Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84082828-84197931

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rfx1 8 84066834 to 84096992 30158 + protein coding gene regulatory factor X, 1 (influences HLA class II expression)
Tssr78355 8 84084074 to 84084093 19 + TSS region transcription start site region 78355
Tssr78356 8 84084094 to 84084106 12 + TSS region transcription start site region 78356
Cpgi20674 8 84084551 to 84084974 423 CpG island CpG island 20674
Mir709 8 84086099 to 84086186 87 + miRNA gene microRNA 709
Dcaf15 8 84097072 to 84104768 7696 - protein coding gene DDB1 and CUL4 associated factor 15
Gm39210 8 84099436 to 84100525 1089 + lncRNA gene predicted gene, 39210
Cpgi20675 8 84104122 to 84105231 1109 CpG island CpG island 20675
Tssr82064 8 84104744 to 84104759 15 - TSS region transcription start site region 82064
Tssr82065 8 84104778 to 84104793 15 - TSS region transcription start site region 82065
Tssr82066 8 84105006 to 84105017 11 - TSS region transcription start site region 82066
Tssr78357 8 84125892 to 84125932 40 + TSS region transcription start site region 78357
Tssr78358 8 84125980 to 84125999 19 + TSS region transcription start site region 78358
Podnl1 8 84125989 to 84132527 6538 + protein coding gene podocan-like 1
Tssr78359 8 84126024 to 84126045 21 + TSS region transcription start site region 78359
Tssr78360 8 84127102 to 84127113 11 + TSS region transcription start site region 78360
Tssr78361 8 84127125 to 84127139 14 + TSS region transcription start site region 78361
Tssr78362 8 84127514 to 84127525 11 + TSS region transcription start site region 78362
Tssr78363 8 84127538 to 84127558 20 + TSS region transcription start site region 78363
Tssr78364 8 84127795 to 84127806 11 + TSS region transcription start site region 78364
Tssr78365 8 84128579 to 84128597 18 + TSS region transcription start site region 78365
Tssr78366 8 84130253 to 84130262 9 + TSS region transcription start site region 78366
Cpgi20676 8 84130630 to 84131255 625 CpG island CpG island 20676
Cc2d1a 8 84132828 to 84147931 15103 - protein coding gene coiled-coil and C2 domain containing 1A
Tssr82067 8 84134058 to 84134098 40 - TSS region transcription start site region 82067
Cpgi20677 8 84147482 to 84148418 936 CpG island CpG island 20677
Tssr82068 8 84147767 to 84147786 19 - TSS region transcription start site region 82068
Tssr82069 8 84147858 to 84147942 84 - TSS region transcription start site region 82069
4930432K21Rik 8 84148025 to 84172590 24565 + protein coding gene RIKEN cDNA 4930432K21 gene
Tssr78367 8 84148074 to 84148086 12 + TSS region transcription start site region 78367
Tssr78368 8 84148304 to 84148321 17 + TSS region transcription start site region 78368
Gm25110 8 84156757 to 84156877 120 + miRNA gene predicted gene, 25110
Nanos3 8 84173730 to 84176945 3215 - protein coding gene nanos C2HC-type zinc finger 3
Mirc16 8 84178716 to 84178961 245 complex/cluster/region microRNA cluster 16, including Mir181d through Mir181c
Mir181d 8 84178716 to 84178787 71 - miRNA gene microRNA 181d
Mir181c 8 84178873 to 84178961 88 - miRNA gene microRNA 181c
Tssr82070 8 84182160 to 84182164 4 - TSS region transcription start site region 82070
Cpgi20678 8 84183375 to 84184426 1051 CpG island CpG island 20678
Tssr82071 8 84183865 to 84183916 51 - TSS region transcription start site region 82071
Tssr82072 8 84184062 to 84184086 24 - TSS region transcription start site region 82072
Tssr82073 8 84184089 to 84184114 25 - TSS region transcription start site region 82073
Cpgi20679 8 84186752 to 84187268 516 CpG island CpG island 20679
Tssr78369 8 84189977 to 84189980 3 + TSS region transcription start site region 78369
Tssr82074 8 84192060 to 84192108 48 - TSS region transcription start site region 82074
Cpgi20680 8 84192185 to 84193031 846 CpG island CpG island 20680
Tssr78370 8 84192265 to 84192285 20 + TSS region transcription start site region 78370
Tssr82075 8 84192664 to 84192680 16 - TSS region transcription start site region 82075
Gm26887 8 84192774 to 84197667 4893 - lincRNA gene predicted gene, 26887
Cpgi20681 8 84197381 to 84198073 692 CpG island CpG island 20681
Tssr78371 8 84197404 to 84197416 12 + TSS region transcription start site region 78371
Tssr2623 8 84197467 to 84197478 11 - TSS region transcription start site region 2623
Tssr82076 8 84197579 to 84197593 14 - TSS region transcription start site region 82076
Tssr82077 8 84197675 to 84197680 5 - TSS region transcription start site region 82077
Tssr82078 8 84197925 to 84197959 34 - TSS region transcription start site region 82078