Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71274118-71481952

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
Myo9b 8 71272714 to 71360713 87999 + protein coding gene myosin IXb
D8Ertd674e 8 71277819 to 71278025 206 DNA segment DNA segment, Chr 8, ERATO Doi 674, expressed
Aevm1 8 71287817 to 71287993 176 QTL autoimmune extremity vasculitis in MRL mice 1
D8Mit31 8 71287817 to 71287993 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 31
Tssr77840 8 71310680 to 71310710 30 + TSS region transcription start site region 77840
D8Mit233 8 71322450 to 71322762 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 233
Tssr77841 8 71330709 to 71330745 36 + TSS region transcription start site region 77841
Tssr77842 8 71337417 to 71337431 14 + TSS region transcription start site region 77842
Tssr77843 8 71346151 to 71346154 3 + TSS region transcription start site region 77843
Cpgi20521 8 71366824 to 71368094 1270 CpG island CpG island 20521
Use1 8 71366848 to 71369732 2884 + protein coding gene unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Tssr77844 8 71366870 to 71366946 76 + TSS region transcription start site region 77844
Tssr77845 8 71367210 to 71367238 28 + TSS region transcription start site region 77845
Tssr2602 8 71367430 to 71367443 13 - TSS region transcription start site region 2602
Tssr77846 8 71367496 to 71367540 44 + TSS region transcription start site region 77846
Tssr77847 8 71367553 to 71367632 79 + TSS region transcription start site region 77847
Tssr77848 8 71367636 to 71367647 11 + TSS region transcription start site region 77848
Cpgi20522 8 71371199 to 71372100 901 CpG island CpG island 20522
Tssr77849 8 71371283 to 71371359 76 + TSS region transcription start site region 77849
Ocel1 8 71371298 to 71373689 2391 + protein coding gene occludin/ELL domain containing 1
Tssr77850 8 71371633 to 71371644 11 + TSS region transcription start site region 77850
Tssr77851 8 71371775 to 71371822 47 + TSS region transcription start site region 77851
Tssr77852 8 71371825 to 71371832 7 + TSS region transcription start site region 77852
Nr2f6 8 71374118 to 71381952 7834 - protein coding gene nuclear receptor subfamily 2, group F, member 6
Cpgi20523 8 71375412 to 71376632 1220 CpG island CpG island 20523
Cpgi20524 8 71380281 to 71382889 2608 CpG island CpG island 20524
Tssr81700 8 71381445 to 71381482 37 - TSS region transcription start site region 81700
Tssr2603 8 71381617 to 71381692 75 - TSS region transcription start site region 2603
Tssr81701 8 71381693 to 71381714 21 - TSS region transcription start site region 81701
Tssr81702 8 71381907 to 71381977 70 - TSS region transcription start site region 81702
Tssr81703 8 71381993 to 71382004 11 - TSS region transcription start site region 81703
Tssr81704 8 71382068 to 71382079 11 - TSS region transcription start site region 81704
Ushbp1 8 71384272 to 71395802 11530 - protein coding gene USH1 protein network component harmonin binding protein 1
A730052K04Rik 8 71389121 to 71389672 551 unclassified gene RIKEN cDNA A730052K04 gene
Tssr81705 8 71395794 to 71395821 27 - TSS region transcription start site region 81705
Tssr81706 8 71395831 to 71395840 9 - TSS region transcription start site region 81706
2310041K03Rik 8 71396160 to 71396774 614 unclassified gene RIKEN cDNA 2310041K03 gene
Cpgi20525 8 71396767 to 71397149 382 CpG island CpG island 20525
Tssr77853 8 71396853 to 71396891 38 + TSS region transcription start site region 77853
Babam1 8 71396861 to 71404619 7758 + protein coding gene BRISC and BRCA1 A complex member 1
Tssr77854 8 71402782 to 71402800 18 + TSS region transcription start site region 77854
Gm39193 8 71405348 to 71405947 599 - lncRNA gene predicted gene, 39193
Cpgi20526 8 71405597 to 71407025 1428 CpG island CpG island 20526
Tssr81707 8 71405890 to 71405904 14 - TSS region transcription start site region 81707
Tssr77855 8 71406003 to 71406050 47 + TSS region transcription start site region 77855
Ankle1 8 71406010 to 71409904 3894 + protein coding gene ankyrin repeat and LEM domain containing 1
Gm39194 8 71411197 to 71415831 4634 + lncRNA gene predicted gene, 39194
Tel-rs2 8 71431473 to 71446272 14799 unclassified gene telomere, related sequence 2
Abhd8 8 71456705 to 71463655 6950 - protein coding gene abhydrolase domain containing 8
Cpgi20527 8 71456894 to 71457390 496 CpG island CpG island 20527
Cpgi20528 8 71457959 to 71458229 270 CpG island CpG island 20528
Cpgi20529 8 71461211 to 71462001 790 CpG island CpG island 20529
Cpgi20530 8 71463060 to 71463964 904 CpG island CpG island 20530
Tssr81708 8 71463556 to 71463572 16 - TSS region transcription start site region 81708
Tssr81709 8 71463576 to 71463593 17 - TSS region transcription start site region 81709
Tssr81710 8 71463600 to 71463680 80 - TSS region transcription start site region 81710
Tssr81711 8 71463716 to 71463727 11 - TSS region transcription start site region 81711
Cpgi20531 8 71464189 to 71465588 1399 CpG island CpG island 20531
Tssr77856 8 71464910 to 71465000 90 + TSS region transcription start site region 77856
Mrpl34 8 71464959 to 71465747 788 + protein coding gene mitochondrial ribosomal protein L34
4930412O06Rik 8 71467110 to 71467967 857 unclassified gene RIKEN cDNA 4930412O06 gene
Cpgi20532 8 71468856 to 71469914 1058 CpG island CpG island 20532
Tssr77857 8 71469186 to 71469222 36 + TSS region transcription start site region 77857
Dda1 8 71469199 to 71476098 6899 + protein coding gene DET1 and DDB1 associated 1
Tssr77858 8 71469226 to 71469258 32 + TSS region transcription start site region 77858
Tssr77859 8 71470405 to 71470420 15 + TSS region transcription start site region 77859
Tssr77860 8 71474811 to 71474836 25 + TSS region transcription start site region 77860
Cpgi20533 8 71475791 to 71477254 1463 CpG island CpG island 20533
Ano8 8 71476019 to 71485963 9944 - protein coding gene anoctamin 8
Cpgi20534 8 71480349 to 71481834 1485 CpG island CpG island 20534
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5