Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:71050680-71570710

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Gm35256 8 71026792 to 71126576 99784 + lincRNA gene predicted gene, 35256
Gm17576 8 71042295 to 71085766 43471 - lncRNA gene predicted gene, 17576
Vmn2r-ps90 8 71059326 to 71074910 15584 - pseudogene vomeronasal 2, receptor, pseudogene 90
Tssr81691 8 71085726 to 71085729 3 - TSS region transcription start site region 81691
Tssr81692 8 71085758 to 71085763 5 - TSS region transcription start site region 81692
Gm3643 8 71086005 to 71108291 22286 + unclassified gene predicted gene 3643
Gm7827 8 71091701 to 71171456 79755 + protein coding gene predicted gene 7827
Gm27628 8 71119342 to 71119448 106 + miRNA gene predicted gene, 27628
D8Mit27a 8 71136783 to 71136987 204 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27a
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
D8Mit72a 8 71136855 to 71137028 173 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72a
Gm38415 8 71166044 to 71206948 40904 - lncRNA gene predicted gene, 38415
Gm29701 8 71214298 to 71216456 2158 - pseudogene predicted gene, 29701
Aprt-ps 8 71223949 to 71224453 504 + pseudogene adenine phosphoribosyl transferase, pseudogene
Tssr77837 8 71227132 to 71227134 2 + TSS region transcription start site region 77837
Haus8 8 71251124 to 71272590 21466 - protein coding gene 4HAUS augmin-like complex, subunit 8
Cpgi20520 8 71272087 to 71273376 1289 CpG island CpG island 20520
Tssr81693 8 71272313 to 71272321 8 - TSS region transcription start site region 81693
Tssr81694 8 71272338 to 71272351 13 - TSS region transcription start site region 81694
Tssr81695 8 71272367 to 71272382 15 - TSS region transcription start site region 81695
Tssr81696 8 71272419 to 71272435 16 - TSS region transcription start site region 81696
Tssr81697 8 71272448 to 71272478 30 - TSS region transcription start site region 81697
Tssr81698 8 71272495 to 71272512 17 - TSS region transcription start site region 81698
Tssr77838 8 71272690 to 71272746 56 + TSS region transcription start site region 77838
Myo9b 8 71272714 to 71360713 87999 + protein coding gene myosin IXb
Tssr77839 8 71272749 to 71272784 35 + TSS region transcription start site region 77839
Tssr81699 8 71273136 to 71273159 23 - TSS region transcription start site region 81699
D8Ertd674e 8 71277819 to 71278025 206 DNA segment DNA segment, Chr 8, ERATO Doi 674, expressed
D8Mit31 8 71287817 to 71287993 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 31
Aevm1 8 71287817 to 71287993 176 QTL autoimmune extremity vasculitis in MRL mice 1
Tssr77840 8 71310680 to 71310710 30 + TSS region transcription start site region 77840
D8Mit233 8 71322450 to 71322762 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 233
Tssr77841 8 71330709 to 71330745 36 + TSS region transcription start site region 77841
Tssr77842 8 71337417 to 71337431 14 + TSS region transcription start site region 77842
Tssr77843 8 71346151 to 71346154 3 + TSS region transcription start site region 77843
Cpgi20521 8 71366824 to 71368094 1270 CpG island CpG island 20521
Use1 8 71366848 to 71369732 2884 + protein coding gene unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Tssr77844 8 71366870 to 71366946 76 + TSS region transcription start site region 77844
Tssr77845 8 71367210 to 71367238 28 + TSS region transcription start site region 77845
Tssr2602 8 71367430 to 71367443 13 - TSS region transcription start site region 2602
Tssr77846 8 71367496 to 71367540 44 + TSS region transcription start site region 77846
Tssr77847 8 71367553 to 71367632 79 + TSS region transcription start site region 77847
Tssr77848 8 71367636 to 71367647 11 + TSS region transcription start site region 77848
Cpgi20522 8 71371199 to 71372100 901 CpG island CpG island 20522
Tssr77849 8 71371283 to 71371359 76 + TSS region transcription start site region 77849
Ocel1 8 71371298 to 71373689 2391 + protein coding gene occludin/ELL domain containing 1
Tssr77850 8 71371633 to 71371644 11 + TSS region transcription start site region 77850
Tssr77851 8 71371775 to 71371822 47 + TSS region transcription start site region 77851
Tssr77852 8 71371825 to 71371832 7 + TSS region transcription start site region 77852
Nr2f6 8 71374118 to 71381952 7834 - protein coding gene nuclear receptor subfamily 2, group F, member 6
Cpgi20523 8 71375412 to 71376632 1220 CpG island CpG island 20523
Cpgi20524 8 71380281 to 71382889 2608 CpG island CpG island 20524
Tssr81700 8 71381445 to 71381482 37 - TSS region transcription start site region 81700
Tssr2603 8 71381617 to 71381692 75 - TSS region transcription start site region 2603
Tssr81701 8 71381693 to 71381714 21 - TSS region transcription start site region 81701
Tssr81702 8 71381907 to 71381977 70 - TSS region transcription start site region 81702
Tssr81703 8 71381993 to 71382004 11 - TSS region transcription start site region 81703
Tssr81704 8 71382068 to 71382079 11 - TSS region transcription start site region 81704
Ushbp1 8 71384272 to 71395802 11530 - protein coding gene USH1 protein network component harmonin binding protein 1
A730052K04Rik 8 71389121 to 71389672 551 unclassified gene RIKEN cDNA A730052K04 gene
Tssr81705 8 71395794 to 71395821 27 - TSS region transcription start site region 81705
Tssr81706 8 71395831 to 71395840 9 - TSS region transcription start site region 81706
2310041K03Rik 8 71396160 to 71396774 614 unclassified gene RIKEN cDNA 2310041K03 gene
Cpgi20525 8 71396767 to 71397149 382 CpG island CpG island 20525
Tssr77853 8 71396853 to 71396891 38 + TSS region transcription start site region 77853
Babam1 8 71396861 to 71404619 7758 + protein coding gene BRISC and BRCA1 A complex member 1
Tssr77854 8 71402782 to 71402800 18 + TSS region transcription start site region 77854
Gm39193 8 71405348 to 71405947 599 - lncRNA gene predicted gene, 39193
Cpgi20526 8 71405597 to 71407025 1428 CpG island CpG island 20526
Tssr81707 8 71405890 to 71405904 14 - TSS region transcription start site region 81707
Tssr77855 8 71406003 to 71406050 47 + TSS region transcription start site region 77855
Ankle1 8 71406010 to 71409904 3894 + protein coding gene ankyrin repeat and LEM domain containing 1
Gm39194 8 71411197 to 71415831 4634 + lncRNA gene predicted gene, 39194
Tel-rs2 8 71431473 to 71446272 14799 unclassified gene telomere, related sequence 2
Abhd8 8 71456705 to 71463655 6950 - protein coding gene abhydrolase domain containing 8
Cpgi20527 8 71456894 to 71457390 496 CpG island CpG island 20527
Cpgi20528 8 71457959 to 71458229 270 CpG island CpG island 20528
Cpgi20529 8 71461211 to 71462001 790 CpG island CpG island 20529
Cpgi20530 8 71463060 to 71463964 904 CpG island CpG island 20530
Tssr81708 8 71463556 to 71463572 16 - TSS region transcription start site region 81708
Tssr81709 8 71463576 to 71463593 17 - TSS region transcription start site region 81709
Tssr81710 8 71463600 to 71463680 80 - TSS region transcription start site region 81710
Tssr81711 8 71463716 to 71463727 11 - TSS region transcription start site region 81711
Cpgi20531 8 71464189 to 71465588 1399 CpG island CpG island 20531
Tssr77856 8 71464910 to 71465000 90 + TSS region transcription start site region 77856
Mrpl34 8 71464959 to 71465747 788 + protein coding gene mitochondrial ribosomal protein L34
4930412O06Rik 8 71467110 to 71467967 857 unclassified gene RIKEN cDNA 4930412O06 gene
Cpgi20532 8 71468856 to 71469914 1058 CpG island CpG island 20532
Tssr77857 8 71469186 to 71469222 36 + TSS region transcription start site region 77857
Dda1 8 71469199 to 71476098 6899 + protein coding gene DET1 and DDB1 associated 1
Tssr77858 8 71469226 to 71469258 32 + TSS region transcription start site region 77858
Tssr77859 8 71470405 to 71470420 15 + TSS region transcription start site region 77859
Tssr77860 8 71474811 to 71474836 25 + TSS region transcription start site region 77860
Cpgi20533 8 71475791 to 71477254 1463 CpG island CpG island 20533
Ano8 8 71476019 to 71485963 9944 - protein coding gene anoctamin 8
Cpgi20534 8 71480349 to 71481834 1485 CpG island CpG island 20534
Cpgi20535 8 71484238 to 71484967 729 CpG island CpG island 20535
Cpgi20536 8 71485307 to 71486094 787 CpG island CpG island 20536
Tssr81712 8 71485928 to 71485943 15 - TSS region transcription start site region 81712
Tssr81713 8 71485954 to 71485981 27 - TSS region transcription start site region 81713
Tssr81714 8 71485997 to 71486035 38 - TSS region transcription start site region 81714
Tssr81715 8 71486037 to 71486056 19 - TSS region transcription start site region 81715
Tssr81716 8 71486332 to 71486339 7 - TSS region transcription start site region 81716
Cpgi20537 8 71487687 to 71488175 488 CpG island CpG island 20537
Tssr77861 8 71487843 to 71487867 24 + TSS region transcription start site region 77861
Gtpbp3 8 71487863 to 71493400 5537 + protein coding gene GTP binding protein 3
Cpgi20538 8 71488377 to 71489560 1183 CpG island CpG island 20538
Tssr77862 8 71488715 to 71488743 28 + TSS region transcription start site region 77862
Tssr77863 8 71488764 to 71488771 7 + TSS region transcription start site region 77863
Plvap 8 71497765 to 71511752 13987 - protein coding gene plasmalemma vesicle associated protein
Tssr81717 8 71498158 to 71498170 12 - TSS region transcription start site region 81717
Tssr81718 8 71498239 to 71498259 20 - TSS region transcription start site region 81718
Gm46041 8 71502836 to 71505696 2860 - protein coding gene predicted gene, 46041
Tssr81719 8 71504428 to 71504436 8 - TSS region transcription start site region 81719
Cpgi20539 8 71507294 to 71508533 1239 CpG island CpG island 20539
Tssr81720 8 71507628 to 71507640 12 - TSS region transcription start site region 81720
Tssr81721 8 71507653 to 71507741 88 - TSS region transcription start site region 81721
Tssr81722 8 71507742 to 71507766 24 - TSS region transcription start site region 81722
Cpgi20540 8 71511305 to 71511876 571 CpG island CpG island 20540
Tssr81723 8 71511735 to 71511761 26 - TSS region transcription start site region 81723
Tssr81724 8 71511762 to 71511778 16 - TSS region transcription start site region 81724
Ccdc194 8 71520120 to 71525711 5591 - protein coding gene coiled-coil domain containing 194
Cpgi20541 8 71521695 to 71522076 381 CpG island CpG island 20541
Tssr77864 8 71523520 to 71523527 7 + TSS region transcription start site region 77864
Gm7850 8 71523574 to 71524285 711 + pseudogene predicted gene 7850
Cpgi20542 8 71525317 to 71525866 549 CpG island CpG island 20542
Tssr81725 8 71525701 to 71525713 12 - TSS region transcription start site region 81725
Tssr81726 8 71525719 to 71525730 11 - TSS region transcription start site region 81726
Bst2 8 71534259 to 71537437 3178 - protein coding gene bone marrow stromal cell antigen 2
Tssr77865 8 71534263 to 71534266 3 + TSS region transcription start site region 77865
Tssr81727 8 71534299 to 71534316 17 - TSS region transcription start site region 81727
Tssr81728 8 71535471 to 71535489 18 - TSS region transcription start site region 81728
Cpgi20543 8 71537053 to 71537506 453 CpG island CpG island 20543
Tssr81729 8 71537402 to 71537468 66 - TSS region transcription start site region 81729
Cpgi20544 8 71542625 to 71543584 959 CpG island CpG island 20544
Mvb12a 8 71542879 to 71548026 5147 + protein coding gene multivesicular body subunit 12A
Tssr77866 8 71542911 to 71542973 62 + TSS region transcription start site region 77866
Tssr77867 8 71543157 to 71543173 16 + TSS region transcription start site region 77867
Tssr77868 8 71543176 to 71543214 38 + TSS region transcription start site region 77868
Tmem221 8 71554238 to 71558871 4633 - protein coding gene transmembrane protein 221
Cpgi20545 8 71558089 to 71559466 1377 CpG island CpG island 20545
Tssr81730 8 71558906 to 71558919 13 - TSS region transcription start site region 81730
Tssr81731 8 71558970 to 71558983 13 - TSS region transcription start site region 81731
Tssr81732 8 71558990 to 71559011 21 - TSS region transcription start site region 81732
Tssr77869 8 71559177 to 71559191 14 + TSS region transcription start site region 77869
Nxnl1 8 71560555 to 71566601 6046 - protein coding gene nucleoredoxin-like 1
Cpgi20546 8 71561512 to 71561761 249 CpG island CpG island 20546
Cpgi20547 8 71562510 to 71563186 676 CpG island CpG island 20547
Tssr81733 8 71566604 to 71566612 8 - TSS region transcription start site region 81733
Tssr81734 8 71566615 to 71566626 11 - TSS region transcription start site region 81734
Tssr81735 8 71566627 to 71566632 5 - TSS region transcription start site region 81735
Tssr81736 8 71566633 to 71566640 7 - TSS region transcription start site region 81736
Tssr81737 8 71566641 to 71566652 11 - TSS region transcription start site region 81737
Tssr77870 8 71568866 to 71568931 65 + TSS region transcription start site region 77870
Slc27a1 8 71568882 to 71587302 18420 + protein coding gene solute carrier family 27 (fatty acid transporter), member 1
Tssr77871 8 71568957 to 71568983 26 + TSS region transcription start site region 77871
Cpgi20548 8 71569359 to 71570112 753 CpG island CpG island 20548
Tssr81738 8 71569463 to 71569472 9 - TSS region transcription start site region 81738
Tssr77872 8 71569657 to 71569689 32 + TSS region transcription start site region 77872
Cpgi20549 8 71570261 to 71571081 820 CpG island CpG island 20549
Tssr77873 8 71570581 to 71570601 20 + TSS region transcription start site region 77873
Tssr77874 8 71570617 to 71570631 14 + TSS region transcription start site region 77874
Tssr77875 8 71570667 to 71570725 58 + TSS region transcription start site region 77875
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1