Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70083858-70293886

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20433 8 70083084 to 70083935 851 CpG island CpG island 20433
Hapln4 8 70083529 to 70090862 7333 + protein coding gene hyaluronan and proteoglycan link protein 4
Cpgi20434 8 70083959 to 70085225 1266 CpG island CpG island 20434
Cpgi20435 8 70086676 to 70087441 765 CpG island CpG island 20435
Cpgi20436 8 70087936 to 70088593 657 CpG island CpG island 20436
Tssr77706 8 70089431 to 70089456 25 + TSS region transcription start site region 77706
Ncan 8 70093085 to 70120866 27781 - protein coding gene neurocan
Tssr81579 8 70093580 to 70093602 22 - TSS region transcription start site region 81579
Tssr81580 8 70095147 to 70095158 11 - TSS region transcription start site region 81580
Tssr81581 8 70095173 to 70095206 33 - TSS region transcription start site region 81581
Tssr81582 8 70095239 to 70095258 19 - TSS region transcription start site region 81582
Tssr81583 8 70095278 to 70095296 18 - TSS region transcription start site region 81583
Tssr81584 8 70095534 to 70095550 16 - TSS region transcription start site region 81584
Tssr81585 8 70095689 to 70095700 11 - TSS region transcription start site region 81585
Tssr81586 8 70095803 to 70095814 11 - TSS region transcription start site region 81586
Tssr81587 8 70096067 to 70096078 11 - TSS region transcription start site region 81587
Mir7066 8 70102524 to 70102586 62 - miRNA gene microRNA 7066
Tssr81588 8 70108446 to 70108458 12 - TSS region transcription start site region 81588
Tssr81589 8 70108506 to 70108530 24 - TSS region transcription start site region 81589
Tssr81590 8 70110209 to 70110220 11 - TSS region transcription start site region 81590
Tssr81591 8 70110233 to 70110244 11 - TSS region transcription start site region 81591
Cpgi20437 8 70111324 to 70113029 1705 CpG island CpG island 20437
Cpgi20438 8 70120669 to 70120994 325 CpG island CpG island 20438
Tssr81592 8 70120816 to 70120832 16 - TSS region transcription start site region 81592
Gm25906 8 70123028 to 70123153 125 - snoRNA gene predicted gene, 25906
Rfxank 8 70130794 to 70139154 8360 - protein coding gene regulatory factor X-associated ankyrin-containing protein
Cpgi20439 8 70131099 to 70131634 535 CpG island CpG island 20439
Tssr77707 8 70131322 to 70131326 4 + TSS region transcription start site region 77707
Tssr77708 8 70131327 to 70131392 65 + TSS region transcription start site region 77708
Nr2c2ap 8 70131333 to 70133749 2416 + protein coding gene nuclear receptor 2C2-associated protein
Cpgi20440 8 70139017 to 70139941 924 CpG island CpG island 20440
Tssr81593 8 70139055 to 70139062 7 - TSS region transcription start site region 81593
Tssr81594 8 70139067 to 70139092 25 - TSS region transcription start site region 81594
Tssr81595 8 70139100 to 70139132 32 - TSS region transcription start site region 81595
Tssr81596 8 70139150 to 70139162 12 - TSS region transcription start site region 81596
Tssr81597 8 70139199 to 70139261 62 - TSS region transcription start site region 81597
Tssr77709 8 70139347 to 70139364 17 + TSS region transcription start site region 77709
Tssr77710 8 70139448 to 70139499 51 + TSS region transcription start site region 77710
Borcs8 8 70139499 to 70147319 7820 + protein coding gene BLOC-1 related complex subunit 8
Gm45929 8 70139499 to 70167488 27989 + protein coding gene predicted gene, 45929
Tssr77711 8 70139687 to 70139734 47 + TSS region transcription start site region 77711
Tssr77712 8 70141620 to 70141629 9 + TSS region transcription start site region 77712
Tssr77713 8 70148677 to 70148682 5 + TSS region transcription start site region 77713
Tssr77714 8 70152754 to 70152769 15 + TSS region transcription start site region 77714
Mef2b 8 70152761 to 70167488 14727 + protein coding gene myocyte enhancer factor 2B
Cpgi20441 8 70158394 to 70158894 500 CpG island CpG island 20441
Tssr77715 8 70158751 to 70158768 17 + TSS region transcription start site region 77715
Cpgi20442 8 70166010 to 70166227 217 CpG island CpG island 20442
Cpgi20443 8 70166646 to 70167169 523 CpG island CpG island 20443
Cpgi20444 8 70172130 to 70172604 474 CpG island CpG island 20444
Tmem161a 8 70172356 to 70183681 11325 + protein coding gene transmembrane protein 161A
Tssr77716 8 70172383 to 70172424 41 + TSS region transcription start site region 77716
Slc25a42 8 70184340 to 70212281 27941 - protein coding gene solute carrier family 25, member 42
Tssr81598 8 70188858 to 70188886 28 - TSS region transcription start site region 81598
Cpgi20445 8 70211661 to 70212996 1335 CpG island CpG island 20445
Tssr81599 8 70212251 to 70212265 14 - TSS region transcription start site region 81599
Tssr81600 8 70212268 to 70212300 32 - TSS region transcription start site region 81600
Armc6 8 70220172 to 70234422 14250 - protein coding gene armadillo repeat containing 6
Cpgi20446 8 70233849 to 70234983 1134 CpG island CpG island 20446
Tssr81601 8 70234097 to 70234160 63 - TSS region transcription start site region 81601
Tssr77717 8 70234187 to 70234228 41 + TSS region transcription start site region 77717
Sugp2 8 70234209 to 70263105 28896 + protein coding gene SURP and G patch domain containing 2
Tssr81602 8 70234401 to 70234459 58 - TSS region transcription start site region 81602
Tssr77718 8 70234532 to 70234608 76 + TSS region transcription start site region 77718
Tssr77719 8 70234613 to 70234628 15 + TSS region transcription start site region 77719
Tssr77720 8 70234641 to 70234655 14 + TSS region transcription start site region 77720
Tssr77721 8 70248055 to 70248072 17 + TSS region transcription start site region 77721
Tssr77722 8 70270244 to 70270262 18 + TSS region transcription start site region 77722
Gm38427 8 70272349 to 70279916 7567 + unclassified gene predicted gene, 38427
Tssr77723 8 70274738 to 70274751 13 + TSS region transcription start site region 77723
Tssr2595 8 70278073 to 70278086 13 + TSS region transcription start site region 2595
Tssr77724 8 70278101 to 70278113 12 + TSS region transcription start site region 77724
Cpgi20447 8 70278336 to 70278518 182 CpG island CpG island 20447
Cpgi20448 8 70282471 to 70283908 1437 CpG island CpG island 20448
Homer3 8 70282891 to 70294361 11470 + protein coding gene homer scaffolding protein 3
Tssr77725 8 70282978 to 70283044 66 + TSS region transcription start site region 77725
Tssr77726 8 70283055 to 70283080 25 + TSS region transcription start site region 77726
Ddx49 8 70292866 to 70302489 9623 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 49