Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83965792-89275916

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1089 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Asf1b 8 83955694 to 83970195 14501 + protein coding gene anti-silencing function 1B histone chaperone
Cpgi20664 8 83972090 to 83973901 1811 CpG island CpG island 20664
Tssr78314 8 83972951 to 83973028 77 + TSS region transcription start site region 78314
Prkaca 8 83972993 to 83996443 23450 + protein coding gene protein kinase, cAMP dependent, catalytic, alpha
Tssr78315 8 83973048 to 83973059 11 + TSS region transcription start site region 78315
Tssr78316 8 83976863 to 83976864 1 + TSS region transcription start site region 78316
Tssr78317 8 83976866 to 83976878 12 + TSS region transcription start site region 78317
Tssr78318 8 83976879 to 83976899 20 + TSS region transcription start site region 78318
Tssr78319 8 83977045 to 83977061 16 + TSS region transcription start site region 78319
Tssr78320 8 83978424 to 83978461 37 + TSS region transcription start site region 78320
Tssr78321 8 83980512 to 83980552 40 + TSS region transcription start site region 78321
Tssr78322 8 83982795 to 83982803 8 + TSS region transcription start site region 78322
Tssr78323 8 83989465 to 83989479 14 + TSS region transcription start site region 78323
Tssr78324 8 83989530 to 83989549 19 + TSS region transcription start site region 78324
Tssr78325 8 83989554 to 83989575 21 + TSS region transcription start site region 78325
Tssr78326 8 83995413 to 83995430 17 + TSS region transcription start site region 78326
Tssr78327 8 83995473 to 83995480 7 + TSS region transcription start site region 78327
Tssr78328 8 83995726 to 83995744 18 + TSS region transcription start site region 78328
Tssr78329 8 83995877 to 83995891 14 + TSS region transcription start site region 78329
Tssr78330 8 83996340 to 83996371 31 + TSS region transcription start site region 78330
Cpgi20665 8 83996471 to 83999207 2736 CpG island CpG island 20665
Tssr82055 8 83996863 to 83996891 28 - TSS region transcription start site region 82055
Tssr78331 8 83997107 to 83997123 16 + TSS region transcription start site region 78331
Tssr78332 8 83997208 to 83997216 8 + TSS region transcription start site region 78332
Tssr78333 8 83997252 to 83997265 13 + TSS region transcription start site region 78333
Tssr78334 8 83997302 to 83997315 13 + TSS region transcription start site region 78334
Tssr78335 8 83997316 to 83997369 53 + TSS region transcription start site region 78335
Tssr78336 8 83997370 to 83997381 11 + TSS region transcription start site region 78336
Tssr78337 8 83997515 to 83997516 1 + TSS region transcription start site region 78337
Tssr78338 8 83997613 to 83997654 41 + TSS region transcription start site region 78338
Samd1 8 83997672 to 84000386 2714 + protein coding gene sterile alpha motif domain containing 1
Cpgi20666 8 84001230 to 84001897 667 CpG island CpG island 20666
Tssr78339 8 84001434 to 84001441 7 + TSS region transcription start site region 78339
Tssr78340 8 84001455 to 84001468 13 + TSS region transcription start site region 78340
Tssr78341 8 84001495 to 84001500 5 + TSS region transcription start site region 78341
1700067K01Rik 8 84001502 to 84004770 3268 + protein coding gene RIKEN cDNA 1700067K01 gene
Tssr78342 8 84003106 to 84003118 12 + TSS region transcription start site region 78342
Cpgi20667 8 84004491 to 84004979 488 CpG island CpG island 20667
Mir8111 8 84005628 to 84005764 136 + miRNA gene microRNA 8111
2210011C24Rik 8 84010228 to 84011720 1492 - protein coding gene RIKEN cDNA 2210011C24 gene
Cpgi20668 8 84010702 to 84013085 2383 CpG island CpG island 20668
Tssr82056 8 84011476 to 84011486 10 - TSS region transcription start site region 82056
Mir1199 8 84011515 to 84011633 118 - miRNA gene microRNA 1199
Tssr82057 8 84012123 to 84012169 46 - TSS region transcription start site region 82057
Cpgi20669 8 84021162 to 84021393 231 CpG island CpG island 20669
Tssr78343 8 84021362 to 84021374 12 + TSS region transcription start site region 78343
Tssr78344 8 84021444 to 84021475 31 + TSS region transcription start site region 78344
Palm3 8 84021471 to 84030295 8824 + protein coding gene paralemmin 3
Tssr82058 8 84023249 to 84023295 46 - TSS region transcription start site region 82058
Cpgi20670 8 84025851 to 84026684 833 CpG island CpG island 20670
Tssr78345 8 84026059 to 84026086 27 + TSS region transcription start site region 78345
Tssr78346 8 84026149 to 84026169 20 + TSS region transcription start site region 78346
Il27ra 8 84030294 to 84042589 12295 - protein coding gene interleukin 27 receptor, alpha
Tssr82059 8 84034421 to 84034424 3 - TSS region transcription start site region 82059
Cpgi20671 8 84042172 to 84042694 522 CpG island CpG island 20671
Tssr82060 8 84042540 to 84042599 59 - TSS region transcription start site region 82060
Rln3 8 84043067 to 84044979 1912 - protein coding gene relaxin 3
Cpgi20672 8 84044748 to 84045039 291 CpG island CpG island 20672
Tssr82061 8 84044982 to 84044995 13 - TSS region transcription start site region 82061
Gm10643 8 84063561 to 84065137 1576 - protein coding gene predicted gene 10643
C330011M18Rik 8 84065236 to 84067287 2051 - antisense lncRNA gene RIKEN cDNA C330011M18 gene
Cpgi20673 8 84066087 to 84067591 1504 CpG island CpG island 20673
Tssr78347 8 84066384 to 84066398 14 + TSS region transcription start site region 78347
Tssr78348 8 84066419 to 84066431 12 + TSS region transcription start site region 78348
Tssr82062 8 84066432 to 84066450 18 - TSS region transcription start site region 82062
Tssr78349 8 84066824 to 84066882 58 + TSS region transcription start site region 78349
Rfx1 8 84066834 to 84096992 30158 + protein coding gene regulatory factor X, 1 (influences HLA class II expression)
Tssr78350 8 84066902 to 84066919 17 + TSS region transcription start site region 78350
Tssr82063 8 84067283 to 84067288 5 - TSS region transcription start site region 82063
Tssr78351 8 84073858 to 84073874 16 + TSS region transcription start site region 78351
Tssr78352 8 84073876 to 84073899 23 + TSS region transcription start site region 78352
Tssr78353 8 84073900 to 84073919 19 + TSS region transcription start site region 78353
Tssr78354 8 84073939 to 84073946 7 + TSS region transcription start site region 78354
Tssr78355 8 84084074 to 84084093 19 + TSS region transcription start site region 78355
Tssr78356 8 84084094 to 84084106 12 + TSS region transcription start site region 78356
Cpgi20674 8 84084551 to 84084974 423 CpG island CpG island 20674
Mir709 8 84086099 to 84086186 87 + miRNA gene microRNA 709
Dcaf15 8 84097072 to 84104768 7696 - protein coding gene DDB1 and CUL4 associated factor 15
Gm39210 8 84099436 to 84100525 1089 + lncRNA gene predicted gene, 39210
Cpgi20675 8 84104122 to 84105231 1109 CpG island CpG island 20675
Tssr82064 8 84104744 to 84104759 15 - TSS region transcription start site region 82064
Tssr82065 8 84104778 to 84104793 15 - TSS region transcription start site region 82065
Tssr82066 8 84105006 to 84105017 11 - TSS region transcription start site region 82066
Tssr78357 8 84125892 to 84125932 40 + TSS region transcription start site region 78357
Tssr78358 8 84125980 to 84125999 19 + TSS region transcription start site region 78358
Podnl1 8 84125989 to 84132527 6538 + protein coding gene podocan-like 1
Tssr78359 8 84126024 to 84126045 21 + TSS region transcription start site region 78359
Tssr78360 8 84127102 to 84127113 11 + TSS region transcription start site region 78360
Tssr78361 8 84127125 to 84127139 14 + TSS region transcription start site region 78361
Tssr78362 8 84127514 to 84127525 11 + TSS region transcription start site region 78362
Tssr78363 8 84127538 to 84127558 20 + TSS region transcription start site region 78363
Tssr78364 8 84127795 to 84127806 11 + TSS region transcription start site region 78364
Tssr78365 8 84128579 to 84128597 18 + TSS region transcription start site region 78365
Tssr78366 8 84130253 to 84130262 9 + TSS region transcription start site region 78366
Cpgi20676 8 84130630 to 84131255 625 CpG island CpG island 20676
Cc2d1a 8 84132828 to 84147931 15103 - protein coding gene coiled-coil and C2 domain containing 1A
Tssr82067 8 84134058 to 84134098 40 - TSS region transcription start site region 82067
Cpgi20677 8 84147482 to 84148418 936 CpG island CpG island 20677
Tssr82068 8 84147767 to 84147786 19 - TSS region transcription start site region 82068
Tssr82069 8 84147858 to 84147942 84 - TSS region transcription start site region 82069
4930432K21Rik 8 84148025 to 84172590 24565 + protein coding gene RIKEN cDNA 4930432K21 gene
Tssr78367 8 84148074 to 84148086 12 + TSS region transcription start site region 78367
Tssr78368 8 84148304 to 84148321 17 + TSS region transcription start site region 78368
Gm25110 8 84156757 to 84156877 120 + miRNA gene predicted gene, 25110
Nanos3 8 84173730 to 84176945 3215 - protein coding gene nanos C2HC-type zinc finger 3
Mir181d 8 84178716 to 84178787 71 - miRNA gene microRNA 181d
Mirc16 8 84178716 to 84178961 245 complex/cluster/region microRNA cluster 16, including Mir181d through Mir181c
Mir181c 8 84178873 to 84178961 88 - miRNA gene microRNA 181c
Tssr82070 8 84182160 to 84182164 4 - TSS region transcription start site region 82070
Cpgi20678 8 84183375 to 84184426 1051 CpG island CpG island 20678
Tssr82071 8 84183865 to 84183916 51 - TSS region transcription start site region 82071
Tssr82072 8 84184062 to 84184086 24 - TSS region transcription start site region 82072
Tssr82073 8 84184089 to 84184114 25 - TSS region transcription start site region 82073
Cpgi20679 8 84186752 to 84187268 516 CpG island CpG island 20679
Tssr78369 8 84189977 to 84189980 3 + TSS region transcription start site region 78369
Tssr82074 8 84192060 to 84192108 48 - TSS region transcription start site region 82074
Cpgi20680 8 84192185 to 84193031 846 CpG island CpG island 20680
Tssr78370 8 84192265 to 84192285 20 + TSS region transcription start site region 78370
Tssr82075 8 84192664 to 84192680 16 - TSS region transcription start site region 82075
Gm26887 8 84192774 to 84197667 4893 - lincRNA gene predicted gene, 26887
Cpgi20681 8 84197381 to 84198073 692 CpG island CpG island 20681
Tssr78371 8 84197404 to 84197416 12 + TSS region transcription start site region 78371
Tssr2623 8 84197467 to 84197478 11 - TSS region transcription start site region 2623
Tssr82076 8 84197579 to 84197593 14 - TSS region transcription start site region 82076
Tssr82077 8 84197675 to 84197680 5 - TSS region transcription start site region 82077
Tssr82078 8 84197925 to 84197959 34 - TSS region transcription start site region 82078
Tssr82079 8 84198351 to 84198364 13 - TSS region transcription start site region 82079
Cpgi20682 8 84198363 to 84198812 449 CpG island CpG island 20682
Tssr82080 8 84198368 to 84198394 26 - TSS region transcription start site region 82080
Tssr82081 8 84198403 to 84198423 20 - TSS region transcription start site region 82081
Tssr2624 8 84198763 to 84198786 23 + TSS region transcription start site region 2624
Cpgi20683 8 84200142 to 84201854 1712 CpG island CpG island 20683
Tssr82082 8 84200617 to 84200655 38 - TSS region transcription start site region 82082
Tssr82083 8 84200730 to 84200750 20 - TSS region transcription start site region 82083
Tssr78372 8 84200835 to 84200846 11 + TSS region transcription start site region 78372
Tssr78373 8 84200860 to 84200875 15 + TSS region transcription start site region 78373
Gm37352 8 84200869 to 84203049 2180 + unclassified gene predicted gene, 37352
Tssr78374 8 84200931 to 84200947 16 + TSS region transcription start site region 78374
Tssr82084 8 84201624 to 84201668 44 - TSS region transcription start site region 82084
Tssr78375 8 84201766 to 84201793 27 + TSS region transcription start site region 78375
Tssr82085 8 84201961 to 84201970 9 - TSS region transcription start site region 82085
Tssr82086 8 84201983 to 84201992 9 - TSS region transcription start site region 82086
Tssr82087 8 84202012 to 84202017 5 - TSS region transcription start site region 82087
Cpgi20684 8 84203424 to 84203833 409 CpG island CpG island 20684
Tssr82088 8 84203483 to 84203495 12 - TSS region transcription start site region 82088
Tssr82089 8 84203521 to 84203527 6 - TSS region transcription start site region 82089
Tssr82090 8 84203668 to 84203671 3 - TSS region transcription start site region 82090
Tssr82091 8 84204109 to 84204128 19 - TSS region transcription start site region 82091
Tssr78376 8 84204288 to 84204304 16 + TSS region transcription start site region 78376
Tssr78377 8 84205229 to 84205235 6 + TSS region transcription start site region 78377
Mir23a 8 84208518 to 84208592 74 + miRNA gene microRNA 23a
Mirc11 8 84208518 to 84208921 403 complex/cluster/region microRNA cluster 11, including Mir23a through Mir24-2
Mir27a 8 84208672 to 84208758 86 + miRNA gene microRNA 27a
Mir24-2 8 84208815 to 84208921 106 + miRNA gene microRNA 24-2
Mir3074-2 8 84208825 to 84208907 82 - miRNA gene microRNA 3074-2
Tssr78378 8 84208893 to 84208902 9 + TSS region transcription start site region 78378
Gm26532 8 84208920 to 84209609 689 + lincRNA gene predicted gene, 26532
Cpgi20685 8 84210016 to 84210610 594 CpG island CpG island 20685
Zswim4 8 84210942 to 84237042 26100 - protein coding gene zinc finger SWIM-type containing 4
nmf242 8 84220392 to 92685497 8465105 heritable phenotypic marker neuroscience mutagenesis facility, 242
D8Mit264 8 84220392 to 84220514 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 264
Tssr82092 8 84223445 to 84223462 17 - TSS region transcription start site region 82092
Gm32760 8 84235112 to 84238340 3228 + lncRNA gene predicted gene, 32760
Cpgi20686 8 84236470 to 84237596 1126 CpG island CpG island 20686
Tssr2625 8 84237008 to 84237014 6 - TSS region transcription start site region 2625
Tssr82093 8 84237046 to 84237061 15 - TSS region transcription start site region 82093
Tssr78379 8 84237312 to 84237331 19 + TSS region transcription start site region 78379
D8Ertd738e 8 84246238 to 84249719 3481 - protein coding gene DNA segment, Chr 8, ERATO Doi 738, expressed
Cpgi20687 8 84249242 to 84249886 644 CpG island CpG island 20687
Tssr82094 8 84249630 to 84249641 11 - TSS region transcription start site region 82094
Tssr82095 8 84249666 to 84249681 15 - TSS region transcription start site region 82095
Tssr82096 8 84249701 to 84249733 32 - TSS region transcription start site region 82096
Mri1 8 84250576 to 84257324 6748 - protein coding gene methylthioribose-1-phosphate isomerase 1
Cpgi20688 8 84256530 to 84257640 1110 CpG island CpG island 20688
Tssr82097 8 84257262 to 84257301 39 - TSS region transcription start site region 82097
Tssr82098 8 84257311 to 84257325 14 - TSS region transcription start site region 82098
Ccdc130 8 84257795 to 84270380 12585 - protein coding gene coiled-coil domain containing 130
Cpgi20689 8 84270065 to 84270671 606 CpG island CpG island 20689
Tssr82099 8 84270358 to 84270405 47 - TSS region transcription start site region 82099
Gm18677 8 84280876 to 84281604 728 - pseudogene predicted gene, 18677
Gm45608 8 84302963 to 84303733 770 - pseudogene predicted gene 45608
Cpgi20690 8 84338520 to 84338972 452 CpG island CpG island 20690
Tssr78380 8 84338594 to 84338608 14 + TSS region transcription start site region 78380
Tssr78381 8 84338614 to 84338634 20 + TSS region transcription start site region 78381
Tssr78382 8 84338638 to 84338658 20 + TSS region transcription start site region 78382
Tssr78383 8 84338675 to 84338681 6 + TSS region transcription start site region 78383
Tssr78384 8 84338811 to 84338828 17 + TSS region transcription start site region 78384
Tssr78385 8 84356740 to 84356754 14 + TSS region transcription start site region 78385
Tssr78386 8 84356775 to 84356787 12 + TSS region transcription start site region 78386
Gm23626 8 84380449 to 84380581 132 - snoRNA gene predicted gene, 23626
Cacna1a 8 84388440 to 84640246 251806 + protein coding gene calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
D8Mit78 8 84410244 to 84410387 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 78
Cpgi20691 8 84414103 to 84416408 2305 CpG island CpG island 20691
Tssr78387 8 84414263 to 84414274 11 + TSS region transcription start site region 78387
Tssr78388 8 84414323 to 84414334 11 + TSS region transcription start site region 78388
Tssr78389 8 84414383 to 84414475 92 + TSS region transcription start site region 78389
Tssr78390 8 84414655 to 84414671 16 + TSS region transcription start site region 78390
Tssr78391 8 84414685 to 84414725 40 + TSS region transcription start site region 78391
Tssr78392 8 84414740 to 84414751 11 + TSS region transcription start site region 78392