Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83604504-83894656

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42029 8 83599835 to 83608094 8259 - lncRNA gene predicted gene, 42029
Cpgi20647 8 83607785 to 83609041 1256 CpG island CpG island 20647
Tssr82043 8 83607919 to 83607981 62 - TSS region transcription start site region 82043
Tssr78269 8 83608176 to 83608198 22 + TSS region transcription start site region 78269
Dnajb1 8 83608193 to 83612653 4460 + protein coding gene DnaJ heat shock protein family (Hsp40) member B1
Tssr2617 8 83608214 to 83608225 11 + TSS region transcription start site region 2617
Tssr78270 8 83608226 to 83608280 54 + TSS region transcription start site region 78270
Tssr78271 8 83608289 to 83608308 19 + TSS region transcription start site region 78271
Tssr78272 8 83608509 to 83608520 11 + TSS region transcription start site region 78272
Tssr78273 8 83608536 to 83608544 8 + TSS region transcription start site region 78273
Tssr78274 8 83608548 to 83608575 27 + TSS region transcription start site region 78274
Cpgi20648 8 83622249 to 83622589 340 CpG island CpG island 20648
Cpgi20649 8 83652268 to 83653293 1025 CpG island CpG island 20649
Tssr78275 8 83652632 to 83652633 1 + TSS region transcription start site region 78275
Tssr78276 8 83652651 to 83652667 16 + TSS region transcription start site region 78276
Tssr78277 8 83652670 to 83652711 41 + TSS region transcription start site region 78277
Gipc1 8 83652677 to 83664694 12017 + protein coding gene GIPC PDZ domain containing family, member 1
Tssr78278 8 83657556 to 83657564 8 + TSS region transcription start site region 78278
Cpgi20650 8 83661161 to 83661395 234 CpG island CpG island 20650
Pkn1 8 83666536 to 83699179 32643 - protein coding gene protein kinase N1
Tssr78279 8 83666634 to 83666659 25 + TSS region transcription start site region 78279
Ptger1 8 83666678 to 83672753 6075 + protein coding gene prostaglandin E receptor 1 (subtype EP1)
Tssr78280 8 83666707 to 83666717 10 + TSS region transcription start site region 78280
Tssr78281 8 83666827 to 83666882 55 + TSS region transcription start site region 78281
Cpgi20651 8 83667699 to 83669480 1781 CpG island CpG island 20651
Tssr82044 8 83683352 to 83683362 10 - TSS region transcription start site region 82044
Tssr82045 8 83690107 to 83690112 5 - TSS region transcription start site region 82045
Tssr78282 8 83691040 to 83691087 47 + TSS region transcription start site region 78282
Tssr82046 8 83694004 to 83694044 40 - TSS region transcription start site region 82046
Cpgi20652 8 83697846 to 83698063 217 CpG island CpG island 20652
Cpgi20653 8 83698226 to 83699503 1277 CpG island CpG island 20653
Tssr82047 8 83699095 to 83699206 111 - TSS region transcription start site region 82047
Tssr78283 8 83702094 to 83702104 10 + TSS region transcription start site region 78283
Cpgi20654 8 83714910 to 83715948 1038 CpG island CpG island 20654
Ddx39 8 83715177 to 83723351 8174 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Tssr78284 8 83715191 to 83715204 13 + TSS region transcription start site region 78284
Tssr78285 8 83715227 to 83715238 11 + TSS region transcription start site region 78285
Tssr78286 8 83715239 to 83715288 49 + TSS region transcription start site region 78286
Tssr78287 8 83715305 to 83715312 7 + TSS region transcription start site region 78287
Tssr78288 8 83715504 to 83715524 20 + TSS region transcription start site region 78288
Adgre5 8 83723251 to 83741311 18060 - protein coding gene adhesion G protein-coupled receptor E5
Mir1668 8 83723878 to 83723984 106 - miRNA gene microRNA 1668
Tssr82048 8 83733496 to 83733500 4 - TSS region transcription start site region 82048
Tssr78289 8 83738404 to 83738421 17 + TSS region transcription start site region 78289
Tssr78290 8 83738437 to 83738449 12 + TSS region transcription start site region 78290
Tssr82049 8 83740061 to 83740070 9 - TSS region transcription start site region 82049
Tssr2618 8 83740106 to 83740113 7 - TSS region transcription start site region 2618
Tssr82050 8 83740146 to 83740158 12 - TSS region transcription start site region 82050
Tssr78291 8 83740337 to 83740356 19 + TSS region transcription start site region 78291
Tssr78292 8 83740363 to 83740378 15 + TSS region transcription start site region 78292
Tssr2619 8 83740390 to 83740401 11 + TSS region transcription start site region 2619
Tssr82051 8 83740427 to 83740432 5 - TSS region transcription start site region 82051
Tssr78293 8 83740481 to 83740519 38 + TSS region transcription start site region 78293
Tssr78294 8 83740564 to 83740574 10 + TSS region transcription start site region 78294
Tssr78295 8 83740615 to 83740620 5 + TSS region transcription start site region 78295
Tssr78296 8 83740635 to 83740639 4 + TSS region transcription start site region 78296
Cpgi20655 8 83740878 to 83741690 812 CpG island CpG island 20655
Tssr82052 8 83741173 to 83741190 17 - TSS region transcription start site region 82052
Tssr2620 8 83741276 to 83741297 21 + TSS region transcription start site region 2620
Gm46046 8 83741283 to 83745645 4362 + lncRNA gene predicted gene, 46046
Tssr78297 8 83741388 to 83741434 46 + TSS region transcription start site region 78297
Tssr2621 8 83742555 to 83742565 10 + TSS region transcription start site region 2621
Cpgi20656 8 83747676 to 83748099 423 CpG island CpG island 20656
Tssr82053 8 83748175 to 83748180 5 - TSS region transcription start site region 82053
Tssr82054 8 83748739 to 83748750 11 - TSS region transcription start site region 82054
Tssr78298 8 83748928 to 83748953 25 + TSS region transcription start site region 78298
Tssr78299 8 83748996 to 83749005 9 + TSS region transcription start site region 78299
Gm45778 8 83749504 to 83749656 152 + pseudogene predicted gene 45778
Gm22024 8 83752918 to 83753204 286 + unclassified non-coding RNA gene predicted gene, 22024
Gm42030 8 83762019 to 83762941 922 - lncRNA gene predicted gene, 42030
Cpgi20657 8 83772607 to 83773098 491 CpG island CpG island 20657
Cpgi20658 8 83783195 to 83783549 354 CpG island CpG island 20658
D8Mit236 8 83827192 to 83827309 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 236
Cpgi20659 8 83862465 to 83862618 153 CpG island CpG island 20659
Cpgi20660 8 83874746 to 83876669 1923 CpG island CpG island 20660
Gm26721 8 83887079 to 83899501 12422 - lincRNA gene predicted gene, 26721
Gm5355 8 83891772 to 83892305 533 + pseudogene predicted gene 5355