Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70801855-71472028

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae36 8 14723160 to 71045600 56322440 QTL experimental allergic encephalomyelitis susceptibility 36
W10q14 8 32016544 to 71287993 39271449 QTL weight 10 weeks QTL 14
Egq12 8 32016544 to 71287993 39271449 QTL early growth QTL 12
Orq3 8 32016544 to 71287993 39271449 QTL ovulation rate QTL 3
W6q9 8 32016544 to 71287993 39271449 QTL weight 6 weeks QTL 9
Mast3 8 70778117 to 70805054 26937 - protein coding gene microtubule associated serine/threonine kinase 3
Cpgi20504 8 70803880 to 70805250 1370 CpG island CpG island 20504
Tssr81678 8 70804979 to 70804999 20 - TSS region transcription start site region 81678
Tssr81679 8 70805001 to 70805010 9 - TSS region transcription start site region 81679
Tssr77831 8 70808378 to 70808400 22 + TSS region transcription start site region 77831
Tssr77832 8 70808431 to 70808474 43 + TSS region transcription start site region 77832
Il12rb1 8 70808449 to 70821424 12975 + protein coding gene interleukin 12 receptor, beta 1
Cpgi20505 8 70816674 to 70817340 666 CpG island CpG island 20505
Cpgi20506 8 70820485 to 70820761 276 CpG island CpG island 20506
Cpgi20507 8 70821446 to 70821977 531 CpG island CpG island 20507
Arrdc2 8 70835129 to 70839720 4591 - protein coding gene arrestin domain containing 2
Cpgi20508 8 70838668 to 70840138 1470 CpG island CpG island 20508
Tssr81680 8 70839526 to 70839542 16 - TSS region transcription start site region 81680
Tssr81681 8 70839651 to 70839666 15 - TSS region transcription start site region 81681
Tssr77833 8 70841272 to 70841302 30 + TSS region transcription start site region 77833
Kcnn1 8 70842049 to 70863258 21209 - protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
Cpgi20509 8 70842510 to 70842768 258 CpG island CpG island 20509
Cpgi20510 8 70856494 to 70857088 594 CpG island CpG island 20510
Cpgi20511 8 70862670 to 70864561 1891 CpG island CpG island 20511
A230052G05Rik 8 70863127 to 70865428 2301 + unclassified gene RIKEN cDNA A230052G05 gene
Tssr81682 8 70863749 to 70863765 16 - TSS region transcription start site region 81682
Cpgi20512 8 70864568 to 70865964 1396 CpG island CpG island 20512
Ccdc124 8 70868226 to 70873490 5264 - protein coding gene coiled-coil domain containing 124
Cpgi20513 8 70868424 to 70869228 804 CpG island CpG island 20513
Cpgi20514 8 70869797 to 70870066 269 CpG island CpG island 20514
Cpgi20515 8 70872940 to 70873887 947 CpG island CpG island 20515
Tssr81683 8 70873231 to 70873238 7 - TSS region transcription start site region 81683
Tssr81684 8 70873477 to 70873501 24 - TSS region transcription start site region 81684
Slc5a5 8 70882889 to 70892757 9868 - protein coding gene solute carrier family 5 (sodium iodide symporter), member 5
Cpgi20516 8 70887757 to 70887987 230 CpG island CpG island 20516
Tssr81685 8 70887834 to 70887894 60 - TSS region transcription start site region 81685
Cpgi20517 8 70891249 to 70893267 2018 CpG island CpG island 20517
Tssr81686 8 70892752 to 70892758 6 - TSS region transcription start site region 81686
Rpl18a 8 70894722 to 70897412 2690 - protein coding gene ribosomal protein L18A
Mir7067 8 70895508 to 70895570 62 - miRNA gene microRNA 7067
Tssr81687 8 70895713 to 70895719 6 - TSS region transcription start site region 81687
Snora68 8 70895759 to 70895856 97 - snoRNA gene small nucleolar RNA, H/ACA box 68
Tssr81688 8 70895883 to 70895889 6 - TSS region transcription start site region 81688
Cpgi20518 8 70896703 to 70897872 1169 CpG island CpG island 20518
Tssr81689 8 70897407 to 70897423 16 - TSS region transcription start site region 81689
Tssr81690 8 70897437 to 70897448 11 - TSS region transcription start site region 81690
Tssr77834 8 70897625 to 70897670 45 + TSS region transcription start site region 77834
Cpgi20519 8 70905470 to 70906802 1332 CpG island CpG island 20519
Tssr77835 8 70905970 to 70906017 47 + TSS region transcription start site region 77835
Map1s 8 70905974 to 70917529 11555 + protein coding gene microtubule-associated protein 1S
Mir1969 8 70925525 to 70925618 93 + miRNA gene microRNA 1969
Gm10654 8 70931405 to 70933037 1632 + protein coding gene predicted gene 10654
1700026F02Rik 8 71006728 to 71026755 20027 - lincRNA gene RIKEN cDNA 1700026F02 gene
D8Mit179.1 8 71012779 to 71012889 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.1
D8Mit179 8 71012950 to 71013088 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179
D8Mit179.2 8 71013003 to 71013112 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.2
Tssr77836 8 71026588 to 71026630 42 + TSS region transcription start site region 77836
Gm35256 8 71026792 to 71126576 99784 + lincRNA gene predicted gene, 35256
Gm18209 8 71040837 to 71041758 921 - pseudogene predicted gene, 18209
Gm17576 8 71042295 to 71085766 43471 - lncRNA gene predicted gene, 17576
D8Mit178 8 71045453 to 71045600 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 178
Vmn2r-ps90 8 71059326 to 71074910 15584 - pseudogene vomeronasal 2, receptor, pseudogene 90
Tssr81691 8 71085726 to 71085729 3 - TSS region transcription start site region 81691
Tssr81692 8 71085758 to 71085763 5 - TSS region transcription start site region 81692
Gm3643 8 71086005 to 71108291 22286 + unclassified gene predicted gene 3643
Gm7827 8 71091701 to 71171456 79755 + protein coding gene predicted gene 7827
Gm27628 8 71119342 to 71119448 106 + miRNA gene predicted gene, 27628
D8Mit27a 8 71136783 to 71136987 204 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 27a
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
D8Mit72a 8 71136855 to 71137028 173 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 72a
Gm38415 8 71166044 to 71206948 40904 - lncRNA gene predicted gene, 38415
Gm29701 8 71214298 to 71216456 2158 - pseudogene predicted gene, 29701
Aprt-ps 8 71223949 to 71224453 504 + pseudogene adenine phosphoribosyl transferase, pseudogene
Tssr77837 8 71227132 to 71227134 2 + TSS region transcription start site region 77837
Haus8 8 71251124 to 71272590 21466 - protein coding gene 4HAUS augmin-like complex, subunit 8
Cpgi20520 8 71272087 to 71273376 1289 CpG island CpG island 20520
Tssr81693 8 71272313 to 71272321 8 - TSS region transcription start site region 81693
Tssr81694 8 71272338 to 71272351 13 - TSS region transcription start site region 81694
Tssr81695 8 71272367 to 71272382 15 - TSS region transcription start site region 81695
Tssr81696 8 71272419 to 71272435 16 - TSS region transcription start site region 81696
Tssr81697 8 71272448 to 71272478 30 - TSS region transcription start site region 81697
Tssr81698 8 71272495 to 71272512 17 - TSS region transcription start site region 81698
Tssr77838 8 71272690 to 71272746 56 + TSS region transcription start site region 77838
Myo9b 8 71272714 to 71360713 87999 + protein coding gene myosin IXb
Tssr77839 8 71272749 to 71272784 35 + TSS region transcription start site region 77839
Tssr81699 8 71273136 to 71273159 23 - TSS region transcription start site region 81699
D8Ertd674e 8 71277819 to 71278025 206 DNA segment DNA segment, Chr 8, ERATO Doi 674, expressed
Aevm1 8 71287817 to 71287993 176 QTL autoimmune extremity vasculitis in MRL mice 1
D8Mit31 8 71287817 to 71287993 176 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 31
Tssr77840 8 71310680 to 71310710 30 + TSS region transcription start site region 77840
D8Mit233 8 71322450 to 71322762 312 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 233
Tssr77841 8 71330709 to 71330745 36 + TSS region transcription start site region 77841
Tssr77842 8 71337417 to 71337431 14 + TSS region transcription start site region 77842
Tssr77843 8 71346151 to 71346154 3 + TSS region transcription start site region 77843
Cpgi20521 8 71366824 to 71368094 1270 CpG island CpG island 20521
Use1 8 71366848 to 71369732 2884 + protein coding gene unconventional SNARE in the ER 1 homolog (S. cerevisiae)
Tssr77844 8 71366870 to 71366946 76 + TSS region transcription start site region 77844
Tssr77845 8 71367210 to 71367238 28 + TSS region transcription start site region 77845
Tssr2602 8 71367430 to 71367443 13 - TSS region transcription start site region 2602
Tssr77846 8 71367496 to 71367540 44 + TSS region transcription start site region 77846
Tssr77847 8 71367553 to 71367632 79 + TSS region transcription start site region 77847
Tssr77848 8 71367636 to 71367647 11 + TSS region transcription start site region 77848
Cpgi20522 8 71371199 to 71372100 901 CpG island CpG island 20522
Tssr77849 8 71371283 to 71371359 76 + TSS region transcription start site region 77849
Ocel1 8 71371298 to 71373689 2391 + protein coding gene occludin/ELL domain containing 1
Tssr77850 8 71371633 to 71371644 11 + TSS region transcription start site region 77850
Tssr77851 8 71371775 to 71371822 47 + TSS region transcription start site region 77851
Tssr77852 8 71371825 to 71371832 7 + TSS region transcription start site region 77852
Nr2f6 8 71374118 to 71381952 7834 - protein coding gene nuclear receptor subfamily 2, group F, member 6
Cpgi20523 8 71375412 to 71376632 1220 CpG island CpG island 20523
Cpgi20524 8 71380281 to 71382889 2608 CpG island CpG island 20524
Tssr81700 8 71381445 to 71381482 37 - TSS region transcription start site region 81700
Tssr2603 8 71381617 to 71381692 75 - TSS region transcription start site region 2603
Tssr81701 8 71381693 to 71381714 21 - TSS region transcription start site region 81701
Tssr81702 8 71381907 to 71381977 70 - TSS region transcription start site region 81702
Tssr81703 8 71381993 to 71382004 11 - TSS region transcription start site region 81703
Tssr81704 8 71382068 to 71382079 11 - TSS region transcription start site region 81704
Ushbp1 8 71384272 to 71395802 11530 - protein coding gene USH1 protein network component harmonin binding protein 1
A730052K04Rik 8 71389121 to 71389672 551 unclassified gene RIKEN cDNA A730052K04 gene
Tssr81705 8 71395794 to 71395821 27 - TSS region transcription start site region 81705
Tssr81706 8 71395831 to 71395840 9 - TSS region transcription start site region 81706
2310041K03Rik 8 71396160 to 71396774 614 unclassified gene RIKEN cDNA 2310041K03 gene
Cpgi20525 8 71396767 to 71397149 382 CpG island CpG island 20525
Tssr77853 8 71396853 to 71396891 38 + TSS region transcription start site region 77853
Babam1 8 71396861 to 71404619 7758 + protein coding gene BRISC and BRCA1 A complex member 1
Tssr77854 8 71402782 to 71402800 18 + TSS region transcription start site region 77854
Gm39193 8 71405348 to 71405947 599 - lncRNA gene predicted gene, 39193
Cpgi20526 8 71405597 to 71407025 1428 CpG island CpG island 20526
Tssr81707 8 71405890 to 71405904 14 - TSS region transcription start site region 81707
Tssr77855 8 71406003 to 71406050 47 + TSS region transcription start site region 77855
Ankle1 8 71406010 to 71409904 3894 + protein coding gene ankyrin repeat and LEM domain containing 1
Gm39194 8 71411197 to 71415831 4634 + lncRNA gene predicted gene, 39194
Tel-rs2 8 71431473 to 71446272 14799 unclassified gene telomere, related sequence 2
Abhd8 8 71456705 to 71463655 6950 - protein coding gene abhydrolase domain containing 8
Cpgi20527 8 71456894 to 71457390 496 CpG island CpG island 20527
Cpgi20528 8 71457959 to 71458229 270 CpG island CpG island 20528
Cpgi20529 8 71461211 to 71462001 790 CpG island CpG island 20529
Cpgi20530 8 71463060 to 71463964 904 CpG island CpG island 20530
Tssr81708 8 71463556 to 71463572 16 - TSS region transcription start site region 81708
Tssr81709 8 71463576 to 71463593 17 - TSS region transcription start site region 81709
Tssr81710 8 71463600 to 71463680 80 - TSS region transcription start site region 81710
Tssr81711 8 71463716 to 71463727 11 - TSS region transcription start site region 81711
Cpgi20531 8 71464189 to 71465588 1399 CpG island CpG island 20531
Tssr77856 8 71464910 to 71465000 90 + TSS region transcription start site region 77856
Mrpl34 8 71464959 to 71465747 788 + protein coding gene mitochondrial ribosomal protein L34
4930412O06Rik 8 71467110 to 71467967 857 unclassified gene RIKEN cDNA 4930412O06 gene
Cpgi20532 8 71468856 to 71469914 1058 CpG island CpG island 20532
Tssr77857 8 71469186 to 71469222 36 + TSS region transcription start site region 77857
Dda1 8 71469199 to 71476098 6899 + protein coding gene DET1 and DDB1 associated 1
Tssr77858 8 71469226 to 71469258 32 + TSS region transcription start site region 77858
Tssr77859 8 71470405 to 71470420 15 + TSS region transcription start site region 77859
W3q5 8 123895615 to 71287817 -52607798 QTL weight 3 weeks QTL 5
Orq1 8 123895615 to 71287817 -52607798 QTL ovulation rate QTL 1