Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70143849-70324983

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Borcs8 8 70139499 to 70147319 7820 + protein coding gene BLOC-1 related complex subunit 8
Gm45929 8 70139499 to 70167488 27989 + protein coding gene predicted gene, 45929
Tssr77713 8 70148677 to 70148682 5 + TSS region transcription start site region 77713
Tssr77714 8 70152754 to 70152769 15 + TSS region transcription start site region 77714
Mef2b 8 70152761 to 70167488 14727 + protein coding gene myocyte enhancer factor 2B
Cpgi20441 8 70158394 to 70158894 500 CpG island CpG island 20441
Tssr77715 8 70158751 to 70158768 17 + TSS region transcription start site region 77715
Cpgi20442 8 70166010 to 70166227 217 CpG island CpG island 20442
Cpgi20443 8 70166646 to 70167169 523 CpG island CpG island 20443
Cpgi20444 8 70172130 to 70172604 474 CpG island CpG island 20444
Tmem161a 8 70172356 to 70183681 11325 + protein coding gene transmembrane protein 161A
Tssr77716 8 70172383 to 70172424 41 + TSS region transcription start site region 77716
Slc25a42 8 70184340 to 70212281 27941 - protein coding gene solute carrier family 25, member 42
Tssr81598 8 70188858 to 70188886 28 - TSS region transcription start site region 81598
Cpgi20445 8 70211661 to 70212996 1335 CpG island CpG island 20445
Tssr81599 8 70212251 to 70212265 14 - TSS region transcription start site region 81599
Tssr81600 8 70212268 to 70212300 32 - TSS region transcription start site region 81600
Armc6 8 70220172 to 70234422 14250 - protein coding gene armadillo repeat containing 6
Cpgi20446 8 70233849 to 70234983 1134 CpG island CpG island 20446
Tssr81601 8 70234097 to 70234160 63 - TSS region transcription start site region 81601
Tssr77717 8 70234187 to 70234228 41 + TSS region transcription start site region 77717
Sugp2 8 70234209 to 70263105 28896 + protein coding gene SURP and G patch domain containing 2
Tssr81602 8 70234401 to 70234459 58 - TSS region transcription start site region 81602
Tssr77718 8 70234532 to 70234608 76 + TSS region transcription start site region 77718
Tssr77719 8 70234613 to 70234628 15 + TSS region transcription start site region 77719
Tssr77720 8 70234641 to 70234655 14 + TSS region transcription start site region 77720
Tssr77721 8 70248055 to 70248072 17 + TSS region transcription start site region 77721
Tssr77722 8 70270244 to 70270262 18 + TSS region transcription start site region 77722
Gm38427 8 70272349 to 70279916 7567 + unclassified gene predicted gene, 38427
Tssr77723 8 70274738 to 70274751 13 + TSS region transcription start site region 77723
Tssr2595 8 70278073 to 70278086 13 + TSS region transcription start site region 2595
Tssr77724 8 70278101 to 70278113 12 + TSS region transcription start site region 77724
Cpgi20447 8 70278336 to 70278518 182 CpG island CpG island 20447
Cpgi20448 8 70282471 to 70283908 1437 CpG island CpG island 20448
Homer3 8 70282891 to 70294361 11470 + protein coding gene homer scaffolding protein 3
Tssr77725 8 70282978 to 70283044 66 + TSS region transcription start site region 77725
Tssr77726 8 70283055 to 70283080 25 + TSS region transcription start site region 77726
Ddx49 8 70292866 to 70302489 9623 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
Cpgi20449 8 70302004 to 70303037 1033 CpG island CpG island 20449
Tssr81603 8 70302446 to 70302478 32 - TSS region transcription start site region 81603
Tssr81604 8 70302487 to 70302488 1 - TSS region transcription start site region 81604
Tssr77727 8 70302543 to 70302630 87 + TSS region transcription start site region 77727
Tssr77728 8 70302754 to 70302760 6 + TSS region transcription start site region 77728
Tssr77729 8 70302761 to 70302804 43 + TSS region transcription start site region 77729
Cope 8 70302785 to 70312990 10205 + protein coding gene coatomer protein complex, subunit epsilon
Tssr81605 8 70302879 to 70302892 13 - TSS region transcription start site region 81605
Tssr81606 8 70302894 to 70302934 40 - TSS region transcription start site region 81606
Tssr81607 8 70303123 to 70303127 4 - TSS region transcription start site region 81607
Tssr2596 8 70310377 to 70310397 20 + TSS region transcription start site region 2596
Cpgi20450 8 70315406 to 70316594 1188 CpG island CpG island 20450
Tssr77730 8 70315759 to 70315835 76 + TSS region transcription start site region 77730
Cers1 8 70315775 to 70331588 15813 + protein coding gene ceramide synthase 1
Tssr77731 8 70315836 to 70315846 10 + TSS region transcription start site region 77731
Tssr81608 8 70316203 to 70316217 14 - TSS region transcription start site region 81608