Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:77729399-79449401

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4933431K23Rik 8 77610860 to 77769682 158822 + lncRNA gene RIKEN cDNA 4933431K23 gene
Gm39201 8 77728853 to 77735012 6159 - lncRNA gene predicted gene, 39201
Tssr78106 8 77744534 to 77744541 7 + TSS region transcription start site region 78106
Gm29845 8 77759747 to 77764880 5133 - lncRNA gene predicted gene, 29845
D8Mit74 8 77786850 to 77786976 126 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 74
Orch6 8 77786850 to 77786976 126 QTL autoimmune orchitis resistance 6
Gm23981 8 77807535 to 77807640 105 + snRNA gene predicted gene, 23981
Tssr81856 8 77947837 to 77947842 5 - TSS region transcription start site region 81856
Tssr2611 8 77955855 to 77955864 9 + TSS region transcription start site region 2611
Tssr78107 8 78013949 to 78013960 11 + TSS region transcription start site region 78107
Tssr78108 8 78013984 to 78014018 34 + TSS region transcription start site region 78108
Gm29895 8 78045072 to 78055451 10379 + lincRNA gene predicted gene, 29895
D8Mit301 8 78062825 to 78062937 112 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 301
Tssr78109 8 78066304 to 78066334 30 + TSS region transcription start site region 78109
Tssr78110 8 78066335 to 78066348 13 + TSS region transcription start site region 78110
Gm6360 8 78072451 to 78073588 1137 + lncRNA gene predicted gene 6360
Gm45288 8 78107960 to 78108110 150 + pseudogene predicted gene 45288
Tssr81857 8 78147378 to 78147393 15 - TSS region transcription start site region 81857
Tssr81858 8 78147460 to 78147468 8 - TSS region transcription start site region 81858
Gm45574 8 78197519 to 78197849 330 - pseudogene predicted gene 45574
Gm39202 8 78204128 to 78213186 9058 - lncRNA gene predicted gene, 39202
Tssr78111 8 78213292 to 78213371 79 + TSS region transcription start site region 78111
Ttc29 8 78213302 to 78394326 181024 + protein coding gene tetratricopeptide repeat domain 29
Tssr78112 8 78330737 to 78330776 39 + TSS region transcription start site region 78112
Tssr81859 8 78355050 to 78355054 4 - TSS region transcription start site region 81859
Tssr78113 8 78390956 to 78390975 19 + TSS region transcription start site region 78113
Tssr78114 8 78390976 to 78390987 11 + TSS region transcription start site region 78114
Cpgi20612 8 78420243 to 78420526 283 CpG island CpG island 20612
Cpgi20613 8 78427590 to 78427776 186 CpG island CpG island 20613
D8Mit162 8 78427884 to 78428030 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 162
Pou4f2 8 78433010 to 78436645 3635 - protein coding gene POU domain, class 4, transcription factor 2
Cpgi20614 8 78434725 to 78437687 2962 CpG island CpG island 20614
Tssr81860 8 78436640 to 78436649 9 - TSS region transcription start site region 81860
Tssr81861 8 78437321 to 78437344 23 - TSS region transcription start site region 81861
Cpgi20615 8 78438021 to 78438314 293 CpG island CpG island 20615
Gm2225 8 78486034 to 78486410 376 - pseudogene predicted gene 2225
Rbmxl1 8 78505269 to 78508898 3629 - protein coding gene RNA binding motif protein, X-linked like-1
Cpgi20616 8 78508315 to 78509946 1631 CpG island CpG island 20616
Tssr78115 8 78508621 to 78508632 11 + TSS region transcription start site region 78115
Tssr81862 8 78508861 to 78508865 4 - TSS region transcription start site region 81862
Tssr81863 8 78508876 to 78508909 33 - TSS region transcription start site region 81863
Tssr78116 8 78509319 to 78509399 80 + TSS region transcription start site region 78116
Slc10a7 8 78509346 to 78734003 224657 + protein coding gene solute carrier family 10 (sodium/bile acid cotransporter family), member 7
Tssr78117 8 78509406 to 78509417 11 + TSS region transcription start site region 78117
Tssr78118 8 78509422 to 78509436 14 + TSS region transcription start site region 78118
Tssr78119 8 78589399 to 78589401 2 + TSS region transcription start site region 78119
Gm2253 8 78604294 to 78604707 413 + pseudogene predicted gene 2253
Cpgi20617 8 78630484 to 78630645 161 CpG island CpG island 20617
Gm39203 8 78675558 to 78678997 3439 + lncRNA gene predicted gene, 39203
D8Mit103 8 78700043 to 78700145 102 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 103
Tssr78120 8 78733531 to 78733534 3 + TSS region transcription start site region 78120
D8Mit345.2 8 78742112 to 78742266 154 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 345.2
D8Mit345 8 78742253 to 78742360 107 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 345
Gm47209 8 78754916 to 78774545 19629 - pseudogene predicted gene, 47209
Gm45446 8 78778002 to 78778217 215 - pseudogene predicted gene 45446
Lsm6 8 78804865 to 78821140 16275 - protein coding gene LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Tssr81864 8 78810221 to 78810235 14 - TSS region transcription start site region 81864
Tssr81865 8 78810282 to 78810295 13 - TSS region transcription start site region 81865
Tssr81866 8 78813085 to 78813118 33 - TSS region transcription start site region 81866
Tssr81867 8 78813189 to 78813200 11 - TSS region transcription start site region 81867
Tssr81868 8 78813210 to 78813275 65 - TSS region transcription start site region 81868
Cpgi20618 8 78820664 to 78821279 615 CpG island CpG island 20618
Tssr81869 8 78821078 to 78821119 41 - TSS region transcription start site region 81869
Tssr81870 8 78821136 to 78821143 7 - TSS region transcription start site region 81870
Gm8054 8 78869402 to 78869869 467 - pseudogene predicted pseudogene 8054
Gm45326 8 78950851 to 78953914 3063 - lincRNA gene predicted gene 45326
Gm8056 8 78986229 to 78987093 864 - pseudogene predicted gene 8056
Tssr78121 8 78993256 to 78993258 2 + TSS region transcription start site region 78121
Gm39204 8 79007038 to 79014022 6984 + lincRNA gene predicted gene, 39204
Gm22044 8 79014364 to 79014470 106 - snRNA gene predicted gene, 22044
Tssr78122 8 79017543 to 79017554 11 + TSS region transcription start site region 78122
Cpgi20619 8 79027902 to 79028429 527 CpG island CpG island 20619
Tssr78123 8 79027969 to 79027978 9 + TSS region transcription start site region 78123
Tssr78124 8 79028178 to 79028237 59 + TSS region transcription start site region 78124
Tssr78125 8 79028253 to 79028309 56 + TSS region transcription start site region 78125
Tssr78126 8 79028317 to 79028350 33 + TSS region transcription start site region 78126
Tssr2612 8 79028351 to 79028366 15 + TSS region transcription start site region 2612
Zfp827 8 79028437 to 79193766 165329 + protein coding gene zinc finger protein 827
Tssr78127 8 79028565 to 79028613 48 + TSS region transcription start site region 78127
Tssr78128 8 79028629 to 79028654 25 + TSS region transcription start site region 78128
Cpgi20620 8 79028687 to 79031083 2396 CpG island CpG island 20620
D8Mit76 8 79048082 to 79048196 114 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 76
C030019G06Rik 8 79082476 to 79087720 5244 unclassified gene RIKEN cDNA C030019G06 gene
D8Mit306 8 79167250 to 79167373 123 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 306
Gm45728 8 79174185 to 79177163 2978 + unclassified gene predicted gene 45728
Gm30271 8 79181407 to 79203571 22164 - lncRNA gene predicted gene, 30271
Cpgi20621 8 79209856 to 79210277 421 CpG island CpG island 20621
1700011L22Rik 8 79210431 to 79248570 38139 - protein coding gene RIKEN cDNA 1700011L22 gene
Tssr78129 8 79225829 to 79225865 36 + TSS region transcription start site region 78129
Tssr78130 8 79225869 to 79225918 49 + TSS region transcription start site region 78130
Tssr78131 8 79225926 to 79225939 13 + TSS region transcription start site region 78131
Gm30329 8 79225930 to 79233224 7294 + antisense lncRNA gene predicted gene, 30329
Tssr81871 8 79248537 to 79248565 28 - TSS region transcription start site region 81871
Tssr2613 8 79248573 to 79248580 7 - TSS region transcription start site region 2613
Tssr81872 8 79248839 to 79248842 3 - TSS region transcription start site region 81872
Mmaa 8 79264498 to 79294980 30482 - protein coding gene methylmalonic aciduria (cobalamin deficiency) type A
Cpgi20622 8 79294392 to 79295475 1083 CpG island CpG island 20622
Tssr81873 8 79294703 to 79294736 33 - TSS region transcription start site region 81873
Tssr81874 8 79294928 to 79294961 33 - TSS region transcription start site region 81874
Tssr78132 8 79295018 to 79295035 17 + TSS region transcription start site region 78132
Gm4890 8 79295078 to 79307774 12696 + bidirectional promoter lncRNA gene predicted gene 4890
Tssr78133 8 79304256 to 79304261 5 + TSS region transcription start site region 78133
Smad1 8 79338395 to 79399468 61073 - protein coding gene SMAD family member 1
Tssr78134 8 79356120 to 79356151 31 + TSS region transcription start site region 78134
Tssr81875 8 79356461 to 79356493 32 - TSS region transcription start site region 81875
Tssr81876 8 79372646 to 79372669 23 - TSS region transcription start site region 81876
Tssr81877 8 79374537 to 79374548 11 - TSS region transcription start site region 81877
Gm30389 8 79394726 to 79404683 9957 + lncRNA gene predicted gene, 30389
Cpgi20623 8 79398204 to 79399788 1584 CpG island CpG island 20623
Tssr81878 8 79399417 to 79399435 18 - TSS region transcription start site region 81878
Tssr81879 8 79399451 to 79399462 11 - TSS region transcription start site region 81879
Tssr81880 8 79399467 to 79399472 5 - TSS region transcription start site region 81880
Tssr81881 8 79399476 to 79399481 5 - TSS region transcription start site region 81881
Tssr81882 8 79399499 to 79399510 11 - TSS region transcription start site region 81882
Tssr81883 8 79399513 to 79399532 19 - TSS region transcription start site region 81883
Gm45601 8 79404148 to 79411216 7068 + lincRNA gene predicted gene 45601
Gm39205 8 79440341 to 79448774 8433 + lncRNA gene predicted gene, 39205