Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:69873028-70373153

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183 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cilp2 8 69880366 to 69887392 7026 - protein coding gene cartilage intermediate layer protein 2
Cpgi20423 8 69880727 to 69883505 2778 CpG island CpG island 20423
Tssr81538 8 69882162 to 69882176 14 - TSS region transcription start site region 81538
Gm33746 8 69882980 to 69888384 5404 + lncRNA gene predicted gene, 33746
Cpgi20424 8 69885368 to 69885558 190 CpG island CpG island 20424
Cpgi20425 8 69885811 to 69886738 927 CpG island CpG island 20425
Cpgi20426 8 69887098 to 69888327 1229 CpG island CpG island 20426
Tssr81539 8 69887381 to 69887401 20 - TSS region transcription start site region 81539
Yjefn3 8 69887788 to 69902712 14924 - protein coding gene YjeF N-terminal domain containing 3
Tssr81540 8 69888201 to 69888215 14 - TSS region transcription start site region 81540
Tssr81541 8 69888230 to 69888237 7 - TSS region transcription start site region 81541
Cpgi20427 8 69888601 to 69889700 1099 CpG island CpG island 20427
Tssr81542 8 69893979 to 69893984 5 - TSS region transcription start site region 81542
Ndufa13 8 69894180 to 69902558 8378 - protein coding gene NADH:ubiquinone oxidoreductase subunit A13
Tssr81543 8 69901134 to 69901135 1 - TSS region transcription start site region 81543
Cpgi20428 8 69901395 to 69903591 2196 CpG island CpG island 20428
Tssr81544 8 69901632 to 69901657 25 - TSS region transcription start site region 81544
Tssr81545 8 69901661 to 69901672 11 - TSS region transcription start site region 81545
Tssr2594 8 69901768 to 69901796 28 + TSS region transcription start site region 2594
Tssr81546 8 69901985 to 69902007 22 - TSS region transcription start site region 81546
Tssr81547 8 69902015 to 69902024 9 - TSS region transcription start site region 81547
Tssr77689 8 69902178 to 69902194 16 + TSS region transcription start site region 77689
Tssk6 8 69902184 to 69903518 1334 + protein coding gene testis-specific serine kinase 6
Tssr81548 8 69903158 to 69903222 64 - TSS region transcription start site region 81548
Gatad2a 8 69907076 to 69996384 89308 - protein coding gene GATA zinc finger domain containing 2A
Tssr81549 8 69908882 to 69908906 24 - TSS region transcription start site region 81549
Tssr81550 8 69908915 to 69908926 11 - TSS region transcription start site region 81550
Tssr81551 8 69909372 to 69909389 17 - TSS region transcription start site region 81551
Tssr81552 8 69911673 to 69911677 4 - TSS region transcription start site region 81552
Tssr81553 8 69917490 to 69917519 29 - TSS region transcription start site region 81553
Tssr81554 8 69924795 to 69924798 3 - TSS region transcription start site region 81554
Tssr81555 8 69936497 to 69936510 13 - TSS region transcription start site region 81555
Tssr81556 8 69958419 to 69958435 16 - TSS region transcription start site region 81556
Cpgi20429 8 69973402 to 69974896 1494 CpG island CpG island 20429
Tssr81557 8 69974118 to 69974160 42 - TSS region transcription start site region 81557
Tssr81558 8 69974235 to 69974257 22 - TSS region transcription start site region 81558
Tssr81559 8 69974261 to 69974315 54 - TSS region transcription start site region 81559
Tssr81560 8 69974318 to 69974333 15 - TSS region transcription start site region 81560
Tssr81561 8 69974347 to 69974364 17 - TSS region transcription start site region 81561
Tssr81562 8 69974367 to 69974407 40 - TSS region transcription start site region 81562
Tssr81563 8 69978305 to 69978309 4 - TSS region transcription start site region 81563
Tssr81564 8 69984994 to 69984999 5 - TSS region transcription start site region 81564
Tssr81565 8 69986150 to 69986153 3 - TSS region transcription start site region 81565
Tssr81566 8 69989757 to 69989776 19 - TSS region transcription start site region 81566
Tssr81567 8 69995022 to 69995025 3 - TSS region transcription start site region 81567
Cpgi20430 8 69995561 to 69997073 1512 CpG island CpG island 20430
Tssr81568 8 69996090 to 69996108 18 - TSS region transcription start site region 81568
Tssr81569 8 69996116 to 69996154 38 - TSS region transcription start site region 81569
Tssr81570 8 69996222 to 69996236 14 - TSS region transcription start site region 81570
Tssr81571 8 69996240 to 69996258 18 - TSS region transcription start site region 81571
Tssr81572 8 69996263 to 69996298 35 - TSS region transcription start site region 81572
Tssr81573 8 69996326 to 69996349 23 - TSS region transcription start site region 81573
Tssr81574 8 69996368 to 69996388 20 - TSS region transcription start site region 81574
Tssr77690 8 69996738 to 69996807 69 + TSS region transcription start site region 77690
Tssr77691 8 70001408 to 70001419 11 + TSS region transcription start site region 77691
Tssr77692 8 70001423 to 70001458 35 + TSS region transcription start site region 77692
Gm7730 8 70010549 to 70011002 453 - pseudogene predicted gene 7730
Tssr81575 8 70011022 to 70011062 40 - TSS region transcription start site region 81575
Mau2 8 70016123 to 70042734 26611 - protein coding gene MAU2 sister chromatid cohesion factor
Tssr81576 8 70018618 to 70018621 3 - TSS region transcription start site region 81576
Tssr81577 8 70029511 to 70029516 5 - TSS region transcription start site region 81577
Cpgi20431 8 70041899 to 70043530 1631 CpG island CpG island 20431
Tssr81578 8 70042689 to 70042713 24 - TSS region transcription start site region 81578
Tssr77693 8 70042768 to 70042837 69 + TSS region transcription start site region 77693
Sugp1 8 70042785 to 70071964 29179 + protein coding gene SURP and G patch domain containing 1
Tssr77694 8 70043018 to 70043062 44 + TSS region transcription start site region 77694
Tssr77695 8 70043092 to 70043110 18 + TSS region transcription start site region 77695
Tssr77696 8 70064827 to 70064835 8 + TSS region transcription start site region 77696
Tssr77697 8 70072810 to 70072822 12 + TSS region transcription start site region 77697
Tssr77698 8 70072896 to 70072961 65 + TSS region transcription start site region 77698
Cpgi20432 8 70072909 to 70073126 217 CpG island CpG island 20432
Tm6sf2 8 70072924 to 70080066 7142 + protein coding gene transmembrane 6 superfamily member 2
Tssr77699 8 70072983 to 70073006 23 + TSS region transcription start site region 77699
Tssr77700 8 70073031 to 70073040 9 + TSS region transcription start site region 77700
Tssr77701 8 70074450 to 70074477 27 + TSS region transcription start site region 77701
Cpgi20433 8 70083084 to 70083935 851 CpG island CpG island 20433
Tssr77702 8 70083453 to 70083468 15 + TSS region transcription start site region 77702
Tssr77703 8 70083470 to 70083473 3 + TSS region transcription start site region 77703
Tssr77704 8 70083491 to 70083508 17 + TSS region transcription start site region 77704
Tssr77705 8 70083509 to 70083547 38 + TSS region transcription start site region 77705
Hapln4 8 70083529 to 70090862 7333 + protein coding gene hyaluronan and proteoglycan link protein 4
Cpgi20434 8 70083959 to 70085225 1266 CpG island CpG island 20434
Cpgi20435 8 70086676 to 70087441 765 CpG island CpG island 20435
Cpgi20436 8 70087936 to 70088593 657 CpG island CpG island 20436
Tssr77706 8 70089431 to 70089456 25 + TSS region transcription start site region 77706
Ncan 8 70093085 to 70120866 27781 - protein coding gene neurocan
Tssr81579 8 70093580 to 70093602 22 - TSS region transcription start site region 81579
Tssr81580 8 70095147 to 70095158 11 - TSS region transcription start site region 81580
Tssr81581 8 70095173 to 70095206 33 - TSS region transcription start site region 81581
Tssr81582 8 70095239 to 70095258 19 - TSS region transcription start site region 81582
Tssr81583 8 70095278 to 70095296 18 - TSS region transcription start site region 81583
Tssr81584 8 70095534 to 70095550 16 - TSS region transcription start site region 81584
Tssr81585 8 70095689 to 70095700 11 - TSS region transcription start site region 81585
Tssr81586 8 70095803 to 70095814 11 - TSS region transcription start site region 81586
Tssr81587 8 70096067 to 70096078 11 - TSS region transcription start site region 81587
Mir7066 8 70102524 to 70102586 62 - miRNA gene microRNA 7066
Tssr81588 8 70108446 to 70108458 12 - TSS region transcription start site region 81588
Tssr81589 8 70108506 to 70108530 24 - TSS region transcription start site region 81589
Tssr81590 8 70110209 to 70110220 11 - TSS region transcription start site region 81590
Tssr81591 8 70110233 to 70110244 11 - TSS region transcription start site region 81591
Cpgi20437 8 70111324 to 70113029 1705 CpG island CpG island 20437
Cpgi20438 8 70120669 to 70120994 325 CpG island CpG island 20438
Tssr81592 8 70120816 to 70120832 16 - TSS region transcription start site region 81592
Gm25906 8 70123028 to 70123153 125 - snoRNA gene predicted gene, 25906
Rfxank 8 70130794 to 70139154 8360 - protein coding gene regulatory factor X-associated ankyrin-containing protein
Cpgi20439 8 70131099 to 70131634 535 CpG island CpG island 20439
Tssr77707 8 70131322 to 70131326 4 + TSS region transcription start site region 77707
Tssr77708 8 70131327 to 70131392 65 + TSS region transcription start site region 77708
Nr2c2ap 8 70131333 to 70133749 2416 + protein coding gene nuclear receptor 2C2-associated protein
Cpgi20440 8 70139017 to 70139941 924 CpG island CpG island 20440
Tssr81593 8 70139055 to 70139062 7 - TSS region transcription start site region 81593
Tssr81594 8 70139067 to 70139092 25 - TSS region transcription start site region 81594
Tssr81595 8 70139100 to 70139132 32 - TSS region transcription start site region 81595
Tssr81596 8 70139150 to 70139162 12 - TSS region transcription start site region 81596
Tssr81597 8 70139199 to 70139261 62 - TSS region transcription start site region 81597
Tssr77709 8 70139347 to 70139364 17 + TSS region transcription start site region 77709
Tssr77710 8 70139448 to 70139499 51 + TSS region transcription start site region 77710
Borcs8 8 70139499 to 70147319 7820 + protein coding gene BLOC-1 related complex subunit 8
Gm45929 8 70139499 to 70167488 27989 + protein coding gene predicted gene, 45929
Tssr77711 8 70139687 to 70139734 47 + TSS region transcription start site region 77711
Tssr77712 8 70141620 to 70141629 9 + TSS region transcription start site region 77712
Tssr77713 8 70148677 to 70148682 5 + TSS region transcription start site region 77713
Tssr77714 8 70152754 to 70152769 15 + TSS region transcription start site region 77714
Mef2b 8 70152761 to 70167488 14727 + protein coding gene myocyte enhancer factor 2B
Cpgi20441 8 70158394 to 70158894 500 CpG island CpG island 20441
Tssr77715 8 70158751 to 70158768 17 + TSS region transcription start site region 77715
Cpgi20442 8 70166010 to 70166227 217 CpG island CpG island 20442
Cpgi20443 8 70166646 to 70167169 523 CpG island CpG island 20443
Cpgi20444 8 70172130 to 70172604 474 CpG island CpG island 20444
Tmem161a 8 70172356 to 70183681 11325 + protein coding gene transmembrane protein 161A
Tssr77716 8 70172383 to 70172424 41 + TSS region transcription start site region 77716
Slc25a42 8 70184340 to 70212281 27941 - protein coding gene solute carrier family 25, member 42
Tssr81598 8 70188858 to 70188886 28 - TSS region transcription start site region 81598
Cpgi20445 8 70211661 to 70212996 1335 CpG island CpG island 20445
Tssr81599 8 70212251 to 70212265 14 - TSS region transcription start site region 81599
Tssr81600 8 70212268 to 70212300 32 - TSS region transcription start site region 81600
Armc6 8 70220172 to 70234422 14250 - protein coding gene armadillo repeat containing 6
Cpgi20446 8 70233849 to 70234983 1134 CpG island CpG island 20446
Tssr81601 8 70234097 to 70234160 63 - TSS region transcription start site region 81601
Tssr77717 8 70234187 to 70234228 41 + TSS region transcription start site region 77717
Sugp2 8 70234209 to 70263105 28896 + protein coding gene SURP and G patch domain containing 2
Tssr81602 8 70234401 to 70234459 58 - TSS region transcription start site region 81602
Tssr77718 8 70234532 to 70234608 76 + TSS region transcription start site region 77718
Tssr77719 8 70234613 to 70234628 15 + TSS region transcription start site region 77719
Tssr77720 8 70234641 to 70234655 14 + TSS region transcription start site region 77720
Tssr77721 8 70248055 to 70248072 17 + TSS region transcription start site region 77721
Tssr77722 8 70270244 to 70270262 18 + TSS region transcription start site region 77722
Gm38427 8 70272349 to 70279916 7567 + unclassified gene predicted gene, 38427
Tssr77723 8 70274738 to 70274751 13 + TSS region transcription start site region 77723
Tssr2595 8 70278073 to 70278086 13 + TSS region transcription start site region 2595
Tssr77724 8 70278101 to 70278113 12 + TSS region transcription start site region 77724
Cpgi20447 8 70278336 to 70278518 182 CpG island CpG island 20447
Cpgi20448 8 70282471 to 70283908 1437 CpG island CpG island 20448
Homer3 8 70282891 to 70294361 11470 + protein coding gene homer scaffolding protein 3
Tssr77725 8 70282978 to 70283044 66 + TSS region transcription start site region 77725
Tssr77726 8 70283055 to 70283080 25 + TSS region transcription start site region 77726
Ddx49 8 70292866 to 70302489 9623 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 49
Cpgi20449 8 70302004 to 70303037 1033 CpG island CpG island 20449
Tssr81603 8 70302446 to 70302478 32 - TSS region transcription start site region 81603
Tssr81604 8 70302487 to 70302488 1 - TSS region transcription start site region 81604
Tssr77727 8 70302543 to 70302630 87 + TSS region transcription start site region 77727
Tssr77728 8 70302754 to 70302760 6 + TSS region transcription start site region 77728
Tssr77729 8 70302761 to 70302804 43 + TSS region transcription start site region 77729
Cope 8 70302785 to 70312990 10205 + protein coding gene coatomer protein complex, subunit epsilon
Tssr81605 8 70302879 to 70302892 13 - TSS region transcription start site region 81605
Tssr81606 8 70302894 to 70302934 40 - TSS region transcription start site region 81606
Tssr81607 8 70303123 to 70303127 4 - TSS region transcription start site region 81607
Tssr2596 8 70310377 to 70310397 20 + TSS region transcription start site region 2596
Cpgi20450 8 70315406 to 70316594 1188 CpG island CpG island 20450
Tssr77730 8 70315759 to 70315835 76 + TSS region transcription start site region 77730
Cers1 8 70315775 to 70331588 15813 + protein coding gene ceramide synthase 1
Tssr77731 8 70315836 to 70315846 10 + TSS region transcription start site region 77731
Tssr81608 8 70316203 to 70316217 14 - TSS region transcription start site region 81608
Gdf1 8 70329817 to 70331587 1770 + protein coding gene growth differentiation factor 1
Cpgi20451 8 70329878 to 70331833 1955 CpG island CpG island 20451
Tssr77732 8 70329882 to 70329904 22 + TSS region transcription start site region 77732
Tssr77733 8 70329907 to 70329929 22 + TSS region transcription start site region 77733
Upf1 8 70331525 to 70353278 21753 - protein coding gene UPF1 regulator of nonsense transcripts homolog (yeast)
Tssr81609 8 70331940 to 70331944 4 - TSS region transcription start site region 81609
Cpgi20452 8 70332055 to 70332600 545 CpG island CpG island 20452
Cpgi20453 8 70352074 to 70353900 1826 CpG island CpG island 20453
Tssr77734 8 70352765 to 70352787 22 + TSS region transcription start site region 77734
Tssr81610 8 70353243 to 70353336 93 - TSS region transcription start site region 81610