Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:84024778-84184793

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Palm3 8 84021471 to 84030295 8824 + protein coding gene paralemmin 3
Cpgi20670 8 84025851 to 84026684 833 CpG island CpG island 20670
Tssr78345 8 84026059 to 84026086 27 + TSS region transcription start site region 78345
Tssr78346 8 84026149 to 84026169 20 + TSS region transcription start site region 78346
Il27ra 8 84030294 to 84042589 12295 - protein coding gene interleukin 27 receptor, alpha
Tssr82059 8 84034421 to 84034424 3 - TSS region transcription start site region 82059
Cpgi20671 8 84042172 to 84042694 522 CpG island CpG island 20671
Tssr82060 8 84042540 to 84042599 59 - TSS region transcription start site region 82060
Rln3 8 84043067 to 84044979 1912 - protein coding gene relaxin 3
Cpgi20672 8 84044748 to 84045039 291 CpG island CpG island 20672
Tssr82061 8 84044982 to 84044995 13 - TSS region transcription start site region 82061
Gm10643 8 84063561 to 84065137 1576 - protein coding gene predicted gene 10643
C330011M18Rik 8 84065236 to 84067287 2051 - antisense lncRNA gene RIKEN cDNA C330011M18 gene
Cpgi20673 8 84066087 to 84067591 1504 CpG island CpG island 20673
Tssr78347 8 84066384 to 84066398 14 + TSS region transcription start site region 78347
Tssr78348 8 84066419 to 84066431 12 + TSS region transcription start site region 78348
Tssr82062 8 84066432 to 84066450 18 - TSS region transcription start site region 82062
Tssr78349 8 84066824 to 84066882 58 + TSS region transcription start site region 78349
Rfx1 8 84066834 to 84096992 30158 + protein coding gene regulatory factor X, 1 (influences HLA class II expression)
Tssr78350 8 84066902 to 84066919 17 + TSS region transcription start site region 78350
Tssr82063 8 84067283 to 84067288 5 - TSS region transcription start site region 82063
Tssr78351 8 84073858 to 84073874 16 + TSS region transcription start site region 78351
Tssr78352 8 84073876 to 84073899 23 + TSS region transcription start site region 78352
Tssr78353 8 84073900 to 84073919 19 + TSS region transcription start site region 78353
Tssr78354 8 84073939 to 84073946 7 + TSS region transcription start site region 78354
Tssr78355 8 84084074 to 84084093 19 + TSS region transcription start site region 78355
Tssr78356 8 84084094 to 84084106 12 + TSS region transcription start site region 78356
Cpgi20674 8 84084551 to 84084974 423 CpG island CpG island 20674
Mir709 8 84086099 to 84086186 87 + miRNA gene microRNA 709
Dcaf15 8 84097072 to 84104768 7696 - protein coding gene DDB1 and CUL4 associated factor 15
Gm39210 8 84099436 to 84100525 1089 + lncRNA gene predicted gene, 39210
Cpgi20675 8 84104122 to 84105231 1109 CpG island CpG island 20675
Tssr82064 8 84104744 to 84104759 15 - TSS region transcription start site region 82064
Tssr82065 8 84104778 to 84104793 15 - TSS region transcription start site region 82065
Tssr82066 8 84105006 to 84105017 11 - TSS region transcription start site region 82066
Tssr78357 8 84125892 to 84125932 40 + TSS region transcription start site region 78357
Tssr78358 8 84125980 to 84125999 19 + TSS region transcription start site region 78358
Podnl1 8 84125989 to 84132527 6538 + protein coding gene podocan-like 1
Tssr78359 8 84126024 to 84126045 21 + TSS region transcription start site region 78359
Tssr78360 8 84127102 to 84127113 11 + TSS region transcription start site region 78360
Tssr78361 8 84127125 to 84127139 14 + TSS region transcription start site region 78361
Tssr78362 8 84127514 to 84127525 11 + TSS region transcription start site region 78362
Tssr78363 8 84127538 to 84127558 20 + TSS region transcription start site region 78363
Tssr78364 8 84127795 to 84127806 11 + TSS region transcription start site region 78364
Tssr78365 8 84128579 to 84128597 18 + TSS region transcription start site region 78365
Tssr78366 8 84130253 to 84130262 9 + TSS region transcription start site region 78366
Cpgi20676 8 84130630 to 84131255 625 CpG island CpG island 20676
Cc2d1a 8 84132828 to 84147931 15103 - protein coding gene coiled-coil and C2 domain containing 1A
Tssr82067 8 84134058 to 84134098 40 - TSS region transcription start site region 82067
Cpgi20677 8 84147482 to 84148418 936 CpG island CpG island 20677
Tssr82068 8 84147767 to 84147786 19 - TSS region transcription start site region 82068
Tssr82069 8 84147858 to 84147942 84 - TSS region transcription start site region 82069
4930432K21Rik 8 84148025 to 84172590 24565 + protein coding gene RIKEN cDNA 4930432K21 gene
Tssr78367 8 84148074 to 84148086 12 + TSS region transcription start site region 78367
Tssr78368 8 84148304 to 84148321 17 + TSS region transcription start site region 78368
Gm25110 8 84156757 to 84156877 120 + miRNA gene predicted gene, 25110
Nanos3 8 84173730 to 84176945 3215 - protein coding gene nanos C2HC-type zinc finger 3
Mirc16 8 84178716 to 84178961 245 complex/cluster/region microRNA cluster 16, including Mir181d through Mir181c
Mir181d 8 84178716 to 84178787 71 - miRNA gene microRNA 181d
Mir181c 8 84178873 to 84178961 88 - miRNA gene microRNA 181c
Tssr82070 8 84182160 to 84182164 4 - TSS region transcription start site region 82070
Cpgi20678 8 84183375 to 84184426 1051 CpG island CpG island 20678
Tssr82071 8 84183865 to 84183916 51 - TSS region transcription start site region 82071
Tssr82072 8 84184062 to 84184086 24 - TSS region transcription start site region 82072
Tssr82073 8 84184089 to 84184114 25 - TSS region transcription start site region 82073