 372 CpG island CpG island 20720
Cpgi20721 8 84832075 to 84832762 687 CpG island CpG island 20721
Tssr82169 8 84832225 to 84832272 47 - TSS region transcription start site region 82169
Tssr78445 8 84832257 to 84832295 38 + TSS region transcription start site region 78445
Gadd45gip1 8 84832282 to 84835482 3200 + protein coding gene growth arrest and DNA-damage-inducible, gamma interacting protein 1
Rad23a 8 84834652 to 84840748 6096 - protein coding gene RAD23 homolog A, nucleotide excision repair protein
Tssr82170 8 84835323 to 84835347 24 - TSS region transcription start site region 82170
Tssr82171 8 84835521 to 84835549 28 - TSS region transcription start site region 82171
Tssr82172 8 84838564 to 84838589 25 - TSS region transcription start site region 82172
Tssr82173 8 84838599 to 84838623 24 - TSS region transcription start site region 82173
Tssr82174 8 84838626 to 84838687 61 - TSS region transcription start site region 82174
Cpgi20722 8 84840141 to 84840853 712 CpG island CpG island 20722
Tssr82175 8 84840627 to 84840681 54 - TSS region transcription start site region 82175
Calr 8 84842088 to 84846931 4843 - protein coding gene calreticulin
Tssr82176 8 84842451 to 84842467 16 - TSS region transcription start site region 82176
Tssr78446 8 84842499 to 84842503 4 + TSS region transcription start site region 78446
Tssr82177 8 84842512 to 84842521 9 - TSS region transcription start site region 82177
Tssr82178 8 84842533 to 84842542 9 - TSS region transcription start site region 82178
Tssr78447 8 84842565 to 84842586 21 + TSS region transcription start site region 78447
Tssr82179 8 84842593 to 84842598 5 - TSS region transcription start site region 82179
Tssr82180 8 84842608 to 84842619 11 - TSS region transcription start site region 82180
Tssr78448 8 84842680 to 84842736 56 + TSS region transcription start site region 78448
Tssr78449 8 84842739 to 84842785 46 + TSS region transcription start site region 78449
Tssr82181 8 84842774 to 84842785 11 - TSS region transcription start site region 82181
Tssr82182 8 84842793 to 84842804 11 - TSS region transcription start site region 82182
Tssr82183 8 84842968 to 84842980 12 - TSS region transcription start site region 82183
Tssr82184 8 84843017 to 84843040 23 - TSS region transcription start site region 82184
Tssr82185 8 84844126 to 84844145 19 - TSS region transcription start site region 82185
Tssr82186 8 84844155 to 84844171 16 - TSS region transcription start site region 82186
Tssr82187 8 84844184 to 84844215 31 - TSS region transcription start site region 82187
Tssr82188 8 84844410 to 84844419 9 - TSS region transcription start site region 82188
Tssr82189 8 84844434 to 84844443 9 - TSS region transcription start site region 82189
Tssr82190 8 84844449 to 84844497 48 - TSS region transcription start site region 82190
Tssr82191 8 84844595 to 84844633 38 - TSS region transcription start site region 82191
Tssr82192 8 84844663 to 84844692 29 - TSS region transcription start site region 82192
Tssr82193 8 84844711 to 84844730 19 - TSS region transcription start site region 82193
Tssr82194 8 84844900 to 84844968 68 - TSS region transcription start site region 82194
Cpgi20723 8 84845882 to 84847511 1629 CpG island CpG island 20723
Tssr82195 8 84845924 to 84845947 23 - TSS region transcription start site region 82195
Tssr82196 8 84845953 to 84845962 9 - TSS region transcription start site region 82196
Tssr2629 8 84846242 to 84846265 23 + TSS region transcription start site region 2629
Tssr82197 8 84846322 to 84846334 12 - TSS region transcription start site region 82197
Tssr82198 8 84846613 to 84846622 9 - TSS region transcription start site region 82198
Tssr82199 8 84846860 to 84846872 12 - TSS region transcription start site region 82199
Tssr82200 8 84847003 to 84847038 35 - TSS region transcription start site region 82200
1700122E12Rik 8 84847188 to 84848415 1227 + lncRNA gene RIKEN cDNA 1700122E12 gene
Tssr78450 8 84847223 to 84847234 11 + TSS region transcription start site region 78450
Tssr78451 8 84847237 to 84847250 13 + TSS region transcription start site region 78451
D8Mit105 8 84850996 to 84851117 121 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 105
Gm5911 8 84853959 to 84854609 650 - pseudogene predicted gene 5911
Tssr82201 8 84855673 to 84855675 2 - TSS region transcription start site region 82201
Cpgi20724 8 84856798 to 84857481 683 CpG island CpG island 20724
Tssr78452 8 84856982 to 84857036 54 + TSS region transcription start site region 78452
Farsa 8 84856989 to 84869257 12268 + protein coding gene phenylalanyl-tRNA synthetase, alpha subunit
Tssr78453 8 84867143 to 84867150 7 + TSS region transcription start site region 78453
Mir7069 8 84867947 to 84868008 61 + miRNA gene microRNA 7069
Cpgi20725 8 84871780 to 84872984 1204 CpG island CpG island 20725
Tssr78454 8 84872069 to 84872075 6 + TSS region transcription start site region 78454
Tssr78455 8 84872105 to 84872112 7 + TSS region transcription start site region 78455
Syce2 8 84872111 to 84887446 15335 + protein coding gene synaptonemal complex central element protein 2
Tssr78456 8 84872158 to 84872168 10 + TSS region transcription start site region 78456
Tssr78457 8 84872187 to 84872241 54 + TSS region transcription start site region 78457
Tssr78458 8 84872766 to 84872774 8 + TSS region transcription start site region 78458
Gcdh 8 84886393 to 84893921 7528 - protein coding gene glutaryl-Coenzyme A dehydrogenase
Tssr82202 8 84893158 to 84893169 11 - TSS region transcription start site region 82202
Tssr82203 8 84893277 to 84893333 56 - TSS region transcription start site region 82203
Tssr78459 8 84893379 to 84893384 5 + TSS region transcription start site region 78459
Cpgi20726 8 84893402 to 84893794 392 CpG island CpG island 20726
Tssr82204 8 84893736 to 84893806 70 - TSS region transcription start site region 82204
Tssr82205 8 84893887 to 84893900 13 - TSS region transcription start site region 82205
Tssr82206 8 84893908 to 84893948 40 - TSS region transcription start site region 82206
Tssr78460 8 84893989 to 84894021 32 + TSS region transcription start site region 78460
Gm39213 8 84894018 to 84900154 6136 + lncRNA gene predicted gene, 39213
Klf1 8 84901928 to 84905291 3363 + protein coding gene Kruppel-like factor 1 (erythroid)
Tssr78461 8 84901955 to 84901992 37 + TSS region transcription start site region 78461
Cpgi20727 8 84902587 to 84903757 1170 CpG island CpG island 20727
Tssr78462 8 84903571 to 84903607 36 + TSS region transcription start site region 78462
Cpgi20728 8 84904710 to 84905009 299 CpG island CpG island 20728
Cpgi20729 8 84908477 to 84909300 823 CpG island CpG island 20729
Tssr78463 8 84908613 to 84908673 60 + TSS region transcription start site region 78463
Dnase2a 8 84908624 to 84911461 2837 + protein coding gene deoxyribonuclease II alpha
Tssr78464 8 84908680 to 84908696 16 + TSS region transcription start site region 78464
Tssr78465 8 84908707 to 84908723 16 + TSS region transcription start site region 78465
Tssr78466 8 84908737 to 84908767 30 + TSS region transcription start site region 78466
Tssr78467 8 84909254 to 84909273 19 + TSS region transcription start site region 78467
Tssr78468 8 84911102 to 84911118 16 + TSS region transcription start site region 78468
Tssr78469 8 84911334 to 84911349 15 + TSS region transcription start site region 78469
Mast1 8 84911903 to 84937359 25456 - protein coding gene microtubule associated serine/threonine kinase 1
Cpgi20730 8 84912307 to 84913572 1265 CpG island CpG island 20730
Tssr78470 8 84913320 to 84913353 33 + TSS region transcription start site region 78470
Gm38426 8 84913335 to 84922915 9580 + lncRNA gene predicted gene, 38426
Tssr78471 8 84913369 to 84913414 45 + TSS region transcription start site region 78471
Tssr78472 8 84913423 to 84913438 15 + TSS region transcription start site region 78472
Cpgi20731 8 84917680 to 84918102 422 CpG island CpG island 20731
Gm24197 8 84925525 to 84925633 108 - miRNA gene predicted gene, 24197
Cpgi20732 8 84928565 to 84929517 952 CpG island CpG island 20732
Cpgi20733 8 84936778 to 84937682 904 CpG island CpG island 20733
Tssr82207 8 84937347 to 84937367 20 - TSS region transcription start site region 82207
Tssr82208 8 84937378 to 84937392 14 - TSS region transcription start site region 82208
Cpgi20734 8 84944407 to 84944853 446 CpG island CpG island 20734
Cpgi20735 8 84945286 to 84946302 1016 CpG island CpG island 20735
Tssr2630 8 84946048 to 84946083 35 - TSS region transcription start site region 2630
Tssr78473 8 84946987 to 84947012 25 + TSS region transcription start site region 78473
Rtbdn 8 84946991 to 84956603 9612 + protein coding gene retbindin