Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:72303477-72584024

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10282 8 72304110 to 72305260 1150 - pseudogene predicted pseudogene 10282
Tssr77967 8 72311503 to 72311511 8 + TSS region transcription start site region 77967
Cpgi20584 8 72318598 to 72321031 2433 CpG island CpG island 20584
Tssr77968 8 72318881 to 72318892 11 + TSS region transcription start site region 77968
Tssr77969 8 72318893 to 72318915 22 + TSS region transcription start site region 77969
Tssr2606 8 72318900 to 72318908 8 - TSS region transcription start site region 2606
Tssr77970 8 72319053 to 72319071 18 + TSS region transcription start site region 77970
Klf2 8 72319062 to 72321654 2592 + protein coding gene Kruppel-like factor 2 (lung)
Tssr77971 8 72319533 to 72319571 38 + TSS region transcription start site region 77971
Tssr77972 8 72319583 to 72319607 24 + TSS region transcription start site region 77972
Tssr77973 8 72319620 to 72319634 14 + TSS region transcription start site region 77973
Tssr77974 8 72319676 to 72319699 23 + TSS region transcription start site region 77974
Tssr77975 8 72319826 to 72319877 51 + TSS region transcription start site region 77975
Tssr77976 8 72320065 to 72320101 36 + TSS region transcription start site region 77976
Tssr81779 8 72322524 to 72322534 10 - TSS region transcription start site region 81779
Tssr77977 8 72322771 to 72322797 26 + TSS region transcription start site region 77977
Eps15l1 8 72340999 to 72421460 80461 - protein coding gene epidermal growth factor receptor pathway substrate 15-like 1
Tssr77978 8 72350076 to 72350099 23 + TSS region transcription start site region 77978
Tssr81780 8 72351001 to 72351005 4 - TSS region transcription start site region 81780
Tssr77979 8 72351501 to 72351505 4 + TSS region transcription start site region 77979
Tssr81781 8 72361451 to 72361462 11 - TSS region transcription start site region 81781
Tssr81782 8 72377922 to 72377945 23 - TSS region transcription start site region 81782
Tssr81783 8 72386949 to 72386990 41 - TSS region transcription start site region 81783
Tssr81784 8 72387020 to 72387055 35 - TSS region transcription start site region 81784
Tssr81785 8 72388959 to 72388961 2 - TSS region transcription start site region 81785
Tssr81786 8 72393470 to 72393474 4 - TSS region transcription start site region 81786
Gm45779 8 72417409 to 72421472 4063 - unclassified gene predicted gene 45779
Cpgi20585 8 72420675 to 72421980 1305 CpG island CpG island 20585
Tssr81787 8 72421439 to 72421483 44 - TSS region transcription start site region 81787
Gm46043 8 72421540 to 72438567 17027 + lncRNA gene predicted gene, 46043
Calr3 8 72424176 to 72443792 19616 - protein coding gene calreticulin 3
Gm3835 8 72429550 to 72429952 402 - pseudogene predicted pseudogene 3835
Tssr81788 8 72435043 to 72435057 14 - TSS region transcription start site region 81788
Cpgi20586 8 72443477 to 72444024 547 CpG island CpG island 20586
Tssr81789 8 72443703 to 72443760 57 - TSS region transcription start site region 81789
Tssr81790 8 72443772 to 72443784 12 - TSS region transcription start site region 81790
Tssr77980 8 72443874 to 72443953 79 + TSS region transcription start site region 77980
1700030K09Rik 8 72443880 to 72460541 16661 + protein coding gene RIKEN cDNA 1700030K09 gene
D8Mit101 8 72457221 to 72457366 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 101
Cherp 8 72460489 to 72475226 14737 - protein coding gene calcium homeostasis endoplasmic reticulum protein
Tssr81791 8 72464244 to 72464257 13 - TSS region transcription start site region 81791
Mir7068 8 72470016 to 72470089 73 - miRNA gene microRNA 7068
Cpgi20587 8 72474535 to 72475667 1132 CpG island CpG island 20587
Tssr81792 8 72474790 to 72474855 65 - TSS region transcription start site region 81792
Tssr81793 8 72475093 to 72475102 9 - TSS region transcription start site region 81793
Tssr81794 8 72475114 to 72475168 54 - TSS region transcription start site region 81794
Tssr81795 8 72475212 to 72475244 32 - TSS region transcription start site region 81795
Tssr77981 8 72475338 to 72475395 57 + TSS region transcription start site region 77981
Slc35e1 8 72480641 to 72492614 11973 - protein coding gene solute carrier family 35, member E1
Tssr81796 8 72487110 to 72487133 23 - TSS region transcription start site region 81796
Cpgi20588 8 72491573 to 72493279 1706 CpG island CpG island 20588
Tssr81797 8 72491672 to 72491685 13 - TSS region transcription start site region 81797
Tssr81798 8 72491686 to 72491706 20 - TSS region transcription start site region 81798
Tssr77982 8 72491819 to 72491839 20 + TSS region transcription start site region 77982
Tssr77983 8 72491847 to 72491862 15 + TSS region transcription start site region 77983
Tssr77984 8 72492223 to 72492265 42 + TSS region transcription start site region 77984
Tssr81799 8 72492592 to 72492662 70 - TSS region transcription start site region 81799
Tssr77985 8 72492915 to 72492951 36 + TSS region transcription start site region 77985
Gm17435 8 72492934 to 72505499 12565 + antisense lncRNA gene predicted gene, 17435
Tssr77986 8 72492982 to 72492993 11 + TSS region transcription start site region 77986
Tssr77987 8 72493015 to 72493024 9 + TSS region transcription start site region 77987
Med26 8 72494561 to 72548270 53709 - protein coding gene mediator complex subunit 26
Tssr77988 8 72515267 to 72515287 20 + TSS region transcription start site region 77988
Gm18646 8 72515358 to 72516420 1062 + pseudogene predicted gene, 18646
Tssr77989 8 72530969 to 72531003 34 + TSS region transcription start site region 77989
Gm35857 8 72531031 to 72531208 177 + pseudogene predicted gene, 35857
Gm28019 8 72541480 to 72541580 100 - miRNA gene predicted gene, 28019
Carg3 8 72545028 to 72545028 0 QTL Candida albicans resistance gene 3
Cpgi20589 8 72547452 to 72549261 1809 CpG island CpG island 20589
Tssr81800 8 72548224 to 72548287 63 - TSS region transcription start site region 81800
Tssr81801 8 72548345 to 72548354 9 - TSS region transcription start site region 81801
Tssr77990 8 72548394 to 72548424 30 + TSS region transcription start site region 77990
Gm46042 8 72548406 to 72559318 10912 + lncRNA gene predicted gene, 46042
1700085D22Rik 8 72548415 to 72551682 3267 unclassified gene RIKEN cDNA 1700085D22 gene
Tssr77991 8 72548459 to 72548470 11 + TSS region transcription start site region 77991
Tssr77992 8 72548499 to 72548583 84 + TSS region transcription start site region 77992
Smim7 8 72565198 to 72571048 5850 - protein coding gene small integral membrane protein 7
Cpgi20590 8 72570634 to 72571485 851 CpG island CpG island 20590
Tssr81802 8 72571033 to 72571067 34 - TSS region transcription start site region 81802
Tssr77993 8 72571179 to 72571226 47 + TSS region transcription start site region 77993
Cpgi20591 8 72571795 to 72572629 834 CpG island CpG island 20591
Tssr77994 8 72572013 to 72572024 11 + TSS region transcription start site region 77994
Tssr77995 8 72572027 to 72572059 32 + TSS region transcription start site region 77995
Tmem38a 8 72572055 to 72587282 15227 + protein coding gene transmembrane protein 38A
Tssr77996 8 72572069 to 72572114 45 + TSS region transcription start site region 77996
Tssr77997 8 72573643 to 72573650 7 + TSS region transcription start site region 77997
Tssr77998 8 72573681 to 72573694 13 + TSS region transcription start site region 77998