Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83992540-84092599

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkaca 8 83972993 to 83996443 23450 + protein coding gene protein kinase, cAMP dependent, catalytic, alpha
Tssr78326 8 83995413 to 83995430 17 + TSS region transcription start site region 78326
Tssr78327 8 83995473 to 83995480 7 + TSS region transcription start site region 78327
Tssr78328 8 83995726 to 83995744 18 + TSS region transcription start site region 78328
Tssr78329 8 83995877 to 83995891 14 + TSS region transcription start site region 78329
Tssr78330 8 83996340 to 83996371 31 + TSS region transcription start site region 78330
Cpgi20665 8 83996471 to 83999207 2736 CpG island CpG island 20665
Tssr82055 8 83996863 to 83996891 28 - TSS region transcription start site region 82055
Tssr78331 8 83997107 to 83997123 16 + TSS region transcription start site region 78331
Tssr78332 8 83997208 to 83997216 8 + TSS region transcription start site region 78332
Tssr78333 8 83997252 to 83997265 13 + TSS region transcription start site region 78333
Tssr78334 8 83997302 to 83997315 13 + TSS region transcription start site region 78334
Tssr78335 8 83997316 to 83997369 53 + TSS region transcription start site region 78335
Tssr78336 8 83997370 to 83997381 11 + TSS region transcription start site region 78336
Tssr78337 8 83997515 to 83997516 1 + TSS region transcription start site region 78337
Tssr78338 8 83997613 to 83997654 41 + TSS region transcription start site region 78338
Samd1 8 83997672 to 84000386 2714 + protein coding gene sterile alpha motif domain containing 1
Cpgi20666 8 84001230 to 84001897 667 CpG island CpG island 20666
Tssr78339 8 84001434 to 84001441 7 + TSS region transcription start site region 78339
Tssr78340 8 84001455 to 84001468 13 + TSS region transcription start site region 78340
Tssr78341 8 84001495 to 84001500 5 + TSS region transcription start site region 78341
1700067K01Rik 8 84001502 to 84004770 3268 + protein coding gene RIKEN cDNA 1700067K01 gene
Tssr78342 8 84003106 to 84003118 12 + TSS region transcription start site region 78342
Cpgi20667 8 84004491 to 84004979 488 CpG island CpG island 20667
Mir8111 8 84005628 to 84005764 136 + miRNA gene microRNA 8111
2210011C24Rik 8 84010228 to 84011720 1492 - protein coding gene RIKEN cDNA 2210011C24 gene
Cpgi20668 8 84010702 to 84013085 2383 CpG island CpG island 20668
Tssr82056 8 84011476 to 84011486 10 - TSS region transcription start site region 82056
Mir1199 8 84011515 to 84011633 118 - miRNA gene microRNA 1199
Tssr82057 8 84012123 to 84012169 46 - TSS region transcription start site region 82057
Cpgi20669 8 84021162 to 84021393 231 CpG island CpG island 20669
Tssr78343 8 84021362 to 84021374 12 + TSS region transcription start site region 78343
Tssr78344 8 84021444 to 84021475 31 + TSS region transcription start site region 78344
Palm3 8 84021471 to 84030295 8824 + protein coding gene paralemmin 3
Tssr82058 8 84023249 to 84023295 46 - TSS region transcription start site region 82058
Cpgi20670 8 84025851 to 84026684 833 CpG island CpG island 20670
Tssr78345 8 84026059 to 84026086 27 + TSS region transcription start site region 78345
Tssr78346 8 84026149 to 84026169 20 + TSS region transcription start site region 78346
Il27ra 8 84030294 to 84042589 12295 - protein coding gene interleukin 27 receptor, alpha
Tssr82059 8 84034421 to 84034424 3 - TSS region transcription start site region 82059
Cpgi20671 8 84042172 to 84042694 522 CpG island CpG island 20671
Tssr82060 8 84042540 to 84042599 59 - TSS region transcription start site region 82060
Rln3 8 84043067 to 84044979 1912 - protein coding gene relaxin 3
Cpgi20672 8 84044748 to 84045039 291 CpG island CpG island 20672
Tssr82061 8 84044982 to 84044995 13 - TSS region transcription start site region 82061
Gm10643 8 84063561 to 84065137 1576 - protein coding gene predicted gene 10643
C330011M18Rik 8 84065236 to 84067287 2051 - antisense lncRNA gene RIKEN cDNA C330011M18 gene
Cpgi20673 8 84066087 to 84067591 1504 CpG island CpG island 20673
Tssr78347 8 84066384 to 84066398 14 + TSS region transcription start site region 78347
Tssr78348 8 84066419 to 84066431 12 + TSS region transcription start site region 78348
Tssr82062 8 84066432 to 84066450 18 - TSS region transcription start site region 82062
Tssr78349 8 84066824 to 84066882 58 + TSS region transcription start site region 78349
Rfx1 8 84066834 to 84096992 30158 + protein coding gene regulatory factor X, 1 (influences HLA class II expression)
Tssr78350 8 84066902 to 84066919 17 + TSS region transcription start site region 78350
Tssr82063 8 84067283 to 84067288 5 - TSS region transcription start site region 82063
Tssr78351 8 84073858 to 84073874 16 + TSS region transcription start site region 78351
Tssr78352 8 84073876 to 84073899 23 + TSS region transcription start site region 78352
Tssr78353 8 84073900 to 84073919 19 + TSS region transcription start site region 78353
Tssr78354 8 84073939 to 84073946 7 + TSS region transcription start site region 78354
Tssr78355 8 84084074 to 84084093 19 + TSS region transcription start site region 78355
Tssr78356 8 84084094 to 84084106 12 + TSS region transcription start site region 78356
Cpgi20674 8 84084551 to 84084974 423 CpG island CpG island 20674
Mir709 8 84086099 to 84086186 87 + miRNA gene microRNA 709