Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71200680-71420710

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
Gm38415 8 71166044 to 71206948 40904 - lncRNA gene predicted gene, 38415
Gm29701 8 71214298 to 71216456 2158 - pseudogene predicted gene, 29701
Aprt-ps 8 71223949 to 71224453 504 + pseudogene adenine phosphoribosyl transferase, pseudogene
Tssr77837 8 71227132 to 71227134 2 + TSS region transcription start site region 77837
Haus8 8 71251124 to 71272590 21466 - protein coding gene 4HAUS augmin-like complex, subunit 8
Cpgi20520 8 71272087 to 71273376 1289 CpG island CpG island 20520
Tssr81693 8 71272313 to 71272321 8 - TSS region transcription start site region 81693
Tssr81694 8 71272338 to 71272351 13 - TSS region transcription start site region 81694
Tssr81695 8 71272367 to 71272382 15 - TSS region transcription start site region 81695
Tssr81696 8 71272419 to 71272435 16 - TSS region transcription start site region 81696
Tssr81697 8 71272448 to 71272478 30 - TSS region transcription start site region 81697
Tssr81698 8 71272495 to 71272512 17 - TSS region transcription start site region 81698
Tssr77838 8 71272690 to 71272746 56 + TSS region transcription start site region 77838
Myo9b 8 71272714 to 71360713 87999 + protein coding gene myosin IXb
Tssr77839 8 71272749 to 71272784 35 + TSS region transcription start site region 77839
Tssr81699 8 71273136 to 71273159 23 - TSS region transcription start site region 81699
D8Ertd674e 8 71277819 to 71278025 206 DNA segment DNA segment, Chr 8, ERATO Doi 674, expressed
D8Mit31 8 71287817 to 71287993 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 31
Aevm1 8 71287817 to 71287993 176 QTL autoimmune extremity vasculitis in MRL mice 1
Tssr77840 8 71310680 to 71310710 30 + TSS region transcription start site region 77840
D8Mit233 8 71322450 to 71322762 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 233
Tssr77841 8 71330709 to 71330745 36 + TSS region transcription start site region 77841
Tssr77842 8 71337417 to 71337431 14 + TSS region transcription start site region 77842
Tssr77843 8 71346151 to 71346154 3 + TSS region transcription start site region 77843
Cpgi20521 8 71366824 to 71368094 1270 CpG island CpG island 20521
Use1 8 71366848 to 71369732 2884 + protein coding gene unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Tssr77844 8 71366870 to 71366946 76 + TSS region transcription start site region 77844
Tssr77845 8 71367210 to 71367238 28 + TSS region transcription start site region 77845
Tssr2602 8 71367430 to 71367443 13 - TSS region transcription start site region 2602
Tssr77846 8 71367496 to 71367540 44 + TSS region transcription start site region 77846
Tssr77847 8 71367553 to 71367632 79 + TSS region transcription start site region 77847
Tssr77848 8 71367636 to 71367647 11 + TSS region transcription start site region 77848
Cpgi20522 8 71371199 to 71372100 901 CpG island CpG island 20522
Tssr77849 8 71371283 to 71371359 76 + TSS region transcription start site region 77849
Ocel1 8 71371298 to 71373689 2391 + protein coding gene occludin/ELL domain containing 1
Tssr77850 8 71371633 to 71371644 11 + TSS region transcription start site region 77850
Tssr77851 8 71371775 to 71371822 47 + TSS region transcription start site region 77851
Tssr77852 8 71371825 to 71371832 7 + TSS region transcription start site region 77852
Nr2f6 8 71374118 to 71381952 7834 - protein coding gene nuclear receptor subfamily 2, group F, member 6
Cpgi20523 8 71375412 to 71376632 1220 CpG island CpG island 20523
Cpgi20524 8 71380281 to 71382889 2608 CpG island CpG island 20524
Tssr81700 8 71381445 to 71381482 37 - TSS region transcription start site region 81700
Tssr2603 8 71381617 to 71381692 75 - TSS region transcription start site region 2603
Tssr81701 8 71381693 to 71381714 21 - TSS region transcription start site region 81701
Tssr81702 8 71381907 to 71381977 70 - TSS region transcription start site region 81702
Tssr81703 8 71381993 to 71382004 11 - TSS region transcription start site region 81703
Tssr81704 8 71382068 to 71382079 11 - TSS region transcription start site region 81704
Ushbp1 8 71384272 to 71395802 11530 - protein coding gene USH1 protein network component harmonin binding protein 1
A730052K04Rik 8 71389121 to 71389672 551 unclassified gene RIKEN cDNA A730052K04 gene
Tssr81705 8 71395794 to 71395821 27 - TSS region transcription start site region 81705
Tssr81706 8 71395831 to 71395840 9 - TSS region transcription start site region 81706
2310041K03Rik 8 71396160 to 71396774 614 unclassified gene RIKEN cDNA 2310041K03 gene
Cpgi20525 8 71396767 to 71397149 382 CpG island CpG island 20525
Tssr77853 8 71396853 to 71396891 38 + TSS region transcription start site region 77853
Babam1 8 71396861 to 71404619 7758 + protein coding gene BRISC and BRCA1 A complex member 1
Tssr77854 8 71402782 to 71402800 18 + TSS region transcription start site region 77854
Gm39193 8 71405348 to 71405947 599 - lncRNA gene predicted gene, 39193
Cpgi20526 8 71405597 to 71407025 1428 CpG island CpG island 20526
Tssr81707 8 71405890 to 71405904 14 - TSS region transcription start site region 81707
Tssr77855 8 71406003 to 71406050 47 + TSS region transcription start site region 77855
Ankle1 8 71406010 to 71409904 3894 + protein coding gene ankyrin repeat and LEM domain containing 1
Gm39194 8 71411197 to 71415831 4634 + lncRNA gene predicted gene, 39194
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1