Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:79830214-80960228

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30494 8 79836777 to 79845820 9043 + lncRNA gene predicted gene, 30494
Gm45432 8 79863664 to 79864079 415 - pseudogene predicted gene 45432
Tssr81889 8 79864099 to 79864118 19 - TSS region transcription start site region 81889
n-TKctt20 8 79909278 to 79909350 72 + tRNA gene nuclear encoded tRNA lysine 20 (anticodon TTT)
Hhip 8 79965851 to 80058006 92155 - protein coding gene Hedgehog-interacting protein
Gm27820 8 79970390 to 79970564 174 + unclassified non-coding RNA gene predicted gene, 27820
Gm39206 8 80002398 to 80007412 5014 + lncRNA gene predicted gene, 39206
D8Mit134 8 80032536 to 80032655 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 134
Cpgi20627 8 80057223 to 80058559 1336 CpG island CpG island 20627
Tssr81890 8 80057506 to 80057564 58 - TSS region transcription start site region 81890
Tssr81891 8 80057989 to 80058017 28 - TSS region transcription start site region 81891
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Gm33096 8 80086205 to 80086697 492 - pseudogene predicted gene, 33096
Gm5909 8 80110806 to 80112086 1280 - pseudogene predicted gene 5909
Gm45431 8 80128194 to 80138667 10473 - lincRNA gene predicted gene 45431
D8Mit146 8 80146537 to 80146655 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 146
Gm30552 8 80168697 to 80177911 9214 + lncRNA gene predicted gene, 30552
Gm45430 8 80195199 to 80197656 2457 + lincRNA gene predicted gene 45430
Gm39208 8 80284843 to 80303069 18226 + lncRNA gene predicted gene, 39208
Tssr81892 8 80292277 to 80292279 2 - TSS region transcription start site region 81892
Gm30660 8 80312967 to 80326758 13791 - lncRNA gene predicted gene, 30660
Tssr81893 8 80325302 to 80325328 26 - TSS region transcription start site region 81893
Gm30605 8 80328624 to 80395214 66590 - lncRNA gene predicted gene, 30605
Tssr81894 8 80392302 to 80392306 4 - TSS region transcription start site region 81894
Tssr81895 8 80395057 to 80395062 5 - TSS region transcription start site region 81895
Tssr81896 8 80395102 to 80395109 7 - TSS region transcription start site region 81896
Tssr81897 8 80395114 to 80395119 5 - TSS region transcription start site region 81897
Tssr81898 8 80395129 to 80395134 5 - TSS region transcription start site region 81898
Tssr81899 8 80395152 to 80395165 13 - TSS region transcription start site region 81899
Tssr81900 8 80395177 to 80395192 15 - TSS region transcription start site region 81900
Tssr81901 8 80395200 to 80395205 5 - TSS region transcription start site region 81901
Tssr81902 8 80395214 to 80395228 14 - TSS region transcription start site region 81902
Tssr81903 8 80395237 to 80395240 3 - TSS region transcription start site region 81903
Tgq18 8 80460107 to 80460107 0 QTL triglyceride QTL 18
Tssr2614 8 80493970 to 80493979 9 + TSS region transcription start site region 2614
Tssr78154 8 80494032 to 80494065 33 + TSS region transcription start site region 78154
Gypa 8 80494045 to 80510785 16740 + protein coding gene glycophorin A
Tssr78155 8 80494251 to 80494255 4 + TSS region transcription start site region 78155
Tssr78156 8 80496294 to 80496311 17 + TSS region transcription start site region 78156
4930505O20Rik 8 80512489 to 80514490 2001 - antisense lncRNA gene RIKEN cDNA 4930505O20 gene
Gm39209 8 80512544 to 80526165 13621 + lncRNA gene predicted gene, 39209
Gm46044 8 80525705 to 80592537 66832 - lncRNA gene predicted gene, 46044
Frem3 8 80611080 to 80695356 84276 + protein coding gene Fras1 related extracellular matrix protein 3
Cpgi20628 8 80611186 to 80611821 635 CpG island CpG island 20628
D8Ertd572e 8 80646485 to 80646707 222 DNA segment DNA segment, Chr 8, ERATO Doi 572, expressed
Smarca5 8 80699943 to 80739459 39516 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Tssr81904 8 80700631 to 80700636 5 - TSS region transcription start site region 81904
Gm45872 8 80727554 to 80729137 1583 - unclassified gene predicted gene 45872
Cpgi20629 8 80738313 to 80739328 1015 CpG island CpG island 20629
Tssr81905 8 80739030 to 80739058 28 - TSS region transcription start site region 81905
Tssr81906 8 80739299 to 80739338 39 - TSS region transcription start site region 81906
Cpgi20630 8 80739627 to 80740197 570 CpG island CpG island 20630
D8Mit344 8 80743245 to 80743344 99 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 344
Gab1 8 80764438 to 80880519 116081 - protein coding gene growth factor receptor bound protein 2-associated protein 1
Tssr78157 8 80770592 to 80770597 5 + TSS region transcription start site region 78157
Gm7997 8 80770691 to 80771670 979 + pseudogene predicted gene 7997
Tssr81907 8 80788656 to 80788688 32 - TSS region transcription start site region 81907
Tssr81908 8 80788821 to 80788853 32 - TSS region transcription start site region 81908
Tssr81909 8 80788935 to 80788947 12 - TSS region transcription start site region 81909
Tssr81910 8 80800357 to 80800380 23 - TSS region transcription start site region 81910
Tssr78158 8 80811600 to 80811602 2 + TSS region transcription start site region 78158
Tssr81911 8 80835326 to 80835331 5 - TSS region transcription start site region 81911
Tssr81912 8 80859236 to 80859252 16 - TSS region transcription start site region 81912
Tssr81913 8 80859259 to 80859269 10 - TSS region transcription start site region 81913
Tssr78159 8 80859373 to 80859384 11 + TSS region transcription start site region 78159
Tssr78160 8 80859385 to 80859409 24 + TSS region transcription start site region 78160
1700019H22Rik 8 80859385 to 80860003 618 unclassified gene RIKEN cDNA 1700019H22 gene
Tssr81914 8 80859826 to 80859829 3 - TSS region transcription start site region 81914
Tssr81915 8 80861101 to 80861119 18 - TSS region transcription start site region 81915
Tssr81916 8 80869143 to 80869152 9 - TSS region transcription start site region 81916
Tssr81917 8 80869156 to 80869204 48 - TSS region transcription start site region 81917
Tssr81918 8 80869244 to 80869255 11 - TSS region transcription start site region 81918
Cpgi20631 8 80879105 to 80881002 1897 CpG island CpG island 20631
Tssr81919 8 80879780 to 80879801 21 - TSS region transcription start site region 81919
Tssr81920 8 80879890 to 80879926 36 - TSS region transcription start site region 81920
Tssr81921 8 80879929 to 80879946 17 - TSS region transcription start site region 81921
Gm31105 8 80879940 to 80881169 1229 + antisense lncRNA gene predicted gene, 31105
Tssr81922 8 80880161 to 80880249 88 - TSS region transcription start site region 81922
Tssr81923 8 80880274 to 80880306 32 - TSS region transcription start site region 81923
Tssr81924 8 80880309 to 80880327 18 - TSS region transcription start site region 81924
Tssr81925 8 80880463 to 80880471 8 - TSS region transcription start site region 81925
Tssr81926 8 80880480 to 80880499 19 - TSS region transcription start site region 81926
Tssr81927 8 80880507 to 80880534 27 - TSS region transcription start site region 81927
Cpgi20632 8 80915788 to 80916051 263 CpG island CpG island 20632
Gm27048 8 80933534 to 80938667 5133 - lincRNA gene predicted gene, 27048
Tssr78161 8 80933603 to 80933608 5 + TSS region transcription start site region 78161
Gm4891 8 80933677 to 80934588 911 + pseudogene predicted gene 4891
Skmw16 8 80939547 to 80939696 149 QTL skeletal muscle weight 16
D8Mit249 8 80939547 to 80939696 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 249
Tssr78162 8 80948948 to 80948966 18 + TSS region transcription start site region 78162
Gm31223 8 80948963 to 80984052 35089 + lncRNA gene predicted gene, 31223
Tssr78163 8 80948994 to 80949000 6 + TSS region transcription start site region 78163
Tssr78164 8 80950107 to 80950111 4 + TSS region transcription start site region 78164