Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:80888177-81729149

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20632 8 80915788 to 80916051 263 CpG island CpG island 20632
Gm27048 8 80933534 to 80938667 5133 - lincRNA gene predicted gene, 27048
Tssr78161 8 80933603 to 80933608 5 + TSS region transcription start site region 78161
Gm4891 8 80933677 to 80934588 911 + pseudogene predicted gene 4891
Skmw16 8 80939547 to 80939696 149 QTL skeletal muscle weight 16
D8Mit249 8 80939547 to 80939696 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 249
Tssr78162 8 80948948 to 80948966 18 + TSS region transcription start site region 78162
Gm31223 8 80948963 to 80984052 35089 + lncRNA gene predicted gene, 31223
Tssr78163 8 80948994 to 80949000 6 + TSS region transcription start site region 78163
Tssr78164 8 80950107 to 80950111 4 + TSS region transcription start site region 78164
D8Mit135 8 80963583 to 80963782 199 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 135
Cpgi20633 8 80971390 to 80971762 372 CpG island CpG island 20633
Usp38 8 80980733 to 81014928 34195 - protein coding gene ubiquitin specific peptidase 38
Tssr81928 8 81004701 to 81004704 3 - TSS region transcription start site region 81928
Cpgi20634 8 81013851 to 81015418 1567 CpG island CpG island 20634
Tssr81929 8 81014787 to 81014795 8 - TSS region transcription start site region 81929
Tssr81930 8 81014845 to 81014862 17 - TSS region transcription start site region 81930
Tssr81931 8 81014866 to 81014942 76 - TSS region transcription start site region 81931
Tssr78165 8 81015151 to 81015189 38 + TSS region transcription start site region 78165
Tssr78166 8 81015194 to 81015211 17 + TSS region transcription start site region 78166
Gm9725 8 81032374 to 81061276 28902 + antisense lncRNA gene predicted gene 9725
Tssr81932 8 81043408 to 81043423 15 - TSS region transcription start site region 81932
Gm45538 8 81061334 to 81069803 8469 + lincRNA gene predicted gene 45538
Gm4899 8 81197630 to 81198348 718 - pseudogene predicted gene 4899
Gm45539 8 81294636 to 81295063 427 - pseudogene predicted gene 45539
Gm5354 8 81308177 to 81309149 972 - pseudogene predicted gene 5354
D8Mit263 8 81310865 to 81310989 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 263
Cpgi20635 8 81342007 to 81343033 1026 CpG island CpG island 20635
Tssr78167 8 81342501 to 81342510 9 + TSS region transcription start site region 78167
Tssr78168 8 81342524 to 81342545 21 + TSS region transcription start site region 78168
Inpp4b 8 81342556 to 82127914 785358 + protein coding gene inositol polyphosphate-4-phosphatase, type II
Tssr78169 8 81342561 to 81342575 14 + TSS region transcription start site region 78169
Tssr78170 8 81342607 to 81342617 10 + TSS region transcription start site region 78170
Tssr78171 8 81342701 to 81342718 17 + TSS region transcription start site region 78171
Tssr78172 8 81353166 to 81353168 2 + TSS region transcription start site region 78172
Tssr78173 8 81364224 to 81364225 1 + TSS region transcription start site region 78173
D8Mit235 8 81408279 to 81408403 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 235
Tssr81933 8 81491881 to 81491886 5 - TSS region transcription start site region 81933
D8Mit102 8 81498125 to 81498272 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 102
Tssr78174 8 81498664 to 81498667 3 + TSS region transcription start site region 78174
5830456J23Rik 8 81517923 to 81519167 1244 unclassified gene RIKEN cDNA 5830456J23 gene
Tssr78175 8 81558885 to 81558896 11 + TSS region transcription start site region 78175
Tssr78176 8 81558968 to 81558972 4 + TSS region transcription start site region 78176
Tssr78177 8 81559002 to 81559011 9 + TSS region transcription start site region 78177
Tssr78178 8 81559033 to 81559050 17 + TSS region transcription start site region 78178
4930579O11Rik 8 81665876 to 81667118 1242 - unclassified gene RIKEN cDNA 4930579O11 gene
Tssr78179 8 81667186 to 81667193 7 + TSS region transcription start site region 78179