Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:79770326-81900331

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174 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Anapc10 8 79711820 to 79779059 67239 + protein coding gene anaphase promoting complex subunit 10
Gm45434 8 79772878 to 79773170 292 - pseudogene predicted gene 45434
Gm45433 8 79803365 to 79803611 246 - pseudogene predicted gene 45433
Gm30494 8 79836777 to 79845820 9043 + lncRNA gene predicted gene, 30494
Gm45432 8 79863664 to 79864079 415 - pseudogene predicted gene 45432
Tssr81889 8 79864099 to 79864118 19 - TSS region transcription start site region 81889
n-TKctt20 8 79909278 to 79909350 72 + tRNA gene nuclear encoded tRNA lysine 20 (anticodon TTT)
Hhip 8 79965851 to 80058006 92155 - protein coding gene Hedgehog-interacting protein
Gm27820 8 79970390 to 79970564 174 + unclassified non-coding RNA gene predicted gene, 27820
Gm39206 8 80002398 to 80007412 5014 + lncRNA gene predicted gene, 39206
D8Mit134 8 80032536 to 80032655 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 134
Cpgi20627 8 80057223 to 80058559 1336 CpG island CpG island 20627
Tssr81890 8 80057506 to 80057564 58 - TSS region transcription start site region 81890
Tssr81891 8 80057989 to 80058017 28 - TSS region transcription start site region 81891
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Gm33096 8 80086205 to 80086697 492 - pseudogene predicted gene, 33096
Gm5909 8 80110806 to 80112086 1280 - pseudogene predicted gene 5909
Gm45431 8 80128194 to 80138667 10473 - lincRNA gene predicted gene 45431
D8Mit146 8 80146537 to 80146655 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 146
Gm30552 8 80168697 to 80177911 9214 + lncRNA gene predicted gene, 30552
Gm45430 8 80195199 to 80197656 2457 + lincRNA gene predicted gene 45430
Gm39208 8 80284843 to 80303069 18226 + lncRNA gene predicted gene, 39208
Tssr81892 8 80292277 to 80292279 2 - TSS region transcription start site region 81892
Gm30660 8 80312967 to 80326758 13791 - lncRNA gene predicted gene, 30660
Tssr81893 8 80325302 to 80325328 26 - TSS region transcription start site region 81893
Gm30605 8 80328624 to 80395214 66590 - lncRNA gene predicted gene, 30605
Tssr81894 8 80392302 to 80392306 4 - TSS region transcription start site region 81894
Tssr81895 8 80395057 to 80395062 5 - TSS region transcription start site region 81895
Tssr81896 8 80395102 to 80395109 7 - TSS region transcription start site region 81896
Tssr81897 8 80395114 to 80395119 5 - TSS region transcription start site region 81897
Tssr81898 8 80395129 to 80395134 5 - TSS region transcription start site region 81898
Tssr81899 8 80395152 to 80395165 13 - TSS region transcription start site region 81899
Tssr81900 8 80395177 to 80395192 15 - TSS region transcription start site region 81900
Tssr81901 8 80395200 to 80395205 5 - TSS region transcription start site region 81901
Tssr81902 8 80395214 to 80395228 14 - TSS region transcription start site region 81902
Tssr81903 8 80395237 to 80395240 3 - TSS region transcription start site region 81903
Tgq18 8 80460107 to 80460107 0 QTL triglyceride QTL 18
Tssr2614 8 80493970 to 80493979 9 + TSS region transcription start site region 2614
Tssr78154 8 80494032 to 80494065 33 + TSS region transcription start site region 78154
Gypa 8 80494045 to 80510785 16740 + protein coding gene glycophorin A
Tssr78155 8 80494251 to 80494255 4 + TSS region transcription start site region 78155
Tssr78156 8 80496294 to 80496311 17 + TSS region transcription start site region 78156
4930505O20Rik 8 80512489 to 80514490 2001 - antisense lncRNA gene RIKEN cDNA 4930505O20 gene
Gm39209 8 80512544 to 80526165 13621 + lncRNA gene predicted gene, 39209
Gm46044 8 80525705 to 80592537 66832 - lncRNA gene predicted gene, 46044
Frem3 8 80611080 to 80695356 84276 + protein coding gene Fras1 related extracellular matrix protein 3
Cpgi20628 8 80611186 to 80611821 635 CpG island CpG island 20628
D8Ertd572e 8 80646485 to 80646707 222 DNA segment DNA segment, Chr 8, ERATO Doi 572, expressed
Smarca5 8 80699943 to 80739459 39516 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Tssr81904 8 80700631 to 80700636 5 - TSS region transcription start site region 81904
Gm45872 8 80727554 to 80729137 1583 - unclassified gene predicted gene 45872
Cpgi20629 8 80738313 to 80739328 1015 CpG island CpG island 20629
Tssr81905 8 80739030 to 80739058 28 - TSS region transcription start site region 81905
Tssr81906 8 80739299 to 80739338 39 - TSS region transcription start site region 81906
Cpgi20630 8 80739627 to 80740197 570 CpG island CpG island 20630
D8Mit344 8 80743245 to 80743344 99 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 344
Gab1 8 80764438 to 80880519 116081 - protein coding gene growth factor receptor bound protein 2-associated protein 1
Tssr78157 8 80770592 to 80770597 5 + TSS region transcription start site region 78157
Gm7997 8 80770691 to 80771670 979 + pseudogene predicted gene 7997
Tssr81907 8 80788656 to 80788688 32 - TSS region transcription start site region 81907
Tssr81908 8 80788821 to 80788853 32 - TSS region transcription start site region 81908
Tssr81909 8 80788935 to 80788947 12 - TSS region transcription start site region 81909
Tssr81910 8 80800357 to 80800380 23 - TSS region transcription start site region 81910
Tssr78158 8 80811600 to 80811602 2 + TSS region transcription start site region 78158
Tssr81911 8 80835326 to 80835331 5 - TSS region transcription start site region 81911
Tssr81912 8 80859236 to 80859252 16 - TSS region transcription start site region 81912
Tssr81913 8 80859259 to 80859269 10 - TSS region transcription start site region 81913
Tssr78159 8 80859373 to 80859384 11 + TSS region transcription start site region 78159
Tssr78160 8 80859385 to 80859409 24 + TSS region transcription start site region 78160
1700019H22Rik 8 80859385 to 80860003 618 unclassified gene RIKEN cDNA 1700019H22 gene
Tssr81914 8 80859826 to 80859829 3 - TSS region transcription start site region 81914
Tssr81915 8 80861101 to 80861119 18 - TSS region transcription start site region 81915
Tssr81916 8 80869143 to 80869152 9 - TSS region transcription start site region 81916
Tssr81917 8 80869156 to 80869204 48 - TSS region transcription start site region 81917
Tssr81918 8 80869244 to 80869255 11 - TSS region transcription start site region 81918
Cpgi20631 8 80879105 to 80881002 1897 CpG island CpG island 20631
Tssr81919 8 80879780 to 80879801 21 - TSS region transcription start site region 81919
Tssr81920 8 80879890 to 80879926 36 - TSS region transcription start site region 81920
Tssr81921 8 80879929 to 80879946 17 - TSS region transcription start site region 81921
Gm31105 8 80879940 to 80881169 1229 + antisense lncRNA gene predicted gene, 31105
Tssr81922 8 80880161 to 80880249 88 - TSS region transcription start site region 81922
Tssr81923 8 80880274 to 80880306 32 - TSS region transcription start site region 81923
Tssr81924 8 80880309 to 80880327 18 - TSS region transcription start site region 81924
Tssr81925 8 80880463 to 80880471 8 - TSS region transcription start site region 81925
Tssr81926 8 80880480 to 80880499 19 - TSS region transcription start site region 81926
Tssr81927 8 80880507 to 80880534 27 - TSS region transcription start site region 81927
Cpgi20632 8 80915788 to 80916051 263 CpG island CpG island 20632
Gm27048 8 80933534 to 80938667 5133 - lincRNA gene predicted gene, 27048
Tssr78161 8 80933603 to 80933608 5 + TSS region transcription start site region 78161
Gm4891 8 80933677 to 80934588 911 + pseudogene predicted gene 4891
D8Mit249 8 80939547 to 80939696 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 249
Skmw16 8 80939547 to 80939696 149 QTL skeletal muscle weight 16
Tssr78162 8 80948948 to 80948966 18 + TSS region transcription start site region 78162
Gm31223 8 80948963 to 80984052 35089 + lncRNA gene predicted gene, 31223
Tssr78163 8 80948994 to 80949000 6 + TSS region transcription start site region 78163
Tssr78164 8 80950107 to 80950111 4 + TSS region transcription start site region 78164
D8Mit135 8 80963583 to 80963782 199 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 135
Cpgi20633 8 80971390 to 80971762 372 CpG island CpG island 20633
Usp38 8 80980733 to 81014928 34195 - protein coding gene ubiquitin specific peptidase 38
Tssr81928 8 81004701 to 81004704 3 - TSS region transcription start site region 81928
Cpgi20634 8 81013851 to 81015418 1567 CpG island CpG island 20634
Tssr81929 8 81014787 to 81014795 8 - TSS region transcription start site region 81929
Tssr81930 8 81014845 to 81014862 17 - TSS region transcription start site region 81930
Tssr81931 8 81014866 to 81014942 76 - TSS region transcription start site region 81931
Tssr78165 8 81015151 to 81015189 38 + TSS region transcription start site region 78165
Tssr78166 8 81015194 to 81015211 17 + TSS region transcription start site region 78166
Gm9725 8 81032374 to 81061276 28902 + antisense lncRNA gene predicted gene 9725
Tssr81932 8 81043408 to 81043423 15 - TSS region transcription start site region 81932
Gm45538 8 81061334 to 81069803 8469 + lincRNA gene predicted gene 45538
Gm4899 8 81197630 to 81198348 718 - pseudogene predicted gene 4899
Gm45539 8 81294636 to 81295063 427 - pseudogene predicted gene 45539
Gm5354 8 81308177 to 81309149 972 - pseudogene predicted gene 5354
D8Mit263 8 81310865 to 81310989 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 263
Cpgi20635 8 81342007 to 81343033 1026 CpG island CpG island 20635
Tssr78167 8 81342501 to 81342510 9 + TSS region transcription start site region 78167
Tssr78168 8 81342524 to 81342545 21 + TSS region transcription start site region 78168
Inpp4b 8 81342556 to 82127914 785358 + protein coding gene inositol polyphosphate-4-phosphatase, type II
Tssr78169 8 81342561 to 81342575 14 + TSS region transcription start site region 78169
Tssr78170 8 81342607 to 81342617 10 + TSS region transcription start site region 78170
Tssr78171 8 81342701 to 81342718 17 + TSS region transcription start site region 78171
Tssr78172 8 81353166 to 81353168 2 + TSS region transcription start site region 78172
Tssr78173 8 81364224 to 81364225 1 + TSS region transcription start site region 78173
D8Mit235 8 81408279 to 81408403 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 235
Tssr81933 8 81491881 to 81491886 5 - TSS region transcription start site region 81933
D8Mit102 8 81498125 to 81498272 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 102
Tssr78174 8 81498664 to 81498667 3 + TSS region transcription start site region 78174
5830456J23Rik 8 81517923 to 81519167 1244 unclassified gene RIKEN cDNA 5830456J23 gene
Tssr78175 8 81558885 to 81558896 11 + TSS region transcription start site region 78175
Tssr78176 8 81558968 to 81558972 4 + TSS region transcription start site region 78176
Tssr78177 8 81559002 to 81559011 9 + TSS region transcription start site region 78177
Tssr78178 8 81559033 to 81559050 17 + TSS region transcription start site region 78178
4930579O11Rik 8 81665876 to 81667118 1242 - unclassified gene RIKEN cDNA 4930579O11 gene
Tssr78179 8 81667186 to 81667193 7 + TSS region transcription start site region 78179
Tssr78180 8 81731838 to 81731854 16 + TSS region transcription start site region 78180
Tssr78181 8 81756896 to 81756912 16 + TSS region transcription start site region 78181
Tssr78182 8 81766332 to 81766339 7 + TSS region transcription start site region 78182
Tssr78183 8 81766537 to 81766581 44 + TSS region transcription start site region 78183
Tssr78184 8 81767574 to 81767584 10 + TSS region transcription start site region 78184
Tssr78185 8 81767626 to 81767650 24 + TSS region transcription start site region 78185
Tssr78186 8 81767673 to 81767685 12 + TSS region transcription start site region 78186
Tssr78187 8 81767751 to 81767763 12 + TSS region transcription start site region 78187
Tssr78188 8 81767792 to 81767806 14 + TSS region transcription start site region 78188
Tssr78189 8 81767914 to 81767996 82 + TSS region transcription start site region 78189
Tssr78190 8 81768061 to 81768105 44 + TSS region transcription start site region 78190
Tssr78191 8 81768142 to 81768149 7 + TSS region transcription start site region 78191
Tssr78192 8 81768498 to 81768508 10 + TSS region transcription start site region 78192
Tssr78193 8 81768524 to 81768532 8 + TSS region transcription start site region 78193
Tssr78194 8 81769358 to 81769369 11 + TSS region transcription start site region 78194
Tssr78195 8 81770069 to 81770088 19 + TSS region transcription start site region 78195
Tssr78196 8 81770111 to 81770121 10 + TSS region transcription start site region 78196
Tssr78197 8 81770571 to 81770576 5 + TSS region transcription start site region 78197
Tssr78198 8 81770682 to 81770689 7 + TSS region transcription start site region 78198
Tssr78199 8 81770722 to 81770739 17 + TSS region transcription start site region 78199
Tssr78200 8 81773105 to 81773120 15 + TSS region transcription start site region 78200
Tssr78201 8 81775677 to 81775690 13 + TSS region transcription start site region 78201
Tssr78202 8 81775742 to 81775760 18 + TSS region transcription start site region 78202
Tssr78203 8 81775795 to 81775811 16 + TSS region transcription start site region 78203
Tssr78204 8 81775855 to 81775871 16 + TSS region transcription start site region 78204
Tssr78205 8 81779924 to 81779926 2 + TSS region transcription start site region 78205
Tssr81934 8 81780569 to 81780574 5 - TSS region transcription start site region 81934
Gm17169 8 81790558 to 81790908 350 - pseudogene predicted gene 17169
D8Mit262 8 81816938 to 81817062 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 262
Tssr81935 8 81823124 to 81823173 49 - TSS region transcription start site region 81935
Tssr78206 8 81825125 to 81825162 37 + TSS region transcription start site region 78206
Gm17072 8 81827698 to 81828355 657 + pseudogene predicted gene 17072
Tssr81936 8 81854667 to 81854679 12 - TSS region transcription start site region 81936
Tssr81937 8 81854686 to 81854693 7 - TSS region transcription start site region 81937
Tssr78207 8 81856054 to 81856066 12 + TSS region transcription start site region 78207
Tssr78208 8 81856324 to 81856376 52 + TSS region transcription start site region 78208
Tssr78209 8 81856378 to 81856399 21 + TSS region transcription start site region 78209
Tssr78210 8 81861678 to 81861686 8 + TSS region transcription start site region 78210
Tssr78211 8 81871565 to 81871572 7 + TSS region transcription start site region 78211
Tssr78212 8 81872216 to 81872219 3 + TSS region transcription start site region 78212
Tssr81938 8 81882011 to 81882014 3 - TSS region transcription start site region 81938