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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83817302-84177315

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D8Mit236 8 83827192 to 83827309 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 236
Cpgi20659 8 83862465 to 83862618 153 CpG island CpG island 20659
Cpgi20660 8 83874746 to 83876669 1923 CpG island CpG island 20660
Gm26721 8 83887079 to 83899501 12422 - lincRNA gene predicted gene, 26721
Gm5355 8 83891772 to 83892305 533 + pseudogene predicted gene 5355
Cpgi20661 8 83896997 to 83897483 486 CpG island CpG island 20661
Cpgi20662 8 83899385 to 83901771 2386 CpG island CpG island 20662
Tssr78300 8 83899958 to 83899969 11 + TSS region transcription start site region 78300
Tssr78301 8 83900088 to 83900093 5 + TSS region transcription start site region 78301
Tssr78302 8 83900096 to 83900110 14 + TSS region transcription start site region 78302
Adgrl1 8 83900105 to 83941954 41849 + protein coding gene adhesion G protein-coupled receptor L1
Tssr78303 8 83900114 to 83900165 51 + TSS region transcription start site region 78303
Tssr78304 8 83900447 to 83900488 41 + TSS region transcription start site region 78304
Tssr78305 8 83900592 to 83900617 25 + TSS region transcription start site region 78305
Tssr78306 8 83900620 to 83900645 25 + TSS region transcription start site region 78306
Tssr78307 8 83900706 to 83900717 11 + TSS region transcription start site region 78307
Tssr2622 8 83918903 to 83918912 9 + TSS region transcription start site region 2622
Gm44450 8 83929443 to 83929556 113 - miRNA gene predicted gene, 44450
Gm44330 8 83929688 to 83929830 142 - miRNA gene predicted gene, 44330
Tssr78308 8 83929914 to 83929934 20 + TSS region transcription start site region 78308
Gm10644 8 83935137 to 83955428 20291 - protein coding gene predicted gene 10644
D8Mit238 8 83935296 to 83935400 104 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 238
Tssr78309 8 83941572 to 83941595 23 + TSS region transcription start site region 78309
Cpgi20663 8 83954854 to 83956269 1415 CpG island CpG island 20663
Tssr78310 8 83955657 to 83955664 7 + TSS region transcription start site region 78310
Tssr78311 8 83955667 to 83955676 9 + TSS region transcription start site region 78311
Tssr78312 8 83955677 to 83955688 11 + TSS region transcription start site region 78312
Asf1b 8 83955694 to 83970195 14501 + protein coding gene anti-silencing function 1B histone chaperone
Tssr78313 8 83955703 to 83955721 18 + TSS region transcription start site region 78313
Cpgi20664 8 83972090 to 83973901 1811 CpG island CpG island 20664
Tssr78314 8 83972951 to 83973028 77 + TSS region transcription start site region 78314
Prkaca 8 83972993 to 83996443 23450 + protein coding gene protein kinase, cAMP dependent, catalytic, alpha
Tssr78315 8 83973048 to 83973059 11 + TSS region transcription start site region 78315
Tssr78316 8 83976863 to 83976864 1 + TSS region transcription start site region 78316
Tssr78317 8 83976866 to 83976878 12 + TSS region transcription start site region 78317
Tssr78318 8 83976879 to 83976899 20 + TSS region transcription start site region 78318
Tssr78319 8 83977045 to 83977061 16 + TSS region transcription start site region 78319
Tssr78320 8 83978424 to 83978461 37 + TSS region transcription start site region 78320
Tssr78321 8 83980512 to 83980552 40 + TSS region transcription start site region 78321
Tssr78322 8 83982795 to 83982803 8 + TSS region transcription start site region 78322
Tssr78323 8 83989465 to 83989479 14 + TSS region transcription start site region 78323
Tssr78324 8 83989530 to 83989549 19 + TSS region transcription start site region 78324
Tssr78325 8 83989554 to 83989575 21 + TSS region transcription start site region 78325
Tssr78326 8 83995413 to 83995430 17 + TSS region transcription start site region 78326
Tssr78327 8 83995473 to 83995480 7 + TSS region transcription start site region 78327
Tssr78328 8 83995726 to 83995744 18 + TSS region transcription start site region 78328
Tssr78329 8 83995877 to 83995891 14 + TSS region transcription start site region 78329
Tssr78330 8 83996340 to 83996371 31 + TSS region transcription start site region 78330
Cpgi20665 8 83996471 to 83999207 2736 CpG island CpG island 20665
Tssr82055 8 83996863 to 83996891 28 - TSS region transcription start site region 82055
Tssr78331 8 83997107 to 83997123 16 + TSS region transcription start site region 78331
Tssr78332 8 83997208 to 83997216 8 + TSS region transcription start site region 78332
Tssr78333 8 83997252 to 83997265 13 + TSS region transcription start site region 78333
Tssr78334 8 83997302 to 83997315 13 + TSS region transcription start site region 78334
Tssr78335 8 83997316 to 83997369 53 + TSS region transcription start site region 78335
Tssr78336 8 83997370 to 83997381 11 + TSS region transcription start site region 78336
Tssr78337 8 83997515 to 83997516 1 + TSS region transcription start site region 78337
Tssr78338 8 83997613 to 83997654 41 + TSS region transcription start site region 78338
Samd1 8 83997672 to 84000386 2714 + protein coding gene sterile alpha motif domain containing 1
Cpgi20666 8 84001230 to 84001897 667 CpG island CpG island 20666
Tssr78339 8 84001434 to 84001441 7 + TSS region transcription start site region 78339
Tssr78340 8 84001455 to 84001468 13 + TSS region transcription start site region 78340
Tssr78341 8 84001495 to 84001500 5 + TSS region transcription start site region 78341
1700067K01Rik 8 84001502 to 84004770 3268 + protein coding gene RIKEN cDNA 1700067K01 gene
Tssr78342 8 84003106 to 84003118 12 + TSS region transcription start site region 78342
Cpgi20667 8 84004491 to 84004979 488 CpG island CpG island 20667
Mir8111 8 84005628 to 84005764 136 + miRNA gene microRNA 8111
2210011C24Rik 8 84010228 to 84011720 1492 - protein coding gene RIKEN cDNA 2210011C24 gene
Cpgi20668 8 84010702 to 84013085 2383 CpG island CpG island 20668
Tssr82056 8 84011476 to 84011486 10 - TSS region transcription start site region 82056
Mir1199 8 84011515 to 84011633 118 - miRNA gene microRNA 1199
Tssr82057 8 84012123 to 84012169 46 - TSS region transcription start site region 82057
Cpgi20669 8 84021162 to 84021393 231 CpG island CpG island 20669
Tssr78343 8 84021362 to 84021374 12 + TSS region transcription start site region 78343
Tssr78344 8 84021444 to 84021475 31 + TSS region transcription start site region 78344
Palm3 8 84021471 to 84030295 8824 + protein coding gene paralemmin 3
Tssr82058 8 84023249 to 84023295 46 - TSS region transcription start site region 82058
Cpgi20670 8 84025851 to 84026684 833 CpG island CpG island 20670
Tssr78345 8 84026059 to 84026086 27 + TSS region transcription start site region 78345
Tssr78346 8 84026149 to 84026169 20 + TSS region transcription start site region 78346
Il27ra 8 84030294 to 84042589 12295 - protein coding gene interleukin 27 receptor, alpha
Tssr82059 8 84034421 to 84034424 3 - TSS region transcription start site region 82059
Cpgi20671 8 84042172 to 84042694 522 CpG island CpG island 20671
Tssr82060 8 84042540 to 84042599 59 - TSS region transcription start site region 82060
Rln3 8 84043067 to 84044979 1912 - protein coding gene relaxin 3
Cpgi20672 8 84044748 to 84045039 291 CpG island CpG island 20672
Tssr82061 8 84044982 to 84044995 13 - TSS region transcription start site region 82061
Gm10643 8 84063561 to 84065137 1576 - protein coding gene predicted gene 10643
C330011M18Rik 8 84065236 to 84067287 2051 - antisense lncRNA gene RIKEN cDNA C330011M18 gene
Cpgi20673 8 84066087 to 84067591 1504 CpG island CpG island 20673
Tssr78347 8 84066384 to 84066398 14 + TSS region transcription start site region 78347
Tssr78348 8 84066419 to 84066431 12 + TSS region transcription start site region 78348
Tssr82062 8 84066432 to 84066450 18 - TSS region transcription start site region 82062
Tssr78349 8 84066824 to 84066882 58 + TSS region transcription start site region 78349
Rfx1 8 84066834 to 84096992 30158 + protein coding gene regulatory factor X, 1 (influences HLA class II expression)
Tssr78350 8 84066902 to 84066919 17 + TSS region transcription start site region 78350
Tssr82063 8 84067283 to 84067288 5 - TSS region transcription start site region 82063
Tssr78351 8 84073858 to 84073874 16 + TSS region transcription start site region 78351
Tssr78352 8 84073876 to 84073899 23 + TSS region transcription start site region 78352
Tssr78353 8 84073900 to 84073919 19 + TSS region transcription start site region 78353
Tssr78354 8 84073939 to 84073946 7 + TSS region transcription start site region 78354
Tssr78355 8 84084074 to 84084093 19 + TSS region transcription start site region 78355
Tssr78356 8 84084094 to 84084106 12 + TSS region transcription start site region 78356
Cpgi20674 8 84084551 to 84084974 423 CpG island CpG island 20674
Mir709 8 84086099 to 84086186 87 + miRNA gene microRNA 709
Dcaf15 8 84097072 to 84104768 7696 - protein coding gene DDB1 and CUL4 associated factor 15
Gm39210 8 84099436 to 84100525 1089 + lncRNA gene predicted gene, 39210
Cpgi20675 8 84104122 to 84105231 1109 CpG island CpG island 20675
Tssr82064 8 84104744 to 84104759 15 - TSS region transcription start site region 82064
Tssr82065 8 84104778 to 84104793 15 - TSS region transcription start site region 82065
Tssr82066 8 84105006 to 84105017 11 - TSS region transcription start site region 82066
Tssr78357 8 84125892 to 84125932 40 + TSS region transcription start site region 78357
Tssr78358 8 84125980 to 84125999 19 + TSS region transcription start site region 78358
Podnl1 8 84125989 to 84132527 6538 + protein coding gene podocan-like 1
Tssr78359 8 84126024 to 84126045 21 + TSS region transcription start site region 78359
Tssr78360 8 84127102 to 84127113 11 + TSS region transcription start site region 78360
Tssr78361 8 84127125 to 84127139 14 + TSS region transcription start site region 78361
Tssr78362 8 84127514 to 84127525 11 + TSS region transcription start site region 78362
Tssr78363 8 84127538 to 84127558 20 + TSS region transcription start site region 78363
Tssr78364 8 84127795 to 84127806 11 + TSS region transcription start site region 78364
Tssr78365 8 84128579 to 84128597 18 + TSS region transcription start site region 78365
Tssr78366 8 84130253 to 84130262 9 + TSS region transcription start site region 78366
Cpgi20676 8 84130630 to 84131255 625 CpG island CpG island 20676
Cc2d1a 8 84132828 to 84147931 15103 - protein coding gene coiled-coil and C2 domain containing 1A
Tssr82067 8 84134058 to 84134098 40 - TSS region transcription start site region 82067
Cpgi20677 8 84147482 to 84148418 936 CpG island CpG island 20677
Tssr82068 8 84147767 to 84147786 19 - TSS region transcription start site region 82068
Tssr82069 8 84147858 to 84147942 84 - TSS region transcription start site region 82069
4930432K21Rik 8 84148025 to 84172590 24565 + protein coding gene RIKEN cDNA 4930432K21 gene
Tssr78367 8 84148074 to 84148086 12 + TSS region transcription start site region 78367
Tssr78368 8 84148304 to 84148321 17 + TSS region transcription start site region 78368
Gm25110 8 84156757 to 84156877 120 + miRNA gene predicted gene, 25110
Nanos3 8 84173730 to 84176945 3215 - protein coding gene nanos C2HC-type zinc finger 3