Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84434831-84705143

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna1a 8 84388440 to 84640246 251806 + protein coding gene calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
Tssr78400 8 84468672 to 84468677 5 + TSS region transcription start site region 78400
Cpgi20692 8 84511653 to 84511882 229 CpG island CpG island 20692
Tssr78401 8 84533410 to 84533442 32 + TSS region transcription start site region 78401
Cpgi20693 8 84558863 to 84560034 1171 CpG island CpG island 20693
Tssr2626 8 84559030 to 84559039 9 + TSS region transcription start site region 2626
Cpgi20694 8 84566047 to 84566460 413 CpG island CpG island 20694
Cpgi20695 8 84567672 to 84567936 264 CpG island CpG island 20695
Cpgi20696 8 84569831 to 84570143 312 CpG island CpG island 20696
Gm32854 8 84583040 to 84588733 5693 - lncRNA gene predicted gene, 32854
Tssr82100 8 84587602 to 84587621 19 - TSS region transcription start site region 82100
Tssr82101 8 84587622 to 84587633 11 - TSS region transcription start site region 82101
Tssr78402 8 84589667 to 84589678 11 + TSS region transcription start site region 78402
Tssr78403 8 84597113 to 84597150 37 + TSS region transcription start site region 78403
Tssr78404 8 84597869 to 84597890 21 + TSS region transcription start site region 78404
Tssr78405 8 84597907 to 84597920 13 + TSS region transcription start site region 78405
Cpgi20697 8 84600581 to 84600903 322 CpG island CpG island 20697
Tssr78406 8 84601360 to 84601377 17 + TSS region transcription start site region 78406
Tssr78407 8 84601420 to 84601440 20 + TSS region transcription start site region 78407
Tssr78408 8 84601463 to 84601477 14 + TSS region transcription start site region 78408
Cpgi20698 8 84601549 to 84602147 598 CpG island CpG island 20698
Gm16183 8 84611202 to 84617184 5982 - antisense lncRNA gene predicted gene 16183
Tssr78409 8 84615483 to 84615499 16 + TSS region transcription start site region 78409
Cpgi20699 8 84617033 to 84617364 331 CpG island CpG island 20699
Tssr78410 8 84623636 to 84623686 50 + TSS region transcription start site region 78410
Gm39212 8 84624087 to 84639255 15168 - lncRNA gene predicted gene, 39212
Tssr78411 8 84636340 to 84636390 50 + TSS region transcription start site region 78411
Tssr78412 8 84636398 to 84636417 19 + TSS region transcription start site region 78412
Cpgi20700 8 84638494 to 84639964 1470 CpG island CpG island 20700
Tssr78413 8 84638519 to 84638537 18 + TSS region transcription start site region 78413
Tssr78414 8 84638538 to 84638592 54 + TSS region transcription start site region 78414
Tssr78415 8 84638596 to 84638611 15 + TSS region transcription start site region 78415
Tssr78416 8 84638750 to 84638776 26 + TSS region transcription start site region 78416
Tssr82102 8 84638883 to 84638901 18 - TSS region transcription start site region 82102
Tssr78417 8 84638962 to 84639017 55 + TSS region transcription start site region 78417
Gm39211 8 84642119 to 84643273 1154 + lncRNA gene predicted gene, 39211
Tssr82103 8 84642840 to 84642848 8 - TSS region transcription start site region 82103
Tssr78418 8 84650365 to 84650373 8 + TSS region transcription start site region 78418
Tssr78419 8 84653443 to 84653449 6 + TSS region transcription start site region 78419
Cpgi20701 8 84656667 to 84657036 369 CpG island CpG island 20701
Tssr82104 8 84656893 to 84656920 27 - TSS region transcription start site region 82104
Tssr78420 8 84657948 to 84657951 3 + TSS region transcription start site region 78420
Tssr78421 8 84660198 to 84660205 7 + TSS region transcription start site region 78421
Tssr78422 8 84660213 to 84660224 11 + TSS region transcription start site region 78422
Tssr78423 8 84660403 to 84660422 19 + TSS region transcription start site region 78423
Ier2 8 84661331 to 84662852 1521 - protein coding gene immediate early response 2
Cpgi20702 8 84661407 to 84663173 1766 CpG island CpG island 20702
Tssr82105 8 84661541 to 84661555 14 - TSS region transcription start site region 82105
Tssr82106 8 84661590 to 84661605 15 - TSS region transcription start site region 82106
Tssr82107 8 84662841 to 84662859 18 - TSS region transcription start site region 82107
Tssr78424 8 84662999 to 84663006 7 + TSS region transcription start site region 78424
Tssr82108 8 84663008 to 84663015 7 - TSS region transcription start site region 82108
Tssr82109 8 84663027 to 84663071 44 - TSS region transcription start site region 82109
4930447I22Rik 8 84663268 to 84665025 1757 unclassified gene RIKEN cDNA 4930447I22 gene
Tssr82110 8 84663921 to 84663955 34 - TSS region transcription start site region 82110
Cpgi20703 8 84664035 to 84664511 476 CpG island CpG island 20703
Tssr78425 8 84664211 to 84664238 27 + TSS region transcription start site region 78425
Tssr78426 8 84664243 to 84664257 14 + TSS region transcription start site region 78426
Tssr78427 8 84664538 to 84664565 27 + TSS region transcription start site region 78427
Cpgi20704 8 84664847 to 84665571 724 CpG island CpG island 20704
Tssr2627 8 84665098 to 84665138 40 + TSS region transcription start site region 2627
Gm26664 8 84665128 to 84669406 4278 + lincRNA gene predicted gene, 26664
Nacc1 8 84670483 to 84687862 17379 - protein coding gene nucleus accumbens associated 1, BEN and BTB (POZ) domain containing
Tssr78428 8 84676406 to 84676433 27 + TSS region transcription start site region 78428
Tssr78429 8 84686300 to 84686348 48 + TSS region transcription start site region 78429
Trmt1 8 84686312 to 84699808 13496 + protein coding gene tRNA methyltransferase 1
Cpgi20705 8 84686809 to 84688036 1227 CpG island CpG island 20705
Tssr82111 8 84687078 to 84687099 21 - TSS region transcription start site region 82111
Tssr82112 8 84687546 to 84687571 25 - TSS region transcription start site region 82112
Tssr82113 8 84687604 to 84687619 15 - TSS region transcription start site region 82113
Tssr82114 8 84687839 to 84687884 45 - TSS region transcription start site region 82114
Tssr82115 8 84687899 to 84687910 11 - TSS region transcription start site region 82115
Tssr78430 8 84689269 to 84689303 34 + TSS region transcription start site region 78430
Tssr78431 8 84689308 to 84689318 10 + TSS region transcription start site region 78431
Cpgi20706 8 84689481 to 84690049 568 CpG island CpG island 20706
Tssr78432 8 84699160 to 84699178 18 + TSS region transcription start site region 78432
Tssr78433 8 84701430 to 84701497 67 + TSS region transcription start site region 78433
Lyl1 8 84701457 to 84704715 3258 + protein coding gene lymphoblastomic leukemia 1
Cpgi20707 8 84701566 to 84702009 443 CpG island CpG island 20707
Tssr82116 8 84701676 to 84701726 50 - TSS region transcription start site region 82116
Tssr78434 8 84701762 to 84701769 7 + TSS region transcription start site region 78434
Tssr78435 8 84701771 to 84701798 27 + TSS region transcription start site region 78435
Tssr78436 8 84701803 to 84701827 24 + TSS region transcription start site region 78436
Tssr78437 8 84701872 to 84701882 10 + TSS region transcription start site region 78437
Tssr78438 8 84701907 to 84701910 3 + TSS region transcription start site region 78438
Tssr78439 8 84703391 to 84703415 24 + TSS region transcription start site region 78439
Cpgi20708 8 84703667 to 84704592 925 CpG island CpG island 20708
Nfix 8 84704712 to 84800338 95626 - protein coding gene nuclear factor I/X
Cpgi20709 8 84705063 to 84705950 887 CpG island CpG island 20709
Tssr82117 8 84705126 to 84705138 12 - TSS region transcription start site region 82117