Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84205017-84625032

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr78377 8 84205229 to 84205235 6 + TSS region transcription start site region 78377
Mirc11 8 84208518 to 84208921 403 complex/cluster/region microRNA cluster 11, including Mir23a through Mir24-2
Mir23a 8 84208518 to 84208592 74 + miRNA gene microRNA 23a
Mir27a 8 84208672 to 84208758 86 + miRNA gene microRNA 27a
Mir24-2 8 84208815 to 84208921 106 + miRNA gene microRNA 24-2
Mir3074-2 8 84208825 to 84208907 82 - miRNA gene microRNA 3074-2
Tssr78378 8 84208893 to 84208902 9 + TSS region transcription start site region 78378
Gm26532 8 84208920 to 84209609 689 + lincRNA gene predicted gene, 26532
Cpgi20685 8 84210016 to 84210610 594 CpG island CpG island 20685
Zswim4 8 84210942 to 84237042 26100 - protein coding gene zinc finger SWIM-type containing 4
nmf242 8 84220392 to 92685497 8465105 heritable phenotypic marker neuroscience mutagenesis facility, 242
D8Mit264 8 84220392 to 84220514 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 264
Tssr82092 8 84223445 to 84223462 17 - TSS region transcription start site region 82092
Gm32760 8 84235112 to 84238340 3228 + lncRNA gene predicted gene, 32760
Cpgi20686 8 84236470 to 84237596 1126 CpG island CpG island 20686
Tssr2625 8 84237008 to 84237014 6 - TSS region transcription start site region 2625
Tssr82093 8 84237046 to 84237061 15 - TSS region transcription start site region 82093
Tssr78379 8 84237312 to 84237331 19 + TSS region transcription start site region 78379
D8Ertd738e 8 84246238 to 84249719 3481 - protein coding gene DNA segment, Chr 8, ERATO Doi 738, expressed
Cpgi20687 8 84249242 to 84249886 644 CpG island CpG island 20687
Tssr82094 8 84249630 to 84249641 11 - TSS region transcription start site region 82094
Tssr82095 8 84249666 to 84249681 15 - TSS region transcription start site region 82095
Tssr82096 8 84249701 to 84249733 32 - TSS region transcription start site region 82096
Mri1 8 84250576 to 84257324 6748 - protein coding gene methylthioribose-1-phosphate isomerase 1
Cpgi20688 8 84256530 to 84257640 1110 CpG island CpG island 20688
Tssr82097 8 84257262 to 84257301 39 - TSS region transcription start site region 82097
Tssr82098 8 84257311 to 84257325 14 - TSS region transcription start site region 82098
Ccdc130 8 84257795 to 84270380 12585 - protein coding gene coiled-coil domain containing 130
Cpgi20689 8 84270065 to 84270671 606 CpG island CpG island 20689
Tssr82099 8 84270358 to 84270405 47 - TSS region transcription start site region 82099
Gm18677 8 84280876 to 84281604 728 - pseudogene predicted gene, 18677
Gm45608 8 84302963 to 84303733 770 - pseudogene predicted gene 45608
Cpgi20690 8 84338520 to 84338972 452 CpG island CpG island 20690
Tssr78380 8 84338594 to 84338608 14 + TSS region transcription start site region 78380
Tssr78381 8 84338614 to 84338634 20 + TSS region transcription start site region 78381
Tssr78382 8 84338638 to 84338658 20 + TSS region transcription start site region 78382
Tssr78383 8 84338675 to 84338681 6 + TSS region transcription start site region 78383
Tssr78384 8 84338811 to 84338828 17 + TSS region transcription start site region 78384
Tssr78385 8 84356740 to 84356754 14 + TSS region transcription start site region 78385
Tssr78386 8 84356775 to 84356787 12 + TSS region transcription start site region 78386
Gm23626 8 84380449 to 84380581 132 - snoRNA gene predicted gene, 23626
Cacna1a 8 84388440 to 84640246 251806 + protein coding gene calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
D8Mit78 8 84410244 to 84410387 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 78
Cpgi20691 8 84414103 to 84416408 2305 CpG island CpG island 20691
Tssr78387 8 84414263 to 84414274 11 + TSS region transcription start site region 78387
Tssr78388 8 84414323 to 84414334 11 + TSS region transcription start site region 78388
Tssr78389 8 84414383 to 84414475 92 + TSS region transcription start site region 78389
Tssr78390 8 84414655 to 84414671 16 + TSS region transcription start site region 78390
Tssr78391 8 84414685 to 84414725 40 + TSS region transcription start site region 78391
Tssr78392 8 84414740 to 84414751 11 + TSS region transcription start site region 78392
Tssr78393 8 84415017 to 84415032 15 + TSS region transcription start site region 78393
Tssr78394 8 84415348 to 84415392 44 + TSS region transcription start site region 78394
Tssr78395 8 84415409 to 84415424 15 + TSS region transcription start site region 78395
Tssr78396 8 84415488 to 84415498 10 + TSS region transcription start site region 78396
Tssr78397 8 84415826 to 84415836 10 + TSS region transcription start site region 78397
Tssr78398 8 84416549 to 84416555 6 + TSS region transcription start site region 78398
Tssr78399 8 84420870 to 84420875 5 + TSS region transcription start site region 78399
Tssr78400 8 84468672 to 84468677 5 + TSS region transcription start site region 78400
Cpgi20692 8 84511653 to 84511882 229 CpG island CpG island 20692
Tssr78401 8 84533410 to 84533442 32 + TSS region transcription start site region 78401
Cpgi20693 8 84558863 to 84560034 1171 CpG island CpG island 20693
Tssr2626 8 84559030 to 84559039 9 + TSS region transcription start site region 2626
Cpgi20694 8 84566047 to 84566460 413 CpG island CpG island 20694
Cpgi20695 8 84567672 to 84567936 264 CpG island CpG island 20695
Cpgi20696 8 84569831 to 84570143 312 CpG island CpG island 20696
Gm32854 8 84583040 to 84588733 5693 - lncRNA gene predicted gene, 32854
Tssr82100 8 84587602 to 84587621 19 - TSS region transcription start site region 82100
Tssr82101 8 84587622 to 84587633 11 - TSS region transcription start site region 82101
Tssr78402 8 84589667 to 84589678 11 + TSS region transcription start site region 78402
Tssr78403 8 84597113 to 84597150 37 + TSS region transcription start site region 78403
Tssr78404 8 84597869 to 84597890 21 + TSS region transcription start site region 78404
Tssr78405 8 84597907 to 84597920 13 + TSS region transcription start site region 78405
Cpgi20697 8 84600581 to 84600903 322 CpG island CpG island 20697
Tssr78406 8 84601360 to 84601377 17 + TSS region transcription start site region 78406
Tssr78407 8 84601420 to 84601440 20 + TSS region transcription start site region 78407
Tssr78408 8 84601463 to 84601477 14 + TSS region transcription start site region 78408
Cpgi20698 8 84601549 to 84602147 598 CpG island CpG island 20698
Gm16183 8 84611202 to 84617184 5982 - antisense lncRNA gene predicted gene 16183
Tssr78409 8 84615483 to 84615499 16 + TSS region transcription start site region 78409
Cpgi20699 8 84617033 to 84617364 331 CpG island CpG island 20699
Tssr78410 8 84623636 to 84623686 50 + TSS region transcription start site region 78410
Gm39212 8 84624087 to 84639255 15168 - lncRNA gene predicted gene, 39212