Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:76647399-78127417

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10649 8 76795761 to 76821102 25341 - bidirectional promoter lncRNA gene predicted gene 10649
Gm5353 8 76862256 to 76863048 792 - pseudogene predicted gene 5353
Cpgi20605 8 76898834 to 76901054 2220 CpG island CpG island 20605
Tssr78094 8 76899245 to 76899279 34 + TSS region transcription start site region 78094
Tssr78095 8 76899773 to 76899828 55 + TSS region transcription start site region 78095
Tssr78096 8 76899852 to 76899864 12 + TSS region transcription start site region 78096
Nr3c2 8 76900179 to 77244010 343831 + protein coding gene nuclear receptor subfamily 3, group C, member 2
Tssr78097 8 76901543 to 76901556 13 + TSS region transcription start site region 78097
Cpgi20606 8 76901563 to 76902681 1118 CpG island CpG island 20606
Tssr81824 8 76902009 to 76902023 14 - TSS region transcription start site region 81824
Tssr78098 8 76902277 to 76902376 99 + TSS region transcription start site region 78098
Tssr78099 8 77093375 to 77093378 3 + TSS region transcription start site region 78099
Gm24838 8 77146351 to 77146480 129 - snoRNA gene predicted gene, 24838
Cpgi20607 8 77185850 to 77186236 386 CpG island CpG island 20607
Gm23260 8 77194695 to 77194866 171 + snRNA gene predicted gene, 23260
Arhgap10 8 77250366 to 77517953 267587 - protein coding gene Rho GTPase activating protein 10
Gm45406 8 77282861 to 77286207 3346 + antisense lncRNA gene predicted gene 45406
Tssr81825 8 77286902 to 77286906 4 - TSS region transcription start site region 81825
Tssr81826 8 77289956 to 77289978 22 - TSS region transcription start site region 81826
4933421D24Rik 8 77305533 to 77313299 7766 + antisense lncRNA gene RIKEN cDNA 4933421D24 gene
Tssr81827 8 77310937 to 77310947 10 - TSS region transcription start site region 81827
Gm45285 8 77331970 to 77336922 4952 + antisense lncRNA gene predicted gene 45285
Gm45407 8 77368841 to 77372516 3675 - unclassified gene predicted gene 45407
Tssr81828 8 77376219 to 77376223 4 - TSS region transcription start site region 81828
Tssr81829 8 77387305 to 77387324 19 - TSS region transcription start site region 81829
Tssr81830 8 77387399 to 77387417 18 - TSS region transcription start site region 81830
Tssr81831 8 77387489 to 77387502 13 - TSS region transcription start site region 81831
Tssr81832 8 77433255 to 77433266 11 - TSS region transcription start site region 81832
Tssr81833 8 77452087 to 77452091 4 - TSS region transcription start site region 81833
Tssr81834 8 77466060 to 77466071 11 - TSS region transcription start site region 81834
Tssr81835 8 77477212 to 77477221 9 - TSS region transcription start site region 81835
D8Mit342 8 77489471 to 77489575 104 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 342
Cpgi20608 8 77516969 to 77518531 1562 CpG island CpG island 20608
0610038B21Rik 8 77517056 to 77518578 1522 + antisense lncRNA gene RIKEN cDNA 0610038B21 gene
Tssr81836 8 77517875 to 77517892 17 - TSS region transcription start site region 81836
Tssr81837 8 77517898 to 77517938 40 - TSS region transcription start site region 81837
Tssr81838 8 77517949 to 77517979 30 - TSS region transcription start site region 81838
Tssr78100 8 77518097 to 77518131 34 + TSS region transcription start site region 78100
Tssr78101 8 77518324 to 77518327 3 + TSS region transcription start site region 78101
Cpgi20609 8 77549211 to 77549743 532 CpG island CpG island 20609
Tssr78102 8 77549393 to 77549444 51 + TSS region transcription start site region 78102
Prmt9 8 77549397 to 77581338 31941 + protein coding gene protein arginine methyltransferase 9
Tssr78103 8 77549445 to 77549464 19 + TSS region transcription start site region 78103
Tssr78104 8 77554458 to 77554461 3 + TSS region transcription start site region 78104
Gm23468 8 77569495 to 77569602 107 - snRNA gene predicted gene, 23468
Gm45286 8 77574219 to 77575568 1349 + unclassified gene predicted gene 45286
Tmem184c 8 77595982 to 77610698 14716 - protein coding gene transmembrane protein 184C
Tssr81839 8 77597019 to 77597054 35 - TSS region transcription start site region 81839
D8Ertd769e 8 77609507 to 77609748 241 DNA segment DNA segment, Chr 8, ERATO Doi 769, expressed
Cpgi20610 8 77610154 to 77610952 798 CpG island CpG island 20610
Tssr81840 8 77610597 to 77610643 46 - TSS region transcription start site region 81840
Tssr81841 8 77610675 to 77610730 55 - TSS region transcription start site region 81841
Tssr81842 8 77610742 to 77610757 15 - TSS region transcription start site region 81842
4933431K23Rik 8 77610860 to 77769682 158822 + lncRNA gene RIKEN cDNA 4933431K23 gene
Gm39200 8 77612090 to 77621554 9464 + lncRNA gene predicted gene, 39200
1700092C02Rik 8 77624172 to 77628957 4785 + lincRNA gene RIKEN cDNA 1700092C02 gene
Gm45714 8 77659691 to 77662412 2721 + unclassified gene predicted gene 45714
Ednra 8 77663029 to 77724452 61423 - protein coding gene endothelin receptor type A
Tssr81843 8 77670925 to 77670929 4 - TSS region transcription start site region 81843
Tssr81844 8 77689119 to 77689126 7 - TSS region transcription start site region 81844
Tssr2610 8 77689132 to 77689135 3 - TSS region transcription start site region 2610
Tssr81845 8 77689160 to 77689172 12 - TSS region transcription start site region 81845
Tssr81846 8 77689189 to 77689198 9 - TSS region transcription start site region 81846
Tssr81847 8 77689213 to 77689232 19 - TSS region transcription start site region 81847
Tssr78105 8 77723637 to 77723681 44 + TSS region transcription start site region 78105
Cpgi20611 8 77723918 to 77724477 559 CpG island CpG island 20611
Tssr81848 8 77724158 to 77724169 11 - TSS region transcription start site region 81848
Tssr81849 8 77724265 to 77724276 11 - TSS region transcription start site region 81849
Tssr81850 8 77724286 to 77724308 22 - TSS region transcription start site region 81850
Tssr81851 8 77724332 to 77724359 27 - TSS region transcription start site region 81851
Tssr81852 8 77724373 to 77724390 17 - TSS region transcription start site region 81852
Tssr81853 8 77724426 to 77724483 57 - TSS region transcription start site region 81853
Tssr81854 8 77724498 to 77724515 17 - TSS region transcription start site region 81854
Tssr81855 8 77724912 to 77724923 11 - TSS region transcription start site region 81855
Gm39201 8 77728853 to 77735012 6159 - lncRNA gene predicted gene, 39201
Tssr78106 8 77744534 to 77744541 7 + TSS region transcription start site region 78106
Gm29845 8 77759747 to 77764880 5133 - lncRNA gene predicted gene, 29845
Orch6 8 77786850 to 77786976 126 QTL autoimmune orchitis resistance 6
D8Mit74 8 77786850 to 77786976 126 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 74
Gm23981 8 77807535 to 77807640 105 + snRNA gene predicted gene, 23981
Tssr81856 8 77947837 to 77947842 5 - TSS region transcription start site region 81856
Tssr2611 8 77955855 to 77955864 9 + TSS region transcription start site region 2611
Tssr78107 8 78013949 to 78013960 11 + TSS region transcription start site region 78107
Tssr78108 8 78013984 to 78014018 34 + TSS region transcription start site region 78108
Gm29895 8 78045072 to 78055451 10379 + lincRNA gene predicted gene, 29895
D8Mit301 8 78062825 to 78062937 112 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 301
Tssr78109 8 78066304 to 78066334 30 + TSS region transcription start site region 78109
Tssr78110 8 78066335 to 78066348 13 + TSS region transcription start site region 78110
Gm6360 8 78072451 to 78073588 1137 + lncRNA gene predicted gene 6360
Gm45288 8 78107960 to 78108110 150 + pseudogene predicted gene 45288