Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:72300579-73140583

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137 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40505 8 72300466 to 72302154 1688 + lncRNA gene predicted gene, 40505
Gm10282 8 72304110 to 72305260 1150 - pseudogene predicted pseudogene 10282
Tssr77967 8 72311503 to 72311511 8 + TSS region transcription start site region 77967
Cpgi20584 8 72318598 to 72321031 2433 CpG island CpG island 20584
Tssr77968 8 72318881 to 72318892 11 + TSS region transcription start site region 77968
Tssr77969 8 72318893 to 72318915 22 + TSS region transcription start site region 77969
Tssr2606 8 72318900 to 72318908 8 - TSS region transcription start site region 2606
Tssr77970 8 72319053 to 72319071 18 + TSS region transcription start site region 77970
Klf2 8 72319062 to 72321654 2592 + protein coding gene Kruppel-like factor 2 (lung)
Tssr77971 8 72319533 to 72319571 38 + TSS region transcription start site region 77971
Tssr77972 8 72319583 to 72319607 24 + TSS region transcription start site region 77972
Tssr77973 8 72319620 to 72319634 14 + TSS region transcription start site region 77973
Tssr77974 8 72319676 to 72319699 23 + TSS region transcription start site region 77974
Tssr77975 8 72319826 to 72319877 51 + TSS region transcription start site region 77975
Tssr77976 8 72320065 to 72320101 36 + TSS region transcription start site region 77976
Tssr81779 8 72322524 to 72322534 10 - TSS region transcription start site region 81779
Tssr77977 8 72322771 to 72322797 26 + TSS region transcription start site region 77977
Eps15l1 8 72340999 to 72421460 80461 - protein coding gene epidermal growth factor receptor pathway substrate 15-like 1
Tssr77978 8 72350076 to 72350099 23 + TSS region transcription start site region 77978
Tssr81780 8 72351001 to 72351005 4 - TSS region transcription start site region 81780
Tssr77979 8 72351501 to 72351505 4 + TSS region transcription start site region 77979
Tssr81781 8 72361451 to 72361462 11 - TSS region transcription start site region 81781
Tssr81782 8 72377922 to 72377945 23 - TSS region transcription start site region 81782
Tssr81783 8 72386949 to 72386990 41 - TSS region transcription start site region 81783
Tssr81784 8 72387020 to 72387055 35 - TSS region transcription start site region 81784
Tssr81785 8 72388959 to 72388961 2 - TSS region transcription start site region 81785
Tssr81786 8 72393470 to 72393474 4 - TSS region transcription start site region 81786
Gm45779 8 72417409 to 72421472 4063 - unclassified gene predicted gene 45779
Cpgi20585 8 72420675 to 72421980 1305 CpG island CpG island 20585
Tssr81787 8 72421439 to 72421483 44 - TSS region transcription start site region 81787
Gm46043 8 72421540 to 72438567 17027 + lncRNA gene predicted gene, 46043
Calr3 8 72424176 to 72443792 19616 - protein coding gene calreticulin 3
Gm3835 8 72429550 to 72429952 402 - pseudogene predicted pseudogene 3835
Tssr81788 8 72435043 to 72435057 14 - TSS region transcription start site region 81788
Cpgi20586 8 72443477 to 72444024 547 CpG island CpG island 20586
Tssr81789 8 72443703 to 72443760 57 - TSS region transcription start site region 81789
Tssr81790 8 72443772 to 72443784 12 - TSS region transcription start site region 81790
Tssr77980 8 72443874 to 72443953 79 + TSS region transcription start site region 77980
1700030K09Rik 8 72443880 to 72460541 16661 + protein coding gene RIKEN cDNA 1700030K09 gene
D8Mit101 8 72457221 to 72457366 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 101
Cherp 8 72460489 to 72475226 14737 - protein coding gene calcium homeostasis endoplasmic reticulum protein
Tssr81791 8 72464244 to 72464257 13 - TSS region transcription start site region 81791
Mir7068 8 72470016 to 72470089 73 - miRNA gene microRNA 7068
Cpgi20587 8 72474535 to 72475667 1132 CpG island CpG island 20587
Tssr81792 8 72474790 to 72474855 65 - TSS region transcription start site region 81792
Tssr81793 8 72475093 to 72475102 9 - TSS region transcription start site region 81793
Tssr81794 8 72475114 to 72475168 54 - TSS region transcription start site region 81794
Tssr81795 8 72475212 to 72475244 32 - TSS region transcription start site region 81795
Tssr77981 8 72475338 to 72475395 57 + TSS region transcription start site region 77981
Slc35e1 8 72480641 to 72492614 11973 - protein coding gene solute carrier family 35, member E1
Tssr81796 8 72487110 to 72487133 23 - TSS region transcription start site region 81796
Cpgi20588 8 72491573 to 72493279 1706 CpG island CpG island 20588
Tssr81797 8 72491672 to 72491685 13 - TSS region transcription start site region 81797
Tssr81798 8 72491686 to 72491706 20 - TSS region transcription start site region 81798
Tssr77982 8 72491819 to 72491839 20 + TSS region transcription start site region 77982
Tssr77983 8 72491847 to 72491862 15 + TSS region transcription start site region 77983
Tssr77984 8 72492223 to 72492265 42 + TSS region transcription start site region 77984
Tssr81799 8 72492592 to 72492662 70 - TSS region transcription start site region 81799
Tssr77985 8 72492915 to 72492951 36 + TSS region transcription start site region 77985
Gm17435 8 72492934 to 72505499 12565 + antisense lncRNA gene predicted gene, 17435
Tssr77986 8 72492982 to 72492993 11 + TSS region transcription start site region 77986
Tssr77987 8 72493015 to 72493024 9 + TSS region transcription start site region 77987
Med26 8 72494561 to 72548270 53709 - protein coding gene mediator complex subunit 26
Tssr77988 8 72515267 to 72515287 20 + TSS region transcription start site region 77988
Gm18646 8 72515358 to 72516420 1062 + pseudogene predicted gene, 18646
Tssr77989 8 72530969 to 72531003 34 + TSS region transcription start site region 77989
Gm35857 8 72531031 to 72531208 177 + pseudogene predicted gene, 35857
Gm28019 8 72541480 to 72541580 100 - miRNA gene predicted gene, 28019
Carg3 8 72545028 to 72545028 0 QTL Candida albicans resistance gene 3
Cpgi20589 8 72547452 to 72549261 1809 CpG island CpG island 20589
Tssr81800 8 72548224 to 72548287 63 - TSS region transcription start site region 81800
Tssr81801 8 72548345 to 72548354 9 - TSS region transcription start site region 81801
Tssr77990 8 72548394 to 72548424 30 + TSS region transcription start site region 77990
Gm46042 8 72548406 to 72559318 10912 + lncRNA gene predicted gene, 46042
1700085D22Rik 8 72548415 to 72551682 3267 unclassified gene RIKEN cDNA 1700085D22 gene
Tssr77991 8 72548459 to 72548470 11 + TSS region transcription start site region 77991
Tssr77992 8 72548499 to 72548583 84 + TSS region transcription start site region 77992
Smim7 8 72565198 to 72571048 5850 - protein coding gene small integral membrane protein 7
Cpgi20590 8 72570634 to 72571485 851 CpG island CpG island 20590
Tssr81802 8 72571033 to 72571067 34 - TSS region transcription start site region 81802
Tssr77993 8 72571179 to 72571226 47 + TSS region transcription start site region 77993
Cpgi20591 8 72571795 to 72572629 834 CpG island CpG island 20591
Tssr77994 8 72572013 to 72572024 11 + TSS region transcription start site region 77994
Tssr77995 8 72572027 to 72572059 32 + TSS region transcription start site region 77995
Tmem38a 8 72572055 to 72587282 15227 + protein coding gene transmembrane protein 38A
Tssr77996 8 72572069 to 72572114 45 + TSS region transcription start site region 77996
Tssr77997 8 72573643 to 72573650 7 + TSS region transcription start site region 77997
Tssr77998 8 72573681 to 72573694 13 + TSS region transcription start site region 77998
Tssr77999 8 72584085 to 72584116 31 + TSS region transcription start site region 77999
Tssr78000 8 72584707 to 72584718 11 + TSS region transcription start site region 78000
Tssr78001 8 72586157 to 72586194 37 + TSS region transcription start site region 78001
Nwd1 8 72646225 to 72716880 70655 + protein coding gene NACHT and WD repeat domain containing 1
Tssr78002 8 72646420 to 72646430 10 + TSS region transcription start site region 78002
Tssr78003 8 72646441 to 72646452 11 + TSS region transcription start site region 78003
Tssr78004 8 72646500 to 72646518 18 + TSS region transcription start site region 78004
Tssr78005 8 72646574 to 72646596 22 + TSS region transcription start site region 78005
Tssr78006 8 72646616 to 72646628 12 + TSS region transcription start site region 78006
Tssr78007 8 72646645 to 72646660 15 + TSS region transcription start site region 78007
Tssr78008 8 72646679 to 72646725 46 + TSS region transcription start site region 78008
Tssr78009 8 72646728 to 72646781 53 + TSS region transcription start site region 78009
Gm26237 8 72684314 to 72684438 124 + miRNA gene predicted gene, 26237
Tssr78010 8 72687196 to 72687208 12 + TSS region transcription start site region 78010
Tssr78011 8 72688386 to 72688397 11 + TSS region transcription start site region 78011
Tssr78012 8 72688426 to 72688439 13 + TSS region transcription start site region 78012
Tssr78013 8 72688455 to 72688466 11 + TSS region transcription start site region 78013
Tssr78014 8 72688479 to 72688498 19 + TSS region transcription start site region 78014
A730056I06Rik 8 72714926 to 72717875 2949 unclassified gene RIKEN cDNA A730056I06 gene
Tssr78015 8 72720579 to 72720583 4 + TSS region transcription start site region 78015
D8Mit194 8 72722240 to 72722385 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 194
Cpgi20592 8 72723117 to 72724101 984 CpG island CpG island 20592
Tssr78016 8 72723281 to 72723293 12 + TSS region transcription start site region 78016
Sin3b 8 72723285 to 72758201 34916 + protein coding gene transcriptional regulator, SIN3B (yeast)
Tssr81803 8 72723901 to 72723942 41 - TSS region transcription start site region 81803
Tssr78017 8 72725600 to 72725621 21 + TSS region transcription start site region 78017
Tssr78018 8 72741724 to 72741737 13 + TSS region transcription start site region 78018
Tssr78019 8 72741800 to 72741808 8 + TSS region transcription start site region 78019
Tssr78020 8 72741863 to 72741876 13 + TSS region transcription start site region 78020
Cpgi20593 8 72749757 to 72750013 256 CpG island CpG island 20593
Cpgi20594 8 72756748 to 72757445 697 CpG island CpG island 20594
Tssr78021 8 72761868 to 72761896 28 + TSS region transcription start site region 78021
F2rl3 8 72761880 to 72763874 1994 + protein coding gene coagulation factor II (thrombin) receptor-like 3
Cpgi20595 8 72762595 to 72762849 254 CpG island CpG island 20595
D8Mit133 8 72763829 to 72763978 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 133
Gm45705 8 72765481 to 72767614 2133 + unclassified gene predicted gene 45705
Gm45706 8 72765481 to 72767616 2135 - unclassified gene predicted gene 45706
Gm39198 8 72766388 to 72784995 18607 - lncRNA gene predicted gene, 39198
Gm45704 8 72771658 to 72784333 12675 - pseudogene predicted gene 45704
Tssr2607 8 72772905 to 72772908 3 + TSS region transcription start site region 2607
Gm45791 8 72795136 to 72795487 351 - pseudogene predicted gene 45791
Large1 8 72814599 to 73353540 538941 - protein coding gene LARGE xylosyl- and glucuronyltransferase 1
Tssr81804 8 72835983 to 72836020 37 - TSS region transcription start site region 81804
D8Mit303 8 72849157 to 72849275 118 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 303
D8Mit341 8 72952849 to 72952995 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 341
Tssr81805 8 72988520 to 72988539 19 - TSS region transcription start site region 81805
Tssr81806 8 72998346 to 72998347 1 - TSS region transcription start site region 81806
Mir28b 8 73016512 to 73016591 79 + miRNA gene microRNA 28b
B930093H17Rik 8 73087956 to 73091175 3219 unclassified gene RIKEN cDNA B930093H17 gene