Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:83418189-83728216

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clgn 8 83389867 to 83428552 38685 + protein coding gene calmegin
Scoc 8 83434492 to 83458439 23947 - protein coding gene short coiled-coil protein
Cpgi20643 8 83441849 to 83442858 1009 CpG island CpG island 20643
Tssr82001 8 83442424 to 83442436 12 - TSS region transcription start site region 82001
Tssr82002 8 83442442 to 83442467 25 - TSS region transcription start site region 82002
Tssr82003 8 83442478 to 83442507 29 - TSS region transcription start site region 82003
Tssr82004 8 83442521 to 83442543 22 - TSS region transcription start site region 82004
Tssr82005 8 83442583 to 83442594 11 - TSS region transcription start site region 82005
Tssr82006 8 83442608 to 83442630 22 - TSS region transcription start site region 82006
Tssr82007 8 83442656 to 83442667 11 - TSS region transcription start site region 82007
Tssr82008 8 83458352 to 83458365 13 - TSS region transcription start site region 82008
Tssr82009 8 83458386 to 83458397 11 - TSS region transcription start site region 82009
Tssr82010 8 83458406 to 83458417 11 - TSS region transcription start site region 82010
Tssr82011 8 83458435 to 83458442 7 - TSS region transcription start site region 82011
Gm5910 8 83477572 to 83479116 1544 - pseudogene predicted gene 5910
Gm33242 8 83489916 to 83490829 913 - pseudogene predicted gene, 33242
Olfr370 8 83541093 to 83542188 1095 + protein coding gene olfactory receptor 370
Cpgi20644 8 83541505 to 83541661 156 CpG island CpG island 20644
Gm18000 8 83547557 to 83548264 707 + pseudogene predicted gene, 18000
Cpgi20645 8 83566455 to 83567269 814 CpG island CpG island 20645
Tssr78266 8 83566724 to 83566815 91 + TSS region transcription start site region 78266
Ndufb7 8 83566758 to 83571623 4865 + protein coding gene NADH:ubiquinone oxidoreductase subunit B7
Tecr 8 83571698 to 83594491 22793 - protein coding gene trans-2,3-enoyl-CoA reductase
Tssr82012 8 83571760 to 83571774 14 - TSS region transcription start site region 82012
Tssr82013 8 83571822 to 83571866 44 - TSS region transcription start site region 82013
Tssr82014 8 83572291 to 83572318 27 - TSS region transcription start site region 82014
Tssr82015 8 83572430 to 83572471 41 - TSS region transcription start site region 82015
Tssr82016 8 83572595 to 83572627 32 - TSS region transcription start site region 82016
Tssr82017 8 83572708 to 83572740 32 - TSS region transcription start site region 82017
Tssr82018 8 83572916 to 83572954 38 - TSS region transcription start site region 82018
Tssr82019 8 83573063 to 83573070 7 - TSS region transcription start site region 82019
Tssr82020 8 83573106 to 83573121 15 - TSS region transcription start site region 82020
Tssr82021 8 83573142 to 83573149 7 - TSS region transcription start site region 82021
Tssr82022 8 83573189 to 83573216 27 - TSS region transcription start site region 82022
Tssr82023 8 83573222 to 83573271 49 - TSS region transcription start site region 82023
Tssr82024 8 83573451 to 83573465 14 - TSS region transcription start site region 82024
Tssr82025 8 83573501 to 83573512 11 - TSS region transcription start site region 82025
Tssr82026 8 83574665 to 83574676 11 - TSS region transcription start site region 82026
Tssr82027 8 83574677 to 83574707 30 - TSS region transcription start site region 82027
Tssr82028 8 83574731 to 83574747 16 - TSS region transcription start site region 82028
Tssr82029 8 83574758 to 83574778 20 - TSS region transcription start site region 82029
Tssr82030 8 83574780 to 83574785 5 - TSS region transcription start site region 82030
Tssr82031 8 83574794 to 83574809 15 - TSS region transcription start site region 82031
Tssr82032 8 83574829 to 83574850 21 - TSS region transcription start site region 82032
Tssr78267 8 83576039 to 83576050 11 + TSS region transcription start site region 78267
D830024N08Rik 8 83576044 to 83585919 9875 + antisense lncRNA gene RIKEN cDNA D830024N08 gene
Tssr78268 8 83576188 to 83576251 63 + TSS region transcription start site region 78268
Tssr82033 8 83577961 to 83577967 6 - TSS region transcription start site region 82033
Tssr82034 8 83578042 to 83578046 4 - TSS region transcription start site region 82034
Tssr82035 8 83583369 to 83583391 22 - TSS region transcription start site region 82035
Tssr82036 8 83583413 to 83583420 7 - TSS region transcription start site region 82036
Gm45823 8 83584087 to 83585525 1438 - sense intronic lncRNA gene predicted gene 45823
Tssr82037 8 83588503 to 83588527 24 - TSS region transcription start site region 82037
Tssr82038 8 83588545 to 83588550 5 - TSS region transcription start site region 82038
Tssr82039 8 83591788 to 83591796 8 - TSS region transcription start site region 82039
Tssr82040 8 83593359 to 83593363 4 - TSS region transcription start site region 82040
Cpgi20646 8 83593824 to 83594781 957 CpG island CpG island 20646
Tssr82041 8 83594405 to 83594432 27 - TSS region transcription start site region 82041
Tssr82042 8 83594440 to 83594481 41 - TSS region transcription start site region 82042
Gm42029 8 83599835 to 83608094 8259 - lncRNA gene predicted gene, 42029
Gm18001 8 83600013 to 83600700 687 + pseudogene predicted gene, 18001
Cpgi20647 8 83607785 to 83609041 1256 CpG island CpG island 20647
Tssr82043 8 83607919 to 83607981 62 - TSS region transcription start site region 82043
Tssr78269 8 83608176 to 83608198 22 + TSS region transcription start site region 78269
Dnajb1 8 83608193 to 83612653 4460 + protein coding gene DnaJ heat shock protein family (Hsp40) member B1
Tssr2617 8 83608214 to 83608225 11 + TSS region transcription start site region 2617
Tssr78270 8 83608226 to 83608280 54 + TSS region transcription start site region 78270
Tssr78271 8 83608289 to 83608308 19 + TSS region transcription start site region 78271
Tssr78272 8 83608509 to 83608520 11 + TSS region transcription start site region 78272
Tssr78273 8 83608536 to 83608544 8 + TSS region transcription start site region 78273
Tssr78274 8 83608548 to 83608575 27 + TSS region transcription start site region 78274
Cpgi20648 8 83622249 to 83622589 340 CpG island CpG island 20648
Cpgi20649 8 83652268 to 83653293 1025 CpG island CpG island 20649
Tssr78275 8 83652632 to 83652633 1 + TSS region transcription start site region 78275
Tssr78276 8 83652651 to 83652667 16 + TSS region transcription start site region 78276
Tssr78277 8 83652670 to 83652711 41 + TSS region transcription start site region 78277
Gipc1 8 83652677 to 83664694 12017 + protein coding gene GIPC PDZ domain containing family, member 1
Tssr78278 8 83657556 to 83657564 8 + TSS region transcription start site region 78278
Cpgi20650 8 83661161 to 83661395 234 CpG island CpG island 20650
Pkn1 8 83666536 to 83699179 32643 - protein coding gene protein kinase N1
Tssr78279 8 83666634 to 83666659 25 + TSS region transcription start site region 78279
Ptger1 8 83666678 to 83672753 6075 + protein coding gene prostaglandin E receptor 1 (subtype EP1)
Tssr78280 8 83666707 to 83666717 10 + TSS region transcription start site region 78280
Tssr78281 8 83666827 to 83666882 55 + TSS region transcription start site region 78281
Cpgi20651 8 83667699 to 83669480 1781 CpG island CpG island 20651
Tssr82044 8 83683352 to 83683362 10 - TSS region transcription start site region 82044
Tssr82045 8 83690107 to 83690112 5 - TSS region transcription start site region 82045
Tssr78282 8 83691040 to 83691087 47 + TSS region transcription start site region 78282
Tssr82046 8 83694004 to 83694044 40 - TSS region transcription start site region 82046
Cpgi20652 8 83697846 to 83698063 217 CpG island CpG island 20652
Cpgi20653 8 83698226 to 83699503 1277 CpG island CpG island 20653
Tssr82047 8 83699095 to 83699206 111 - TSS region transcription start site region 82047
Tssr78283 8 83702094 to 83702104 10 + TSS region transcription start site region 78283
Cpgi20654 8 83714910 to 83715948 1038 CpG island CpG island 20654
Ddx39 8 83715177 to 83723351 8174 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Tssr78284 8 83715191 to 83715204 13 + TSS region transcription start site region 78284
Tssr78285 8 83715227 to 83715238 11 + TSS region transcription start site region 78285
Tssr78286 8 83715239 to 83715288 49 + TSS region transcription start site region 78286
Tssr78287 8 83715305 to 83715312 7 + TSS region transcription start site region 78287
Tssr78288 8 83715504 to 83715524 20 + TSS region transcription start site region 78288
Adgre5 8 83723251 to 83741311 18060 - protein coding gene adhesion G protein-coupled receptor E5
Mir1668 8 83723878 to 83723984 106 - miRNA gene microRNA 1668