Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70831588-71221630

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae36 8 14723160 to 71045600 56322440 QTL experimental allergic encephalomyelitis susceptibility 36
Arrdc2 8 70835129 to 70839720 4591 - protein coding gene arrestin domain containing 2
Cpgi20508 8 70838668 to 70840138 1470 CpG island CpG island 20508
Tssr81680 8 70839526 to 70839542 16 - TSS region transcription start site region 81680
Tssr81681 8 70839651 to 70839666 15 - TSS region transcription start site region 81681
Tssr77833 8 70841272 to 70841302 30 + TSS region transcription start site region 77833
Kcnn1 8 70842049 to 70863258 21209 - protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
Cpgi20509 8 70842510 to 70842768 258 CpG island CpG island 20509
Cpgi20510 8 70856494 to 70857088 594 CpG island CpG island 20510
Cpgi20511 8 70862670 to 70864561 1891 CpG island CpG island 20511
A230052G05Rik 8 70863127 to 70865428 2301 + unclassified gene RIKEN cDNA A230052G05 gene
Tssr81682 8 70863749 to 70863765 16 - TSS region transcription start site region 81682
Cpgi20512 8 70864568 to 70865964 1396 CpG island CpG island 20512
Ccdc124 8 70868226 to 70873490 5264 - protein coding gene coiled-coil domain containing 124
Cpgi20513 8 70868424 to 70869228 804 CpG island CpG island 20513
Cpgi20514 8 70869797 to 70870066 269 CpG island CpG island 20514
Cpgi20515 8 70872940 to 70873887 947 CpG island CpG island 20515
Tssr81683 8 70873231 to 70873238 7 - TSS region transcription start site region 81683
Tssr81684 8 70873477 to 70873501 24 - TSS region transcription start site region 81684
Slc5a5 8 70882889 to 70892757 9868 - protein coding gene solute carrier family 5 (sodium iodide symporter), member 5
Cpgi20516 8 70887757 to 70887987 230 CpG island CpG island 20516
Tssr81685 8 70887834 to 70887894 60 - TSS region transcription start site region 81685
Cpgi20517 8 70891249 to 70893267 2018 CpG island CpG island 20517
Tssr81686 8 70892752 to 70892758 6 - TSS region transcription start site region 81686
Rpl18a 8 70894722 to 70897412 2690 - protein coding gene ribosomal protein L18A
Mir7067 8 70895508 to 70895570 62 - miRNA gene microRNA 7067
Tssr81687 8 70895713 to 70895719 6 - TSS region transcription start site region 81687
Snora68 8 70895759 to 70895856 97 - snoRNA gene small nucleolar RNA, H/ACA box 68
Tssr81688 8 70895883 to 70895889 6 - TSS region transcription start site region 81688
Cpgi20518 8 70896703 to 70897872 1169 CpG island CpG island 20518
Tssr81689 8 70897407 to 70897423 16 - TSS region transcription start site region 81689
Tssr81690 8 70897437 to 70897448 11 - TSS region transcription start site region 81690
Tssr77834 8 70897625 to 70897670 45 + TSS region transcription start site region 77834
Cpgi20519 8 70905470 to 70906802 1332 CpG island CpG island 20519
Tssr77835 8 70905970 to 70906017 47 + TSS region transcription start site region 77835
Map1s 8 70905974 to 70917529 11555 + protein coding gene microtubule-associated protein 1S
Mir1969 8 70925525 to 70925618 93 + miRNA gene microRNA 1969
Gm10654 8 70931405 to 70933037 1632 + protein coding gene predicted gene 10654
1700026F02Rik 8 71006728 to 71026755 20027 - lincRNA gene RIKEN cDNA 1700026F02 gene
D8Mit179.1 8 71012779 to 71012889 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.1
D8Mit179 8 71012950 to 71013088 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179
D8Mit179.2 8 71013003 to 71013112 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.2
Tssr77836 8 71026588 to 71026630 42 + TSS region transcription start site region 77836
Gm35256 8 71026792 to 71126576 99784 + lincRNA gene predicted gene, 35256
Gm18209 8 71040837 to 71041758 921 - pseudogene predicted gene, 18209
Gm17576 8 71042295 to 71085766 43471 - lncRNA gene predicted gene, 17576
D8Mit178 8 71045453 to 71045600 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 178
Vmn2r-ps90 8 71059326 to 71074910 15584 - pseudogene vomeronasal 2, receptor, pseudogene 90
Tssr81691 8 71085726 to 71085729 3 - TSS region transcription start site region 81691
Tssr81692 8 71085758 to 71085763 5 - TSS region transcription start site region 81692
Gm3643 8 71086005 to 71108291 22286 + unclassified gene predicted gene 3643
Gm7827 8 71091701 to 71171456 79755 + protein coding gene predicted gene 7827
Gm27628 8 71119342 to 71119448 106 + miRNA gene predicted gene, 27628
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
D8Mit27a 8 71136783 to 71136987 204 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27a
D8Mit72a 8 71136855 to 71137028 173 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72a
Gm38415 8 71166044 to 71206948 40904 - lncRNA gene predicted gene, 38415
Gm29701 8 71214298 to 71216456 2158 - pseudogene predicted gene, 29701