Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:68277635-69757672

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179 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh2d4a 8 68276567 to 68347699 71132 + protein coding gene SH2 domain containing 4A
Gm45739 8 68299069 to 68299456 387 + pseudogene predicted gene 45739
Gm19170 8 68316997 to 68318080 1083 - pseudogene predicted gene, 19170
Tssr77597 8 68317711 to 68317717 6 + TSS region transcription start site region 77597
Csgalnact1 8 68356781 to 68735146 378365 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 1
1700125H03Rik 8 68368459 to 68375710 7251 + antisense lncRNA gene RIKEN cDNA 1700125H03 gene
Tssr77598 8 68368461 to 68368469 8 + TSS region transcription start site region 77598
Gm15656 8 68457148 to 68458681 1533 + antisense lncRNA gene predicted gene 15656
Cpgi20402 8 68461116 to 68461446 330 CpG island CpG island 20402
Tssr2591 8 68533380 to 68533386 6 - TSS region transcription start site region 2591
9530019H20Rik 8 68536034 to 68540260 4226 unclassified non-coding RNA gene RIKEN cDNA 9530019H20 gene
Tssr81495 8 68557017 to 68557052 35 - TSS region transcription start site region 81495
Gm15654 8 68620138 to 68620437 299 + pseudogene predicted gene 15654
A130009I22Rik 8 68627264 to 68630144 2880 unclassified gene RIKEN cDNA A130009I22 gene
Tssr77599 8 68636242 to 68636246 4 + TSS region transcription start site region 77599
Cpgi20403 8 68734454 to 68735490 1036 CpG island CpG island 20403
Tssr81496 8 68735058 to 68735147 89 - TSS region transcription start site region 81496
Tssr2592 8 68772443 to 68772468 25 + TSS region transcription start site region 2592
Cpgi20404 8 68793530 to 68794584 1054 CpG island CpG island 20404
Ints10 8 68793928 to 68829410 35482 + protein coding gene integrator complex subunit 10
Tssr77600 8 68793940 to 68794016 76 + TSS region transcription start site region 77600
Gm15549 8 68798867 to 68799488 621 + pseudogene predicted gene 15549
Tssr81497 8 68852595 to 68852604 9 - TSS region transcription start site region 81497
D8Mit26 8 68879344 to 68879515 171 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 26
Cpgi20405 8 68880413 to 68881624 1211 CpG island CpG island 20405
Tssr77601 8 68880548 to 68880564 16 + TSS region transcription start site region 77601
Lpl 8 68880555 to 68906932 26377 + protein coding gene lipoprotein lipase
Tssr77602 8 68880631 to 68880642 11 + TSS region transcription start site region 77602
Tssr77603 8 68880650 to 68880672 22 + TSS region transcription start site region 77603
Tssr77604 8 68880714 to 68880717 3 + TSS region transcription start site region 77604
Tssr77605 8 68880723 to 68880730 7 + TSS region transcription start site region 77605
Tssr77606 8 68884347 to 68884350 3 + TSS region transcription start site region 77606
Tssr77607 8 68884413 to 68884424 11 + TSS region transcription start site region 77607
Tssr77608 8 68884434 to 68884451 17 + TSS region transcription start site region 77608
Tssr77609 8 68884469 to 68884493 24 + TSS region transcription start site region 77609
Tssr77610 8 68884540 to 68884561 21 + TSS region transcription start site region 77610
Tssr77611 8 68886916 to 68886926 10 + TSS region transcription start site region 77611
Tssr77612 8 68886941 to 68886963 22 + TSS region transcription start site region 77612
Tssr81498 8 68887487 to 68887525 38 - TSS region transcription start site region 81498
Tssr77613 8 68892589 to 68892726 137 + TSS region transcription start site region 77613
Tssr81499 8 68892684 to 68892712 28 - TSS region transcription start site region 81499
Tssr77614 8 68894618 to 68894716 98 + TSS region transcription start site region 77614
Tssr81500 8 68894666 to 68894693 27 - TSS region transcription start site region 81500
Tssr77615 8 68895659 to 68895726 67 + TSS region transcription start site region 77615
Tssr77616 8 68895757 to 68895770 13 + TSS region transcription start site region 77616
Tssr77617 8 68895797 to 68895843 46 + TSS region transcription start site region 77617
Tssr77618 8 68895844 to 68895853 9 + TSS region transcription start site region 77618
Tssr77619 8 68896588 to 68896606 18 + TSS region transcription start site region 77619
Tssr77620 8 68896607 to 68896651 44 + TSS region transcription start site region 77620
Tssr81501 8 68896663 to 68896725 62 - TSS region transcription start site region 81501
Tssr77621 8 68896685 to 68896688 3 + TSS region transcription start site region 77621
Tssr77622 8 68896690 to 68896701 11 + TSS region transcription start site region 77622
Tssr77623 8 68896733 to 68896741 8 + TSS region transcription start site region 77623
Tssr77624 8 68896757 to 68896774 17 + TSS region transcription start site region 77624
Tssr77625 8 68896779 to 68896791 12 + TSS region transcription start site region 77625
Tssr77626 8 68896794 to 68896804 10 + TSS region transcription start site region 77626
Tssr77627 8 68899475 to 68899521 46 + TSS region transcription start site region 77627
Tssr77628 8 68901145 to 68901219 74 + TSS region transcription start site region 77628
Tssr77629 8 68901225 to 68901279 54 + TSS region transcription start site region 77629
Tssr81502 8 68901255 to 68901292 37 - TSS region transcription start site region 81502
Tssr81503 8 68901299 to 68901314 15 - TSS region transcription start site region 81503
Tssr77630 8 68902296 to 68902318 22 + TSS region transcription start site region 77630
Tssr77631 8 68902321 to 68902334 13 + TSS region transcription start site region 77631
Tssr77632 8 68904499 to 68904514 15 + TSS region transcription start site region 77632
Tssr81504 8 68904550 to 68904580 30 - TSS region transcription start site region 81504
Tssr77633 8 68904616 to 68904636 20 + TSS region transcription start site region 77633
Tssr77634 8 68904691 to 68904710 19 + TSS region transcription start site region 77634
Tssr77635 8 68904832 to 68904854 22 + TSS region transcription start site region 77635
Tssr77636 8 68904866 to 68904880 14 + TSS region transcription start site region 77636
Tssr77637 8 68904881 to 68904902 21 + TSS region transcription start site region 77637
Tssr77638 8 68904983 to 68904998 15 + TSS region transcription start site region 77638
Tssr77639 8 68905064 to 68905139 75 + TSS region transcription start site region 77639
Tssr81505 8 68905126 to 68905154 28 - TSS region transcription start site region 81505
Tssr77640 8 68905140 to 68905162 22 + TSS region transcription start site region 77640
Tssr81506 8 68905683 to 68905696 13 - TSS region transcription start site region 81506
Tssr81507 8 68905718 to 68905731 13 - TSS region transcription start site region 81507
Tssr81508 8 68905732 to 68905746 14 - TSS region transcription start site region 81508
Tssr81509 8 68905761 to 68905783 22 - TSS region transcription start site region 81509
Tssr77641 8 68905811 to 68905829 18 + TSS region transcription start site region 77641
Tssr77642 8 68905836 to 68905847 11 + TSS region transcription start site region 77642
Tssr77643 8 68905971 to 68905978 7 + TSS region transcription start site region 77643
Tssr77644 8 68906023 to 68906034 11 + TSS region transcription start site region 77644
Tssr77645 8 68906076 to 68906087 11 + TSS region transcription start site region 77645
Tssr77646 8 68906089 to 68906100 11 + TSS region transcription start site region 77646
Tssr77647 8 68906146 to 68906157 11 + TSS region transcription start site region 77647
Tssr77648 8 68906188 to 68906197 9 + TSS region transcription start site region 77648
Tssr77649 8 68906203 to 68906210 7 + TSS region transcription start site region 77649
Tssr77650 8 68906324 to 68906331 7 + TSS region transcription start site region 77650
Tssr77651 8 68906358 to 68906366 8 + TSS region transcription start site region 77651
Tssr77652 8 68906459 to 68906470 11 + TSS region transcription start site region 77652
Tssr77653 8 68906500 to 68906509 9 + TSS region transcription start site region 77653
Tssr81510 8 68906923 to 68906935 12 - TSS region transcription start site region 81510
Gm45780 8 68950321 to 68950544 223 + pseudogene predicted gene 45780
Gm32997 8 68954003 to 68956183 2180 + lncRNA gene predicted gene, 32997
Gm33103 8 68971145 to 69001683 30538 - lincRNA gene predicted gene, 33103
Tssr81511 8 68993218 to 68993226 8 - TSS region transcription start site region 81511
Tssr77654 8 68993356 to 68993370 14 + TSS region transcription start site region 77654
Gm33052 8 68993387 to 68999665 6278 + lncRNA gene predicted gene, 33052
Tssr77655 8 69017635 to 69017672 37 + TSS region transcription start site region 77655
Tssr81512 8 69019841 to 69019852 11 - TSS region transcription start site region 81512
Tssr81513 8 69027650 to 69027693 43 - TSS region transcription start site region 81513
Slc18a1 8 69037711 to 69089235 51524 - protein coding gene solute carrier family 18 (vesicular monoamine), member 1
Gm15716 8 69044754 to 69063422 18668 + antisense lncRNA gene predicted gene 15716
Tssr81514 8 69077221 to 69077243 22 - TSS region transcription start site region 81514
Tssr81515 8 69077252 to 69077269 17 - TSS region transcription start site region 81515
Tssr81516 8 69077452 to 69077463 11 - TSS region transcription start site region 81516
Tssr81517 8 69084848 to 69084855 7 - TSS region transcription start site region 81517
Cpgi20406 8 69088503 to 69089414 911 CpG island CpG island 20406
Tssr77656 8 69088716 to 69088727 11 + TSS region transcription start site region 77656
Tssr77657 8 69088733 to 69088744 11 + TSS region transcription start site region 77657
Atp6v1b2 8 69088736 to 69113718 24982 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit B2
Tssr77658 8 69088753 to 69088796 43 + TSS region transcription start site region 77658
Tssr81518 8 69089200 to 69089215 15 - TSS region transcription start site region 81518
Tssr77659 8 69096234 to 69096248 14 + TSS region transcription start site region 77659
Tssr77660 8 69103644 to 69103703 59 + TSS region transcription start site region 77660
Tssr77661 8 69105900 to 69105926 26 + TSS region transcription start site region 77661
Tssr77662 8 69112451 to 69112497 46 + TSS region transcription start site region 77662
Tssr81519 8 69113697 to 69113715 18 - TSS region transcription start site region 81519
Tssr81520 8 69121409 to 69121422 13 - TSS region transcription start site region 81520
Cpgi20407 8 69121586 to 69121883 297 CpG island CpG island 20407
C230098O21Rik 8 69132668 to 69134710 2042 unclassified gene RIKEN cDNA C230098O21 gene
Lzts1 8 69132669 to 69184220 51551 - protein coding gene leucine zipper, putative tumor suppressor 1
Tssr81521 8 69134693 to 69134697 4 - TSS region transcription start site region 81521
Gm39187 8 69157186 to 69159724 2538 + lncRNA gene predicted gene, 39187
Tssr77663 8 69157777 to 69157801 24 + TSS region transcription start site region 77663
Cpgi20408 8 69183787 to 69184427 640 CpG island CpG island 20408
Tssr81522 8 69184177 to 69184240 63 - TSS region transcription start site region 81522
Tssr81523 8 69184249 to 69184257 8 - TSS region transcription start site region 81523
Gm39188 8 69206376 to 69208981 2605 - lncRNA gene predicted gene, 39188
Cpgi20409 8 69208839 to 69209279 440 CpG island CpG island 20409
Tssr77664 8 69209033 to 69209073 40 + TSS region transcription start site region 77664
Zfp930 8 69209046 to 69230539 21493 + protein coding gene zinc finger protein 930
Tssr77665 8 69209083 to 69209094 11 + TSS region transcription start site region 77665
Tssr77666 8 69209095 to 69209106 11 + TSS region transcription start site region 77666
Gm33178 8 69225536 to 69225792 256 - pseudogene predicted gene, 33178
Gm7684 8 69239202 to 69240030 828 - pseudogene predicted gene 7684
D130040H23Rik 8 69271053 to 69303384 32331 + protein coding gene RIKEN cDNA D130040H23 gene
Tssr77667 8 69271090 to 69271143 53 + TSS region transcription start site region 77667
Gm7688 8 69329218 to 69329554 336 + pseudogene predicted gene 7688
E230024E03Rik 8 69366509 to 69369565 3056 unclassified gene RIKEN cDNA E230024E03 gene
Gm10033 8 69371025 to 69395544 24519 - pseudogene predicted gene 10033
D8Mit130 8 69379377 to 69379526 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 130
Tssr81524 8 69387130 to 69387133 3 - TSS region transcription start site region 81524
Cpgi20410 8 69395299 to 69395609 310 CpG island CpG island 20410
Tssr81525 8 69395492 to 69395553 61 - TSS region transcription start site region 81525
Tssr81526 8 69395564 to 69395575 11 - TSS region transcription start site region 81526
Cpgi20411 8 69399403 to 69399824 421 CpG island CpG island 20411
Gm25661 8 69399725 to 69400020 295 + ribozyme gene predicted gene, 25661
Gm45848 8 69419497 to 69425233 5736 + lincRNA gene predicted gene 45848
Gm9495 8 69427980 to 69453565 25585 - protein coding gene predicted gene 9495
Tssr81527 8 69453537 to 69453582 45 - TSS region transcription start site region 81527
Gm45850 8 69470069 to 69470406 337 + pseudogene predicted gene 45850
Gm43263 8 69473492 to 69474842 1350 - lincRNA gene predicted gene 43263
Gm7697 8 69482621 to 69522925 40304 - protein coding gene predicted gene 7697
Tssr81528 8 69522957 to 69522994 37 - TSS region transcription start site region 81528
Rps7-ps1 8 69540957 to 69541347 390 + pseudogene ribosomal protein S7, pseudogene 1
Gm3365 8 69554777 to 69576208 21431 - pseudogene predicted gene 3365
Cpgi20412 8 69584673 to 69585182 509 CpG island CpG island 20412
Zfp868 8 69610857 to 69625548 14691 - protein coding gene zinc finger protein 868
Cpgi20413 8 69625060 to 69625733 673 CpG island CpG island 20413
Tssr81529 8 69625146 to 69625193 47 - TSS region transcription start site region 81529
Tssr81530 8 69625503 to 69625559 56 - TSS region transcription start site region 81530
Cpgi20414 8 69654323 to 69655145 822 CpG island CpG island 20414
Zfp964 8 69654479 to 69666982 12503 + protein coding gene zinc finger protein 964
Tssr77668 8 69654482 to 69654497 15 + TSS region transcription start site region 77668
Zfp869 8 69706332 to 69710724 4392 - protein coding gene zinc finger protein 869
Cpgi20415 8 69716378 to 69717152 774 CpG island CpG island 20415
Tssr81531 8 69716415 to 69716424 9 - TSS region transcription start site region 81531
Tssr81532 8 69716437 to 69716492 55 - TSS region transcription start site region 81532
Tssr77669 8 69716580 to 69716589 9 + TSS region transcription start site region 77669
Tssr81533 8 69716827 to 69716843 16 - TSS region transcription start site region 81533
Tssr81534 8 69716850 to 69716912 62 - TSS region transcription start site region 81534
Zfp963 8 69741639 to 69749962 8323 - protein coding gene zinc finger protein 963
Gm20422 8 69742862 to 69774886 32024 - protein coding gene predicted gene 20422
Cpgi20416 8 69749523 to 69750151 628 CpG island CpG island 20416
1700093C20Rik 8 69749692 to 69750625 933 unclassified gene RIKEN cDNA 1700093C20 gene
Tssr81535 8 69749938 to 69749970 32 - TSS region transcription start site region 81535
Tssr2593 8 69749979 to 69749990 11 - TSS region transcription start site region 2593
Gm19893 8 69755790 to 69756396 606 + pseudogene predicted gene, 19893