Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71685988-71958713

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Jak3 8 71676383 to 71690577 14194 + protein coding gene Janus kinase 3
Cpgi20565 8 71685216 to 71687289 2073 CpG island CpG island 20565
Tssr77913 8 71686734 to 71686774 40 + TSS region transcription start site region 77913
Tssr77914 8 71686788 to 71686808 20 + TSS region transcription start site region 77914
Tssr77915 8 71687223 to 71687241 18 + TSS region transcription start site region 77915
Cpgi20566 8 71687980 to 71688227 247 CpG island CpG island 20566
Cpgi20567 8 71689070 to 71689541 471 CpG island CpG island 20567
Tssr77916 8 71689244 to 71689258 14 + TSS region transcription start site region 77916
Insl3 8 71689252 to 71690577 1325 + protein coding gene insulin-like 3
Cpgi20568 8 71689887 to 71690454 567 CpG island CpG island 20568
Tssr77917 8 71690218 to 71690229 11 + TSS region transcription start site region 77917
Tssr77918 8 71690382 to 71690401 19 + TSS region transcription start site region 77918
Tssr77919 8 71690483 to 71690537 54 + TSS region transcription start site region 77919
Tssr81747 8 71690572 to 71690574 2 - TSS region transcription start site region 81747
B3gnt3 8 71690756 to 71701789 11033 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Cpgi20569 8 71692481 to 71694135 1654 CpG island CpG island 20569
Tssr77920 8 71692910 to 71692922 12 + TSS region transcription start site region 77920
Tssr81748 8 71693822 to 71693857 35 - TSS region transcription start site region 81748
Gm45756 8 71695608 to 71696014 406 + pseudogene predicted gene 45756
Cpgi20570 8 71701455 to 71701836 381 CpG island CpG island 20570
Tssr81749 8 71701742 to 71701754 12 - TSS region transcription start site region 81749
Tssr81750 8 71701762 to 71701784 22 - TSS region transcription start site region 81750
Tssr81751 8 71701796 to 71701841 45 - TSS region transcription start site region 81751
Tssr81752 8 71702606 to 71702634 28 - TSS region transcription start site region 81752
Gm18860 8 71704205 to 71704968 763 - pseudogene predicted gene, 18860
D8Mit9 8 71706614 to 71706763 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 9
Im3 8 71706614 to 71706763 149 QTL immunoregulatory 3
Fcho1 8 71708387 to 71725703 17316 - protein coding gene FCH domain only 1
Cpgi20571 8 71708844 to 71709034 190 CpG island CpG island 20571
Cpgi20572 8 71709562 to 71710001 439 CpG island CpG island 20572
Tssr81753 8 71717208 to 71717217 9 - TSS region transcription start site region 81753
Tssr81754 8 71719227 to 71719238 11 - TSS region transcription start site region 81754
Tssr81755 8 71721815 to 71721819 4 - TSS region transcription start site region 81755
Tssr81756 8 71722030 to 71722034 4 - TSS region transcription start site region 81756
Tssr81757 8 71723287 to 71723298 11 - TSS region transcription start site region 81757
Tssr81758 8 71723308 to 71723357 49 - TSS region transcription start site region 81758
Cpgi20573 8 71725053 to 71725858 805 CpG island CpG island 20573
Tssr81759 8 71725650 to 71725684 34 - TSS region transcription start site region 81759
Tssr81760 8 71725696 to 71725736 40 - TSS region transcription start site region 81760
Cpgi20574 8 71741652 to 71742021 369 CpG island CpG island 20574
Gm35572 8 71751873 to 71756195 4322 - lincRNA gene predicted gene, 35572
Tssr77921 8 71757454 to 71757468 14 + TSS region transcription start site region 77921
Tssr81761 8 71757585 to 71757597 12 - TSS region transcription start site region 81761
Gm29705 8 71760118 to 71760591 473 + pseudogene predicted gene, 29705
Tssr77922 8 71780592 to 71780601 9 + TSS region transcription start site region 77922
Tssr77923 8 71789245 to 71789260 15 + TSS region transcription start site region 77923
Gm40504 8 71815988 to 71828713 12725 + lncRNA gene predicted gene, 40504
Gm5373 8 71824641 to 71857281 32640 - protein coding gene predicted gene 5373
D8Mit72b 8 71856596 to 71856755 159 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72b
D8Mit27b 8 71856637 to 71856827 190 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27b
Vmn2r-ps91 8 71877780 to 71878563 783 + pseudogene vomeronasal 2, receptor, pseudogene 91
Cpgi20575 8 71881596 to 71882333 737 CpG island CpG island 20575
Tssr77924 8 71881725 to 71881780 55 + TSS region transcription start site region 77924
Tssr77925 8 71881961 to 71882006 45 + TSS region transcription start site region 77925
Tssr77926 8 71882035 to 71882046 11 + TSS region transcription start site region 77926
Tssr77927 8 71882060 to 71882120 60 + TSS region transcription start site region 77927
Zfp709 8 71882068 to 71892565 10497 + protein coding gene zinc finger protein 709
Cpgi20576 8 71908455 to 71909129 674 CpG island CpG island 20576
Tssr77928 8 71908595 to 71908654 59 + TSS region transcription start site region 77928
Zfp882 8 71908608 to 71916354 7746 + protein coding gene zinc finger protein 882
Tssr77929 8 71908677 to 71908687 10 + TSS region transcription start site region 77929
Ccnb2-ps 8 71917069 to 71917989 920 - pseudogene cyclin B2, pseudogene
Cpgi20577 8 71922549 to 71923361 812 CpG island CpG island 20577
Tssr77930 8 71922810 to 71922835 25 + TSS region transcription start site region 77930
Zfp617 8 71922825 to 71934630 11805 + protein coding gene zinc finger protein 617
Tssr77931 8 71922885 to 71922901 16 + TSS region transcription start site region 77931
Cpgi20578 8 71950795 to 71951374 579 CpG island CpG island 20578
Tssr77932 8 71951054 to 71951130 76 + TSS region transcription start site region 77932
Zfp961 8 71951066 to 71970333 19267 + protein coding gene zinc finger protein 961
Tssr77933 8 71957721 to 71957724 3 + TSS region transcription start site region 77933