Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71608677-72208687

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20553 8 71610883 to 71612083 1200 CpG island CpG island 20553
Colgalt1 8 71610998 to 71624911 13913 + protein coding gene collagen beta(1-O)galactosyltransferase 1
Tssr77899 8 71611102 to 71611157 55 + TSS region transcription start site region 77899
Tssr77900 8 71611160 to 71611200 40 + TSS region transcription start site region 77900
Tssr77901 8 71611203 to 71611212 9 + TSS region transcription start site region 77901
Tssr77902 8 71611230 to 71611249 19 + TSS region transcription start site region 77902
Tssr77903 8 71611250 to 71611260 10 + TSS region transcription start site region 77903
Tssr77904 8 71612144 to 71612163 19 + TSS region transcription start site region 77904
Tssr77905 8 71624028 to 71624058 30 + TSS region transcription start site region 77905
Unc13a 8 71626712 to 71671775 45063 - protein coding gene unc-13 homolog A
Cpgi20554 8 71628958 to 71630522 1564 CpG island CpG island 20554
Tssr77906 8 71629459 to 71629509 50 + TSS region transcription start site region 77906
Gm39195 8 71629524 to 71630910 1386 + lncRNA gene predicted gene, 39195
Mir6769b 8 71631047 to 71631106 59 - miRNA gene microRNA 6769b
Cpgi20555 8 71633102 to 71633506 404 CpG island CpG island 20555
Cpgi20556 8 71634423 to 71634715 292 CpG island CpG island 20556
Cpgi20557 8 71654748 to 71655176 428 CpG island CpG island 20557
Cpgi20558 8 71660397 to 71661093 696 CpG island CpG island 20558
Tssr81744 8 71665464 to 71665476 12 - TSS region transcription start site region 81744
Tssr81745 8 71665554 to 71665581 27 - TSS region transcription start site region 81745
Cpgi20559 8 71668235 to 71668545 310 CpG island CpG island 20559
Tssr77907 8 71668403 to 71668411 8 + TSS region transcription start site region 77907
Cpgi20560 8 71670581 to 71672041 1460 CpG island CpG island 20560
Tssr81746 8 71671723 to 71671772 49 - TSS region transcription start site region 81746
Tssr77908 8 71671815 to 71671853 38 + TSS region transcription start site region 77908
Cpgi20561 8 71676228 to 71676757 529 CpG island CpG island 20561
Tssr77909 8 71676233 to 71676254 21 + TSS region transcription start site region 77909
Tssr2605 8 71676276 to 71676315 39 + TSS region transcription start site region 2605
Jak3 8 71676383 to 71690577 14194 + protein coding gene Janus kinase 3
Tssr77910 8 71676472 to 71676492 20 + TSS region transcription start site region 77910
Tssr77911 8 71676501 to 71676580 79 + TSS region transcription start site region 77911
Tssr77912 8 71678314 to 71678321 7 + TSS region transcription start site region 77912
Cpgi20562 8 71679160 to 71680102 942 CpG island CpG island 20562
Cpgi20563 8 71680427 to 71680847 420 CpG island CpG island 20563
Cpgi20564 8 71684393 to 71684583 190 CpG island CpG island 20564
Cpgi20565 8 71685216 to 71687289 2073 CpG island CpG island 20565
Tssr77913 8 71686734 to 71686774 40 + TSS region transcription start site region 77913
Tssr77914 8 71686788 to 71686808 20 + TSS region transcription start site region 77914
Tssr77915 8 71687223 to 71687241 18 + TSS region transcription start site region 77915
Cpgi20566 8 71687980 to 71688227 247 CpG island CpG island 20566
Cpgi20567 8 71689070 to 71689541 471 CpG island CpG island 20567
Tssr77916 8 71689244 to 71689258 14 + TSS region transcription start site region 77916
Insl3 8 71689252 to 71690577 1325 + protein coding gene insulin-like 3
Cpgi20568 8 71689887 to 71690454 567 CpG island CpG island 20568
Tssr77917 8 71690218 to 71690229 11 + TSS region transcription start site region 77917
Tssr77918 8 71690382 to 71690401 19 + TSS region transcription start site region 77918
Tssr77919 8 71690483 to 71690537 54 + TSS region transcription start site region 77919
Tssr81747 8 71690572 to 71690574 2 - TSS region transcription start site region 81747
B3gnt3 8 71690756 to 71701789 11033 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Cpgi20569 8 71692481 to 71694135 1654 CpG island CpG island 20569
Tssr77920 8 71692910 to 71692922 12 + TSS region transcription start site region 77920
Tssr81748 8 71693822 to 71693857 35 - TSS region transcription start site region 81748
Gm45756 8 71695608 to 71696014 406 + pseudogene predicted gene 45756
Cpgi20570 8 71701455 to 71701836 381 CpG island CpG island 20570
Tssr81749 8 71701742 to 71701754 12 - TSS region transcription start site region 81749
Tssr81750 8 71701762 to 71701784 22 - TSS region transcription start site region 81750
Tssr81751 8 71701796 to 71701841 45 - TSS region transcription start site region 81751
Tssr81752 8 71702606 to 71702634 28 - TSS region transcription start site region 81752
Gm18860 8 71704205 to 71704968 763 - pseudogene predicted gene, 18860
Im3 8 71706614 to 71706763 149 QTL immunoregulatory 3
D8Mit9 8 71706614 to 71706763 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 9
Fcho1 8 71708387 to 71725703 17316 - protein coding gene FCH domain only 1
Cpgi20571 8 71708844 to 71709034 190 CpG island CpG island 20571
Cpgi20572 8 71709562 to 71710001 439 CpG island CpG island 20572
Tssr81753 8 71717208 to 71717217 9 - TSS region transcription start site region 81753
Tssr81754 8 71719227 to 71719238 11 - TSS region transcription start site region 81754
Tssr81755 8 71721815 to 71721819 4 - TSS region transcription start site region 81755
Tssr81756 8 71722030 to 71722034 4 - TSS region transcription start site region 81756
Tssr81757 8 71723287 to 71723298 11 - TSS region transcription start site region 81757
Tssr81758 8 71723308 to 71723357 49 - TSS region transcription start site region 81758
Cpgi20573 8 71725053 to 71725858 805 CpG island CpG island 20573
Tssr81759 8 71725650 to 71725684 34 - TSS region transcription start site region 81759
Tssr81760 8 71725696 to 71725736 40 - TSS region transcription start site region 81760
Cpgi20574 8 71741652 to 71742021 369 CpG island CpG island 20574
Gm35572 8 71751873 to 71756195 4322 - lincRNA gene predicted gene, 35572
Tssr77921 8 71757454 to 71757468 14 + TSS region transcription start site region 77921
Tssr81761 8 71757585 to 71757597 12 - TSS region transcription start site region 81761
Gm29705 8 71760118 to 71760591 473 + pseudogene predicted gene, 29705
Tssr77922 8 71780592 to 71780601 9 + TSS region transcription start site region 77922
Tssr77923 8 71789245 to 71789260 15 + TSS region transcription start site region 77923
Gm40504 8 71815988 to 71828713 12725 + lncRNA gene predicted gene, 40504
Gm5373 8 71824641 to 71857281 32640 - protein coding gene predicted gene 5373
D8Mit72b 8 71856596 to 71856755 159 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72b
D8Mit27b 8 71856637 to 71856827 190 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27b
Vmn2r-ps91 8 71877780 to 71878563 783 + pseudogene vomeronasal 2, receptor, pseudogene 91
Cpgi20575 8 71881596 to 71882333 737 CpG island CpG island 20575
Tssr77924 8 71881725 to 71881780 55 + TSS region transcription start site region 77924
Tssr77925 8 71881961 to 71882006 45 + TSS region transcription start site region 77925
Tssr77926 8 71882035 to 71882046 11 + TSS region transcription start site region 77926
Tssr77927 8 71882060 to 71882120 60 + TSS region transcription start site region 77927
Zfp709 8 71882068 to 71892565 10497 + protein coding gene zinc finger protein 709
Cpgi20576 8 71908455 to 71909129 674 CpG island CpG island 20576
Tssr77928 8 71908595 to 71908654 59 + TSS region transcription start site region 77928
Zfp882 8 71908608 to 71916354 7746 + protein coding gene zinc finger protein 882
Tssr77929 8 71908677 to 71908687 10 + TSS region transcription start site region 77929
Ccnb2-ps 8 71917069 to 71917989 920 - pseudogene cyclin B2, pseudogene
Cpgi20577 8 71922549 to 71923361 812 CpG island CpG island 20577
Tssr77930 8 71922810 to 71922835 25 + TSS region transcription start site region 77930
Zfp617 8 71922825 to 71934630 11805 + protein coding gene zinc finger protein 617
Tssr77931 8 71922885 to 71922901 16 + TSS region transcription start site region 77931
Cpgi20578 8 71950795 to 71951374 579 CpG island CpG island 20578
Tssr77932 8 71951054 to 71951130 76 + TSS region transcription start site region 77932
Zfp961 8 71951066 to 71970333 19267 + protein coding gene zinc finger protein 961
Tssr77933 8 71957721 to 71957724 3 + TSS region transcription start site region 77933
Gm45694 8 71983903 to 71987153 3250 + unclassified gene predicted gene 45694
Cpgi20579 8 71988446 to 71988827 381 CpG island CpG island 20579
Cyp4f18 8 71988482 to 72009626 21144 - protein coding gene cytochrome P450, family 4, subfamily f, polypeptide 18
Tssr81762 8 72002531 to 72002547 16 - TSS region transcription start site region 81762
Tssr81763 8 72002549 to 72002561 12 - TSS region transcription start site region 81763
Tssr81764 8 72002581 to 72002588 7 - TSS region transcription start site region 81764
Tssr81765 8 72002623 to 72002633 10 - TSS region transcription start site region 81765
Tssr77934 8 72008530 to 72008563 33 + TSS region transcription start site region 77934
Tssr81766 8 72009619 to 72009634 15 - TSS region transcription start site region 81766
Gm45734 8 72035245 to 72035655 410 + pseudogene predicted gene 45734
Gm18924 8 72036069 to 72036588 519 - pseudogene predicted gene, 18924
Gm25052 8 72037642 to 72037799 157 + snRNA gene predicted gene, 25052
Gm45544 8 72047428 to 72047515 87 + pseudogene predicted gene 45544
Olfr372 8 72057660 to 72058675 1015 + protein coding gene olfactory receptor 372
Gm45735 8 72078774 to 72079092 318 - pseudogene predicted gene 45735
Gm45543 8 72089668 to 72089755 87 + pseudogene predicted gene 45543
Olfr373 8 72099762 to 72100706 944 + protein coding gene olfactory receptor 373
Olfr374 8 72107040 to 72110509 3469 + protein coding gene olfactory receptor 374
Gm24747 8 72111234 to 72111320 86 + rRNA gene predicted gene, 24747
Gm39196 8 72118451 to 72125924 7473 - lncRNA gene predicted gene, 39196
Cpgi20580 8 72134884 to 72136361 1477 CpG island CpG island 20580
Tssr77935 8 72135247 to 72135264 17 + TSS region transcription start site region 77935
Tssr77936 8 72135279 to 72135294 15 + TSS region transcription start site region 77936
Tpm4 8 72135292 to 72153129 17837 + protein coding gene tropomyosin 4
Tssr77937 8 72135302 to 72135314 12 + TSS region transcription start site region 77937
Tssr81767 8 72135731 to 72135766 35 - TSS region transcription start site region 81767
Tssr77938 8 72135763 to 72135828 65 + TSS region transcription start site region 77938
Tssr77939 8 72135842 to 72135866 24 + TSS region transcription start site region 77939
Tssr81768 8 72136729 to 72136751 22 - TSS region transcription start site region 81768
Tssr81769 8 72136774 to 72136789 15 - TSS region transcription start site region 81769
Tssr81770 8 72136798 to 72136815 17 - TSS region transcription start site region 81770
Gm26586 8 72137389 to 72140820 3431 - antisense lncRNA gene predicted gene, 26586
Tssr77940 8 72138629 to 72138665 36 + TSS region transcription start site region 77940
Tssr77941 8 72144536 to 72144545 9 + TSS region transcription start site region 77941
Tssr77942 8 72144559 to 72144585 26 + TSS region transcription start site region 77942
Tssr77943 8 72144590 to 72144636 46 + TSS region transcription start site region 77943
Tssr77944 8 72144644 to 72144661 17 + TSS region transcription start site region 77944
Tssr77945 8 72144663 to 72144683 20 + TSS region transcription start site region 77945
Gm16091 8 72147601 to 72160855 13254 - unclassified non-coding RNA gene predicted gene 16091
Tssr77946 8 72152562 to 72152584 22 + TSS region transcription start site region 77946
Tssr77947 8 72152596 to 72152610 14 + TSS region transcription start site region 77947
Tssr77948 8 72152624 to 72152636 12 + TSS region transcription start site region 77948
Tssr81771 8 72160545 to 72160552 7 - TSS region transcription start site region 81771
Cpgi20581 8 72160560 to 72161739 1179 CpG island CpG island 20581
Tssr81772 8 72160805 to 72160869 64 - TSS region transcription start site region 81772
Tssr77949 8 72161101 to 72161147 46 + TSS region transcription start site region 77949
Rab8a 8 72161200 to 72181366 20166 + protein coding gene RAB8A, member RAS oncogene family
Tssr77950 8 72161334 to 72161369 35 + TSS region transcription start site region 77950
Tssr81773 8 72162949 to 72162960 11 - TSS region transcription start site region 81773
Tssr77951 8 72169286 to 72169291 5 + TSS region transcription start site region 77951
Tssr77952 8 72183986 to 72183990 4 + TSS region transcription start site region 77952
Tssr77953 8 72189613 to 72189664 51 + TSS region transcription start site region 77953
Hsh2d 8 72189668 to 72200958 11290 + protein coding gene hematopoietic SH2 domain containing
Cib3 8 72204335 to 72212837 8502 - protein coding gene calcium and integrin binding family member 3