Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71505216-71867289

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plvap 8 71497765 to 71511752 13987 - protein coding gene plasmalemma vesicle associated protein
Gm46041 8 71502836 to 71505696 2860 - protein coding gene predicted gene, 46041
Cpgi20539 8 71507294 to 71508533 1239 CpG island CpG island 20539
Tssr81720 8 71507628 to 71507640 12 - TSS region transcription start site region 81720
Tssr81721 8 71507653 to 71507741 88 - TSS region transcription start site region 81721
Tssr81722 8 71507742 to 71507766 24 - TSS region transcription start site region 81722
Cpgi20540 8 71511305 to 71511876 571 CpG island CpG island 20540
Tssr81723 8 71511735 to 71511761 26 - TSS region transcription start site region 81723
Tssr81724 8 71511762 to 71511778 16 - TSS region transcription start site region 81724
Ccdc194 8 71520120 to 71525711 5591 - protein coding gene coiled-coil domain containing 194
Cpgi20541 8 71521695 to 71522076 381 CpG island CpG island 20541
Tssr77864 8 71523520 to 71523527 7 + TSS region transcription start site region 77864
Gm7850 8 71523574 to 71524285 711 + pseudogene predicted gene 7850
Cpgi20542 8 71525317 to 71525866 549 CpG island CpG island 20542
Tssr81725 8 71525701 to 71525713 12 - TSS region transcription start site region 81725
Tssr81726 8 71525719 to 71525730 11 - TSS region transcription start site region 81726
Bst2 8 71534259 to 71537437 3178 - protein coding gene bone marrow stromal cell antigen 2
Tssr77865 8 71534263 to 71534266 3 + TSS region transcription start site region 77865
Tssr81727 8 71534299 to 71534316 17 - TSS region transcription start site region 81727
Tssr81728 8 71535471 to 71535489 18 - TSS region transcription start site region 81728
Cpgi20543 8 71537053 to 71537506 453 CpG island CpG island 20543
Tssr81729 8 71537402 to 71537468 66 - TSS region transcription start site region 81729
Cpgi20544 8 71542625 to 71543584 959 CpG island CpG island 20544
Mvb12a 8 71542879 to 71548026 5147 + protein coding gene multivesicular body subunit 12A
Tssr77866 8 71542911 to 71542973 62 + TSS region transcription start site region 77866
Tssr77867 8 71543157 to 71543173 16 + TSS region transcription start site region 77867
Tssr77868 8 71543176 to 71543214 38 + TSS region transcription start site region 77868
Tmem221 8 71554238 to 71558871 4633 - protein coding gene transmembrane protein 221
Cpgi20545 8 71558089 to 71559466 1377 CpG island CpG island 20545
Tssr81730 8 71558906 to 71558919 13 - TSS region transcription start site region 81730
Tssr81731 8 71558970 to 71558983 13 - TSS region transcription start site region 81731
Tssr81732 8 71558990 to 71559011 21 - TSS region transcription start site region 81732
Tssr77869 8 71559177 to 71559191 14 + TSS region transcription start site region 77869
Nxnl1 8 71560555 to 71566601 6046 - protein coding gene nucleoredoxin-like 1
Cpgi20546 8 71561512 to 71561761 249 CpG island CpG island 20546
Cpgi20547 8 71562510 to 71563186 676 CpG island CpG island 20547
Tssr81733 8 71566604 to 71566612 8 - TSS region transcription start site region 81733
Tssr81734 8 71566615 to 71566626 11 - TSS region transcription start site region 81734
Tssr81735 8 71566627 to 71566632 5 - TSS region transcription start site region 81735
Tssr81736 8 71566633 to 71566640 7 - TSS region transcription start site region 81736
Tssr81737 8 71566641 to 71566652 11 - TSS region transcription start site region 81737
Tssr77870 8 71568866 to 71568931 65 + TSS region transcription start site region 77870
Slc27a1 8 71568882 to 71587302 18420 + protein coding gene solute carrier family 27 (fatty acid transporter), member 1
Tssr77871 8 71568957 to 71568983 26 + TSS region transcription start site region 77871
Cpgi20548 8 71569359 to 71570112 753 CpG island CpG island 20548
Tssr81738 8 71569463 to 71569472 9 - TSS region transcription start site region 81738
Tssr77872 8 71569657 to 71569689 32 + TSS region transcription start site region 77872
Cpgi20549 8 71570261 to 71571081 820 CpG island CpG island 20549
Tssr77873 8 71570581 to 71570601 20 + TSS region transcription start site region 77873
Tssr77874 8 71570617 to 71570631 14 + TSS region transcription start site region 77874
Tssr77875 8 71570667 to 71570725 58 + TSS region transcription start site region 77875
Tssr77876 8 71570726 to 71570823 97 + TSS region transcription start site region 77876
Tssr77877 8 71573994 to 71573999 5 + TSS region transcription start site region 77877
Tssr2604 8 71575909 to 71575913 4 + TSS region transcription start site region 2604
Tssr81739 8 71579044 to 71579049 5 - TSS region transcription start site region 81739
Tssr77878 8 71579232 to 71579237 5 + TSS region transcription start site region 77878
Tssr77879 8 71579263 to 71579300 37 + TSS region transcription start site region 77879
Tssr77880 8 71579306 to 71579320 14 + TSS region transcription start site region 77880
Tssr77881 8 71579329 to 71579347 18 + TSS region transcription start site region 77881
Tssr77882 8 71579413 to 71579448 35 + TSS region transcription start site region 77882
Tssr77883 8 71580429 to 71580446 17 + TSS region transcription start site region 77883
Tssr77884 8 71580463 to 71580481 18 + TSS region transcription start site region 77884
Tssr77885 8 71580483 to 71580506 23 + TSS region transcription start site region 77885
Tssr77886 8 71580516 to 71580526 10 + TSS region transcription start site region 77886
Tssr77887 8 71580528 to 71580565 37 + TSS region transcription start site region 77887
Tssr77888 8 71585930 to 71585957 27 + TSS region transcription start site region 77888
Tssr77889 8 71586115 to 71586128 13 + TSS region transcription start site region 77889
Tssr77890 8 71586479 to 71586526 47 + TSS region transcription start site region 77890
Cpgi20550 8 71591511 to 71593156 1645 CpG island CpG island 20550
Tssr77891 8 71591866 to 71591884 18 + TSS region transcription start site region 77891
Tssr81740 8 71592001 to 71592022 21 - TSS region transcription start site region 81740
Tssr81741 8 71592036 to 71592072 36 - TSS region transcription start site region 81741
Tssr77892 8 71592124 to 71592131 7 + TSS region transcription start site region 77892
Tssr77893 8 71592158 to 71592221 63 + TSS region transcription start site region 77893
Pgls 8 71592184 to 71596267 4083 + protein coding gene 6-phosphogluconolactonase
Tssr77894 8 71592229 to 71592240 11 + TSS region transcription start site region 77894
Tssr81742 8 71592441 to 71592455 14 - TSS region transcription start site region 81742
Tssr81743 8 71592470 to 71592504 34 - TSS region transcription start site region 81743
Tssr77895 8 71592545 to 71592594 49 + TSS region transcription start site region 77895
Cpgi20551 8 71595835 to 71596351 516 CpG island CpG island 20551
Fam129c 8 71597648 to 71607936 10288 + protein coding gene family with sequence similarity 129, member C
Tssr77896 8 71597672 to 71597675 3 + TSS region transcription start site region 77896
Tssr77897 8 71597698 to 71597718 20 + TSS region transcription start site region 77897
Cpgi20552 8 71601794 to 71603282 1488 CpG island CpG island 20552
Tssr77898 8 71602170 to 71602208 38 + TSS region transcription start site region 77898
Cpgi20553 8 71610883 to 71612083 1200 CpG island CpG island 20553
Colgalt1 8 71610998 to 71624911 13913 + protein coding gene collagen beta(1-O)galactosyltransferase 1
Tssr77899 8 71611102 to 71611157 55 + TSS region transcription start site region 77899
Tssr77900 8 71611160 to 71611200 40 + TSS region transcription start site region 77900
Tssr77901 8 71611203 to 71611212 9 + TSS region transcription start site region 77901
Tssr77902 8 71611230 to 71611249 19 + TSS region transcription start site region 77902
Tssr77903 8 71611250 to 71611260 10 + TSS region transcription start site region 77903
Tssr77904 8 71612144 to 71612163 19 + TSS region transcription start site region 77904
Tssr77905 8 71624028 to 71624058 30 + TSS region transcription start site region 77905
Unc13a 8 71626712 to 71671775 45063 - protein coding gene unc-13 homolog A
Cpgi20554 8 71628958 to 71630522 1564 CpG island CpG island 20554
Tssr77906 8 71629459 to 71629509 50 + TSS region transcription start site region 77906
Gm39195 8 71629524 to 71630910 1386 + lncRNA gene predicted gene, 39195
Mir6769b 8 71631047 to 71631106 59 - miRNA gene microRNA 6769b
Cpgi20555 8 71633102 to 71633506 404 CpG island CpG island 20555
Cpgi20556 8 71634423 to 71634715 292 CpG island CpG island 20556
Cpgi20557 8 71654748 to 71655176 428 CpG island CpG island 20557
Cpgi20558 8 71660397 to 71661093 696 CpG island CpG island 20558
Tssr81744 8 71665464 to 71665476 12 - TSS region transcription start site region 81744
Tssr81745 8 71665554 to 71665581 27 - TSS region transcription start site region 81745
Cpgi20559 8 71668235 to 71668545 310 CpG island CpG island 20559
Tssr77907 8 71668403 to 71668411 8 + TSS region transcription start site region 77907
Cpgi20560 8 71670581 to 71672041 1460 CpG island CpG island 20560
Tssr81746 8 71671723 to 71671772 49 - TSS region transcription start site region 81746
Tssr77908 8 71671815 to 71671853 38 + TSS region transcription start site region 77908
Cpgi20561 8 71676228 to 71676757 529 CpG island CpG island 20561
Tssr77909 8 71676233 to 71676254 21 + TSS region transcription start site region 77909
Tssr2605 8 71676276 to 71676315 39 + TSS region transcription start site region 2605
Jak3 8 71676383 to 71690577 14194 + protein coding gene Janus kinase 3
Tssr77910 8 71676472 to 71676492 20 + TSS region transcription start site region 77910
Tssr77911 8 71676501 to 71676580 79 + TSS region transcription start site region 77911
Tssr77912 8 71678314 to 71678321 7 + TSS region transcription start site region 77912
Cpgi20562 8 71679160 to 71680102 942 CpG island CpG island 20562
Cpgi20563 8 71680427 to 71680847 420 CpG island CpG island 20563
Cpgi20564 8 71684393 to 71684583 190 CpG island CpG island 20564
Cpgi20565 8 71685216 to 71687289 2073 CpG island CpG island 20565
Tssr77913 8 71686734 to 71686774 40 + TSS region transcription start site region 77913
Tssr77914 8 71686788 to 71686808 20 + TSS region transcription start site region 77914
Tssr77915 8 71687223 to 71687241 18 + TSS region transcription start site region 77915
Cpgi20566 8 71687980 to 71688227 247 CpG island CpG island 20566
Cpgi20567 8 71689070 to 71689541 471 CpG island CpG island 20567
Tssr77916 8 71689244 to 71689258 14 + TSS region transcription start site region 77916
Insl3 8 71689252 to 71690577 1325 + protein coding gene insulin-like 3
Cpgi20568 8 71689887 to 71690454 567 CpG island CpG island 20568
Tssr77917 8 71690218 to 71690229 11 + TSS region transcription start site region 77917
Tssr77918 8 71690382 to 71690401 19 + TSS region transcription start site region 77918
Tssr77919 8 71690483 to 71690537 54 + TSS region transcription start site region 77919
Tssr81747 8 71690572 to 71690574 2 - TSS region transcription start site region 81747
B3gnt3 8 71690756 to 71701789 11033 - protein coding gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3
Cpgi20569 8 71692481 to 71694135 1654 CpG island CpG island 20569
Tssr77920 8 71692910 to 71692922 12 + TSS region transcription start site region 77920
Tssr81748 8 71693822 to 71693857 35 - TSS region transcription start site region 81748
Gm45756 8 71695608 to 71696014 406 + pseudogene predicted gene 45756
Cpgi20570 8 71701455 to 71701836 381 CpG island CpG island 20570
Tssr81749 8 71701742 to 71701754 12 - TSS region transcription start site region 81749
Tssr81750 8 71701762 to 71701784 22 - TSS region transcription start site region 81750
Tssr81751 8 71701796 to 71701841 45 - TSS region transcription start site region 81751
Tssr81752 8 71702606 to 71702634 28 - TSS region transcription start site region 81752
Gm18860 8 71704205 to 71704968 763 - pseudogene predicted gene, 18860
D8Mit9 8 71706614 to 71706763 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 9
Im3 8 71706614 to 71706763 149 QTL immunoregulatory 3
Fcho1 8 71708387 to 71725703 17316 - protein coding gene FCH domain only 1
Cpgi20571 8 71708844 to 71709034 190 CpG island CpG island 20571
Cpgi20572 8 71709562 to 71710001 439 CpG island CpG island 20572
Tssr81753 8 71717208 to 71717217 9 - TSS region transcription start site region 81753
Tssr81754 8 71719227 to 71719238 11 - TSS region transcription start site region 81754
Tssr81755 8 71721815 to 71721819 4 - TSS region transcription start site region 81755
Tssr81756 8 71722030 to 71722034 4 - TSS region transcription start site region 81756
Tssr81757 8 71723287 to 71723298 11 - TSS region transcription start site region 81757
Tssr81758 8 71723308 to 71723357 49 - TSS region transcription start site region 81758
Cpgi20573 8 71725053 to 71725858 805 CpG island CpG island 20573
Tssr81759 8 71725650 to 71725684 34 - TSS region transcription start site region 81759
Tssr81760 8 71725696 to 71725736 40 - TSS region transcription start site region 81760
Cpgi20574 8 71741652 to 71742021 369 CpG island CpG island 20574
Gm35572 8 71751873 to 71756195 4322 - lincRNA gene predicted gene, 35572
Tssr77921 8 71757454 to 71757468 14 + TSS region transcription start site region 77921
Tssr81761 8 71757585 to 71757597 12 - TSS region transcription start site region 81761
Gm29705 8 71760118 to 71760591 473 + pseudogene predicted gene, 29705
Tssr77922 8 71780592 to 71780601 9 + TSS region transcription start site region 77922
Tssr77923 8 71789245 to 71789260 15 + TSS region transcription start site region 77923
Gm40504 8 71815988 to 71828713 12725 + lncRNA gene predicted gene, 40504
Gm5373 8 71824641 to 71857281 32640 - protein coding gene predicted gene 5373
D8Mit72b 8 71856596 to 71856755 159 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72b
D8Mit27b 8 71856637 to 71856827 190 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27b