Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83672192-83982309

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkn1 8 83666536 to 83699179 32643 - protein coding gene protein kinase N1
Ptger1 8 83666678 to 83672753 6075 + protein coding gene prostaglandin E receptor 1 (subtype EP1)
Tssr82044 8 83683352 to 83683362 10 - TSS region transcription start site region 82044
Tssr82045 8 83690107 to 83690112 5 - TSS region transcription start site region 82045
Tssr78282 8 83691040 to 83691087 47 + TSS region transcription start site region 78282
Tssr82046 8 83694004 to 83694044 40 - TSS region transcription start site region 82046
Cpgi20652 8 83697846 to 83698063 217 CpG island CpG island 20652
Cpgi20653 8 83698226 to 83699503 1277 CpG island CpG island 20653
Tssr82047 8 83699095 to 83699206 111 - TSS region transcription start site region 82047
Tssr78283 8 83702094 to 83702104 10 + TSS region transcription start site region 78283
Cpgi20654 8 83714910 to 83715948 1038 CpG island CpG island 20654
Ddx39 8 83715177 to 83723351 8174 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Tssr78284 8 83715191 to 83715204 13 + TSS region transcription start site region 78284
Tssr78285 8 83715227 to 83715238 11 + TSS region transcription start site region 78285
Tssr78286 8 83715239 to 83715288 49 + TSS region transcription start site region 78286
Tssr78287 8 83715305 to 83715312 7 + TSS region transcription start site region 78287
Tssr78288 8 83715504 to 83715524 20 + TSS region transcription start site region 78288
Adgre5 8 83723251 to 83741311 18060 - protein coding gene adhesion G protein-coupled receptor E5
Mir1668 8 83723878 to 83723984 106 - miRNA gene microRNA 1668
Tssr82048 8 83733496 to 83733500 4 - TSS region transcription start site region 82048
Tssr78289 8 83738404 to 83738421 17 + TSS region transcription start site region 78289
Tssr78290 8 83738437 to 83738449 12 + TSS region transcription start site region 78290
Tssr82049 8 83740061 to 83740070 9 - TSS region transcription start site region 82049
Tssr2618 8 83740106 to 83740113 7 - TSS region transcription start site region 2618
Tssr82050 8 83740146 to 83740158 12 - TSS region transcription start site region 82050
Tssr78291 8 83740337 to 83740356 19 + TSS region transcription start site region 78291
Tssr78292 8 83740363 to 83740378 15 + TSS region transcription start site region 78292
Tssr2619 8 83740390 to 83740401 11 + TSS region transcription start site region 2619
Tssr82051 8 83740427 to 83740432 5 - TSS region transcription start site region 82051
Tssr78293 8 83740481 to 83740519 38 + TSS region transcription start site region 78293
Tssr78294 8 83740564 to 83740574 10 + TSS region transcription start site region 78294
Tssr78295 8 83740615 to 83740620 5 + TSS region transcription start site region 78295
Tssr78296 8 83740635 to 83740639 4 + TSS region transcription start site region 78296
Cpgi20655 8 83740878 to 83741690 812 CpG island CpG island 20655
Tssr82052 8 83741173 to 83741190 17 - TSS region transcription start site region 82052
Tssr2620 8 83741276 to 83741297 21 + TSS region transcription start site region 2620
Gm46046 8 83741283 to 83745645 4362 + lncRNA gene predicted gene, 46046
Tssr78297 8 83741388 to 83741434 46 + TSS region transcription start site region 78297
Tssr2621 8 83742555 to 83742565 10 + TSS region transcription start site region 2621
Cpgi20656 8 83747676 to 83748099 423 CpG island CpG island 20656
Tssr82053 8 83748175 to 83748180 5 - TSS region transcription start site region 82053
Tssr82054 8 83748739 to 83748750 11 - TSS region transcription start site region 82054
Tssr78298 8 83748928 to 83748953 25 + TSS region transcription start site region 78298
Tssr78299 8 83748996 to 83749005 9 + TSS region transcription start site region 78299
Gm45778 8 83749504 to 83749656 152 + pseudogene predicted gene 45778
Gm22024 8 83752918 to 83753204 286 + unclassified non-coding RNA gene predicted gene, 22024
Gm42030 8 83762019 to 83762941 922 - lncRNA gene predicted gene, 42030
Cpgi20657 8 83772607 to 83773098 491 CpG island CpG island 20657
Cpgi20658 8 83783195 to 83783549 354 CpG island CpG island 20658
D8Mit236 8 83827192 to 83827309 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 236
Cpgi20659 8 83862465 to 83862618 153 CpG island CpG island 20659
Cpgi20660 8 83874746 to 83876669 1923 CpG island CpG island 20660
Gm26721 8 83887079 to 83899501 12422 - lincRNA gene predicted gene, 26721
Gm5355 8 83891772 to 83892305 533 + pseudogene predicted gene 5355
Cpgi20661 8 83896997 to 83897483 486 CpG island CpG island 20661
Cpgi20662 8 83899385 to 83901771 2386 CpG island CpG island 20662
Tssr78300 8 83899958 to 83899969 11 + TSS region transcription start site region 78300
Tssr78301 8 83900088 to 83900093 5 + TSS region transcription start site region 78301
Tssr78302 8 83900096 to 83900110 14 + TSS region transcription start site region 78302
Adgrl1 8 83900105 to 83941954 41849 + protein coding gene adhesion G protein-coupled receptor L1
Tssr78303 8 83900114 to 83900165 51 + TSS region transcription start site region 78303
Tssr78304 8 83900447 to 83900488 41 + TSS region transcription start site region 78304
Tssr78305 8 83900592 to 83900617 25 + TSS region transcription start site region 78305
Tssr78306 8 83900620 to 83900645 25 + TSS region transcription start site region 78306
Tssr78307 8 83900706 to 83900717 11 + TSS region transcription start site region 78307
Tssr2622 8 83918903 to 83918912 9 + TSS region transcription start site region 2622
Gm44450 8 83929443 to 83929556 113 - miRNA gene predicted gene, 44450
Gm44330 8 83929688 to 83929830 142 - miRNA gene predicted gene, 44330
Tssr78308 8 83929914 to 83929934 20 + TSS region transcription start site region 78308
Gm10644 8 83935137 to 83955428 20291 - protein coding gene predicted gene 10644
D8Mit238 8 83935296 to 83935400 104 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 238
Tssr78309 8 83941572 to 83941595 23 + TSS region transcription start site region 78309
Cpgi20663 8 83954854 to 83956269 1415 CpG island CpG island 20663
Tssr78310 8 83955657 to 83955664 7 + TSS region transcription start site region 78310
Tssr78311 8 83955667 to 83955676 9 + TSS region transcription start site region 78311
Tssr78312 8 83955677 to 83955688 11 + TSS region transcription start site region 78312
Asf1b 8 83955694 to 83970195 14501 + protein coding gene anti-silencing function 1B histone chaperone
Tssr78313 8 83955703 to 83955721 18 + TSS region transcription start site region 78313
Cpgi20664 8 83972090 to 83973901 1811 CpG island CpG island 20664
Tssr78314 8 83972951 to 83973028 77 + TSS region transcription start site region 78314
Prkaca 8 83972993 to 83996443 23450 + protein coding gene protein kinase, cAMP dependent, catalytic, alpha
Tssr78315 8 83973048 to 83973059 11 + TSS region transcription start site region 78315
Tssr78316 8 83976863 to 83976864 1 + TSS region transcription start site region 78316
Tssr78317 8 83976866 to 83976878 12 + TSS region transcription start site region 78317
Tssr78318 8 83976879 to 83976899 20 + TSS region transcription start site region 78318
Tssr78319 8 83977045 to 83977061 16 + TSS region transcription start site region 78319
Tssr78320 8 83978424 to 83978461 37 + TSS region transcription start site region 78320
Tssr78321 8 83980512 to 83980552 40 + TSS region transcription start site region 78321