Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:79355302-81295328

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smad1 8 79338395 to 79399468 61073 - protein coding gene SMAD family member 1
Tssr78134 8 79356120 to 79356151 31 + TSS region transcription start site region 78134
Tssr81875 8 79356461 to 79356493 32 - TSS region transcription start site region 81875
Tssr81876 8 79372646 to 79372669 23 - TSS region transcription start site region 81876
Tssr81877 8 79374537 to 79374548 11 - TSS region transcription start site region 81877
Gm30389 8 79394726 to 79404683 9957 + lncRNA gene predicted gene, 30389
Cpgi20623 8 79398204 to 79399788 1584 CpG island CpG island 20623
Tssr81878 8 79399417 to 79399435 18 - TSS region transcription start site region 81878
Tssr81879 8 79399451 to 79399462 11 - TSS region transcription start site region 81879
Tssr81880 8 79399467 to 79399472 5 - TSS region transcription start site region 81880
Tssr81881 8 79399476 to 79399481 5 - TSS region transcription start site region 81881
Tssr81882 8 79399499 to 79399510 11 - TSS region transcription start site region 81882
Tssr81883 8 79399513 to 79399532 19 - TSS region transcription start site region 81883
Gm45601 8 79404148 to 79411216 7068 + lincRNA gene predicted gene 45601
Gm39205 8 79440341 to 79448774 8433 + lncRNA gene predicted gene, 39205
Tssr78135 8 79458874 to 79458875 1 + TSS region transcription start site region 78135
Gm39288 8 79489741 to 79490186 445 - pseudogene predicted gene, 39288
Gm45602 8 79491142 to 79499737 8595 + lincRNA gene predicted gene 45602
Gm8077 8 79497155 to 79498178 1023 - pseudogene predicted gene 8077
Tssr78136 8 79546286 to 79546332 46 + TSS region transcription start site region 78136
Gm8079 8 79549774 to 79550748 974 - pseudogene predicted gene 8079
Tssr81884 8 79638711 to 79638717 6 - TSS region transcription start site region 81884
Cpgi20624 8 79638747 to 79640439 1692 CpG island CpG island 20624
Tssr78137 8 79639351 to 79639398 47 + TSS region transcription start site region 78137
Tssr78138 8 79639399 to 79639424 25 + TSS region transcription start site region 78138
Tssr78139 8 79639426 to 79639471 45 + TSS region transcription start site region 78139
Tssr78140 8 79639492 to 79639519 27 + TSS region transcription start site region 78140
Tssr78141 8 79639642 to 79639730 88 + TSS region transcription start site region 78141
Otud4 8 79639676 to 79677755 38079 + protein coding gene OTU domain containing 4
Tssr78142 8 79639763 to 79639780 17 + TSS region transcription start site region 78142
Tssr78143 8 79640176 to 79640187 11 + TSS region transcription start site region 78143
Tssr78144 8 79640195 to 79640218 23 + TSS region transcription start site region 78144
Tssr78145 8 79640223 to 79640241 18 + TSS region transcription start site region 78145
Tssr78146 8 79663737 to 79663755 18 + TSS region transcription start site region 78146
Tpd52-ps 8 79680284 to 79680806 522 - pseudogene tumor protein D52, pseudogene
Cpgi20625 8 79680526 to 79680964 438 CpG island CpG island 20625
Tssr81885 8 79680826 to 79680829 3 - TSS region transcription start site region 81885
Abce1 8 79683462 to 79711740 28278 - protein coding gene ATP-binding cassette, sub-family E (OABP), member 1
Gm27006 8 79705597 to 79706539 942 + pseudogene predicted gene, 27006
Cpgi20626 8 79711168 to 79712078 910 CpG island CpG island 20626
Tssr81886 8 79711620 to 79711630 10 - TSS region transcription start site region 81886
Tssr81887 8 79711631 to 79711695 64 - TSS region transcription start site region 81887
Tssr78147 8 79711741 to 79711789 48 + TSS region transcription start site region 78147
Tssr78148 8 79711792 to 79711827 35 + TSS region transcription start site region 78148
Anapc10 8 79711820 to 79779059 67239 + protein coding gene anaphase promoting complex subunit 10
Tssr78149 8 79711833 to 79711884 51 + TSS region transcription start site region 78149
Tssr78150 8 79711894 to 79711910 16 + TSS region transcription start site region 78150
Tssr81888 8 79712743 to 79712746 3 - TSS region transcription start site region 81888
Tssr78151 8 79712912 to 79712924 12 + TSS region transcription start site region 78151
Tssr78152 8 79712950 to 79712965 15 + TSS region transcription start site region 78152
Gm45435 8 79747267 to 79752413 5146 - antisense lncRNA gene predicted gene 45435
Tssr78153 8 79750018 to 79750020 2 + TSS region transcription start site region 78153
Gm45434 8 79772878 to 79773170 292 - pseudogene predicted gene 45434
Gm45433 8 79803365 to 79803611 246 - pseudogene predicted gene 45433
Gm30494 8 79836777 to 79845820 9043 + lncRNA gene predicted gene, 30494
Gm45432 8 79863664 to 79864079 415 - pseudogene predicted gene 45432
Tssr81889 8 79864099 to 79864118 19 - TSS region transcription start site region 81889
n-TKctt20 8 79909278 to 79909350 72 + tRNA gene nuclear encoded tRNA lysine 20 (anticodon TTT)
Hhip 8 79965851 to 80058006 92155 - protein coding gene Hedgehog-interacting protein
Gm27820 8 79970390 to 79970564 174 + unclassified non-coding RNA gene predicted gene, 27820
Gm39206 8 80002398 to 80007412 5014 + lncRNA gene predicted gene, 39206
D8Mit134 8 80032536 to 80032655 119 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 134
Cpgi20627 8 80057223 to 80058559 1336 CpG island CpG island 20627
Tssr81890 8 80057506 to 80057564 58 - TSS region transcription start site region 81890
Tssr81891 8 80057989 to 80058017 28 - TSS region transcription start site region 81891
Cfq10 8 80066775 to 89014359 8947584 QTL conditioned fear QTL 10
Gm33096 8 80086205 to 80086697 492 - pseudogene predicted gene, 33096
Gm5909 8 80110806 to 80112086 1280 - pseudogene predicted gene 5909
Gm45431 8 80128194 to 80138667 10473 - lincRNA gene predicted gene 45431
D8Mit146 8 80146537 to 80146655 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 146
Gm30552 8 80168697 to 80177911 9214 + lncRNA gene predicted gene, 30552
Gm45430 8 80195199 to 80197656 2457 + lincRNA gene predicted gene 45430
Gm39208 8 80284843 to 80303069 18226 + lncRNA gene predicted gene, 39208
Tssr81892 8 80292277 to 80292279 2 - TSS region transcription start site region 81892
Gm30660 8 80312967 to 80326758 13791 - lncRNA gene predicted gene, 30660
Tssr81893 8 80325302 to 80325328 26 - TSS region transcription start site region 81893
Gm30605 8 80328624 to 80395214 66590 - lncRNA gene predicted gene, 30605
Tssr81894 8 80392302 to 80392306 4 - TSS region transcription start site region 81894
Tssr81895 8 80395057 to 80395062 5 - TSS region transcription start site region 81895
Tssr81896 8 80395102 to 80395109 7 - TSS region transcription start site region 81896
Tssr81897 8 80395114 to 80395119 5 - TSS region transcription start site region 81897
Tssr81898 8 80395129 to 80395134 5 - TSS region transcription start site region 81898
Tssr81899 8 80395152 to 80395165 13 - TSS region transcription start site region 81899
Tssr81900 8 80395177 to 80395192 15 - TSS region transcription start site region 81900
Tssr81901 8 80395200 to 80395205 5 - TSS region transcription start site region 81901
Tssr81902 8 80395214 to 80395228 14 - TSS region transcription start site region 81902
Tssr81903 8 80395237 to 80395240 3 - TSS region transcription start site region 81903
Tgq18 8 80460107 to 80460107 0 QTL triglyceride QTL 18
Tssr2614 8 80493970 to 80493979 9 + TSS region transcription start site region 2614
Tssr78154 8 80494032 to 80494065 33 + TSS region transcription start site region 78154
Gypa 8 80494045 to 80510785 16740 + protein coding gene glycophorin A
Tssr78155 8 80494251 to 80494255 4 + TSS region transcription start site region 78155
Tssr78156 8 80496294 to 80496311 17 + TSS region transcription start site region 78156
4930505O20Rik 8 80512489 to 80514490 2001 - antisense lncRNA gene RIKEN cDNA 4930505O20 gene
Gm39209 8 80512544 to 80526165 13621 + lncRNA gene predicted gene, 39209
Gm46044 8 80525705 to 80592537 66832 - lncRNA gene predicted gene, 46044
Frem3 8 80611080 to 80695356 84276 + protein coding gene Fras1 related extracellular matrix protein 3
Cpgi20628 8 80611186 to 80611821 635 CpG island CpG island 20628
D8Ertd572e 8 80646485 to 80646707 222 DNA segment DNA segment, Chr 8, ERATO Doi 572, expressed
Smarca5 8 80699943 to 80739459 39516 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Tssr81904 8 80700631 to 80700636 5 - TSS region transcription start site region 81904
Gm45872 8 80727554 to 80729137 1583 - unclassified gene predicted gene 45872
Cpgi20629 8 80738313 to 80739328 1015 CpG island CpG island 20629
Tssr81905 8 80739030 to 80739058 28 - TSS region transcription start site region 81905
Tssr81906 8 80739299 to 80739338 39 - TSS region transcription start site region 81906
Cpgi20630 8 80739627 to 80740197 570 CpG island CpG island 20630
D8Mit344 8 80743245 to 80743344 99 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 344
Gab1 8 80764438 to 80880519 116081 - protein coding gene growth factor receptor bound protein 2-associated protein 1
Tssr78157 8 80770592 to 80770597 5 + TSS region transcription start site region 78157
Gm7997 8 80770691 to 80771670 979 + pseudogene predicted gene 7997
Tssr81907 8 80788656 to 80788688 32 - TSS region transcription start site region 81907
Tssr81908 8 80788821 to 80788853 32 - TSS region transcription start site region 81908
Tssr81909 8 80788935 to 80788947 12 - TSS region transcription start site region 81909
Tssr81910 8 80800357 to 80800380 23 - TSS region transcription start site region 81910
Tssr78158 8 80811600 to 80811602 2 + TSS region transcription start site region 78158
Tssr81911 8 80835326 to 80835331 5 - TSS region transcription start site region 81911
Tssr81912 8 80859236 to 80859252 16 - TSS region transcription start site region 81912
Tssr81913 8 80859259 to 80859269 10 - TSS region transcription start site region 81913
Tssr78159 8 80859373 to 80859384 11 + TSS region transcription start site region 78159
Tssr78160 8 80859385 to 80859409 24 + TSS region transcription start site region 78160
1700019H22Rik 8 80859385 to 80860003 618 unclassified gene RIKEN cDNA 1700019H22 gene
Tssr81914 8 80859826 to 80859829 3 - TSS region transcription start site region 81914
Tssr81915 8 80861101 to 80861119 18 - TSS region transcription start site region 81915
Tssr81916 8 80869143 to 80869152 9 - TSS region transcription start site region 81916
Tssr81917 8 80869156 to 80869204 48 - TSS region transcription start site region 81917
Tssr81918 8 80869244 to 80869255 11 - TSS region transcription start site region 81918
Cpgi20631 8 80879105 to 80881002 1897 CpG island CpG island 20631
Tssr81919 8 80879780 to 80879801 21 - TSS region transcription start site region 81919
Tssr81920 8 80879890 to 80879926 36 - TSS region transcription start site region 81920
Tssr81921 8 80879929 to 80879946 17 - TSS region transcription start site region 81921
Gm31105 8 80879940 to 80881169 1229 + antisense lncRNA gene predicted gene, 31105
Tssr81922 8 80880161 to 80880249 88 - TSS region transcription start site region 81922
Tssr81923 8 80880274 to 80880306 32 - TSS region transcription start site region 81923
Tssr81924 8 80880309 to 80880327 18 - TSS region transcription start site region 81924
Tssr81925 8 80880463 to 80880471 8 - TSS region transcription start site region 81925
Tssr81926 8 80880480 to 80880499 19 - TSS region transcription start site region 81926
Tssr81927 8 80880507 to 80880534 27 - TSS region transcription start site region 81927
Cpgi20632 8 80915788 to 80916051 263 CpG island CpG island 20632
Gm27048 8 80933534 to 80938667 5133 - lincRNA gene predicted gene, 27048
Tssr78161 8 80933603 to 80933608 5 + TSS region transcription start site region 78161
Gm4891 8 80933677 to 80934588 911 + pseudogene predicted gene 4891
Skmw16 8 80939547 to 80939696 149 QTL skeletal muscle weight 16
D8Mit249 8 80939547 to 80939696 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 249
Tssr78162 8 80948948 to 80948966 18 + TSS region transcription start site region 78162
Gm31223 8 80948963 to 80984052 35089 + lncRNA gene predicted gene, 31223
Tssr78163 8 80948994 to 80949000 6 + TSS region transcription start site region 78163
Tssr78164 8 80950107 to 80950111 4 + TSS region transcription start site region 78164
D8Mit135 8 80963583 to 80963782 199 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 135
Cpgi20633 8 80971390 to 80971762 372 CpG island CpG island 20633
Usp38 8 80980733 to 81014928 34195 - protein coding gene ubiquitin specific peptidase 38
Tssr81928 8 81004701 to 81004704 3 - TSS region transcription start site region 81928
Cpgi20634 8 81013851 to 81015418 1567 CpG island CpG island 20634
Tssr81929 8 81014787 to 81014795 8 - TSS region transcription start site region 81929
Tssr81930 8 81014845 to 81014862 17 - TSS region transcription start site region 81930
Tssr81931 8 81014866 to 81014942 76 - TSS region transcription start site region 81931
Tssr78165 8 81015151 to 81015189 38 + TSS region transcription start site region 78165
Tssr78166 8 81015194 to 81015211 17 + TSS region transcription start site region 78166
Gm9725 8 81032374 to 81061276 28902 + antisense lncRNA gene predicted gene 9725
Tssr81932 8 81043408 to 81043423 15 - TSS region transcription start site region 81932
Gm45538 8 81061334 to 81069803 8469 + lincRNA gene predicted gene 45538
Gm4899 8 81197630 to 81198348 718 - pseudogene predicted gene 4899
Gm45539 8 81294636 to 81295063 427 - pseudogene predicted gene 45539