Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:66816823-69308100

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
LOC665443 8 66845797 to 66846592 795 + pseudogene RNA binding motif protein 7 pseudogene
Cpgi20397 8 66860052 to 66860517 465 CpG island CpG island 20397
Tssr77584 8 66860215 to 66860287 72 + TSS region transcription start site region 77584
Naf1 8 66860217 to 66890564 30347 + protein coding gene nuclear assembly factor 1 ribonucleoprotein
Tssr77585 8 66860294 to 66860314 20 + TSS region transcription start site region 77585
Cpgi20398 8 66860813 to 66861503 690 CpG island CpG island 20398
Tssr77586 8 66889235 to 66889248 13 + TSS region transcription start site region 77586
Gm39185 8 66905997 to 66937826 31829 + lincRNA gene predicted gene, 39185
Gm25275 8 66918650 to 66918778 128 - snoRNA gene predicted gene, 25275
Tssr81460 8 66971949 to 66971950 1 - TSS region transcription start site region 81460
Tssr2588 8 67050751 to 67050757 6 + TSS region transcription start site region 2588
Gm7639 8 67053650 to 67054133 483 - pseudogene predicted gene 7639
Gm45827 8 67176771 to 67177787 1016 + lincRNA gene predicted gene 45827
Gm32623 8 67198946 to 67235307 36361 - lncRNA gene predicted gene, 32623
Gm24274 8 67213296 to 67213419 123 - snRNA gene predicted gene, 24274
Gm24677 8 67279082 to 67279231 149 - snoRNA gene predicted gene, 24677
Gm45880 8 67310687 to 67311539 852 + pseudogene predicted gene 45880
Tssr77587 8 67333256 to 67333260 4 + TSS region transcription start site region 77587
Gm10660 8 67352104 to 67365004 12900 - lincRNA gene predicted gene 10660
Nat1 8 67485171 to 67492582 7411 + protein coding gene N-acetyl transferase 1
D8Srb1 8 67493936 to 67494113 177 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 1
Tssr77588 8 67494843 to 67494883 40 + TSS region transcription start site region 77588
Nat2 8 67494858 to 67502584 7726 + protein coding gene N-acetyltransferase 2 (arylamine N-acetyltransferase)
D8Mit71 8 67496627 to 67496764 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 71
D8Srb2 8 67496644 to 67496796 152 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 2
D8Srb3 8 67498724 to 67498900 176 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 3
D8Srb4 8 67503029 to 67503237 208 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 4
Gm9755 8 67514235 to 67515590 1355 - pseudogene predicted pseudogene 9755
Tssr81461 8 67515554 to 67515594 40 - TSS region transcription start site region 81461
Nat3 8 67523854 to 67548627 24773 + protein coding gene N-acetyltransferase 3
Gm36247 8 67584906 to 67585190 284 - pseudogene predicted gene, 36247
Gm44391 8 67629014 to 67629106 92 - miRNA gene predicted gene, 44391
Tssr77589 8 67685467 to 67685483 16 + TSS region transcription start site region 77589
Tssr77590 8 67685509 to 67685526 17 + TSS region transcription start site region 77590
Psd3 8 67689082 to 68206057 516975 - protein coding gene pleckstrin and Sec7 domain containing 3
Tssr81462 8 67693513 to 67693516 3 - TSS region transcription start site region 81462
Tssr2589 8 67696042 to 67696060 18 - TSS region transcription start site region 2589
D8Mit340 8 67740709 to 67740824 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 340
Tssr81463 8 67818218 to 67818269 51 - TSS region transcription start site region 81463
Tssr81464 8 67818284 to 67818320 36 - TSS region transcription start site region 81464
Tssr81465 8 67833874 to 67833877 3 - TSS region transcription start site region 81465
Tssr81466 8 67862069 to 67862073 4 - TSS region transcription start site region 81466
Gm32888 8 67862928 to 67863826 898 - lncRNA gene predicted gene, 32888
Tssr81467 8 67910911 to 67910935 24 - TSS region transcription start site region 81467
Tssr81468 8 67920961 to 67920974 13 - TSS region transcription start site region 81468
Tssr81469 8 67920997 to 67921012 15 - TSS region transcription start site region 81469
Tssr81470 8 67950339 to 67950388 49 - TSS region transcription start site region 81470
Tssr77591 8 67956545 to 67956558 13 + TSS region transcription start site region 77591
Tssr77592 8 67956754 to 67956788 34 + TSS region transcription start site region 77592
Gm15991 8 67956769 to 67978051 21282 + antisense lncRNA gene predicted gene 15991
Tssr81471 8 67974539 to 67974548 9 - TSS region transcription start site region 81471
Tssr81472 8 67974567 to 67974596 29 - TSS region transcription start site region 81472
Tssr77593 8 68009084 to 68009088 4 + TSS region transcription start site region 77593
Gm22018 8 68010340 to 68010470 130 + snoRNA gene predicted gene, 22018
Tssr81473 8 68042687 to 68042702 15 - TSS region transcription start site region 81473
Tssr81474 8 68061373 to 68061376 3 - TSS region transcription start site region 81474
Cpgi20399 8 68061823 to 68063100 1277 CpG island CpG island 20399
Tssr81475 8 68062246 to 68062344 98 - TSS region transcription start site region 81475
Tssr81476 8 68062444 to 68062504 60 - TSS region transcription start site region 81476
Tssr81477 8 68121052 to 68121074 22 - TSS region transcription start site region 81477
Tssr81478 8 68121320 to 68121369 49 - TSS region transcription start site region 81478
Tssr81479 8 68121620 to 68121637 17 - TSS region transcription start site region 81479
D8Mit29 8 68123250 to 68123357 107 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 29
Q 8 68123250 to 94173804 26050554 heritable phenotypic marker quinky
Tssr2590 8 68157563 to 68157566 3 + TSS region transcription start site region 2590
Tssr81480 8 68158489 to 68158516 27 - TSS region transcription start site region 81480
Tssr81481 8 68204915 to 68204919 4 - TSS region transcription start site region 81481
Tssr81482 8 68205742 to 68205748 6 - TSS region transcription start site region 81482
Tssr81483 8 68206012 to 68206026 14 - TSS region transcription start site region 81483
Tssr81484 8 68206043 to 68206060 17 - TSS region transcription start site region 81484
Tssr81485 8 68206061 to 68206083 22 - TSS region transcription start site region 81485
Cpgi20400 8 68206835 to 68207004 169 CpG island CpG island 20400
Tssr81486 8 68212007 to 68212016 9 - TSS region transcription start site region 81486
Tssr81487 8 68212029 to 68212050 21 - TSS region transcription start site region 81487
Tssr81488 8 68212054 to 68212065 11 - TSS region transcription start site region 81488
Tssr81489 8 68212071 to 68212088 17 - TSS region transcription start site region 81489
Tssr81490 8 68212098 to 68212115 17 - TSS region transcription start site region 81490
Tssr81491 8 68212120 to 68212136 16 - TSS region transcription start site region 81491
Tssr81492 8 68212192 to 68212204 12 - TSS region transcription start site region 81492
Tssr81493 8 68212228 to 68212240 12 - TSS region transcription start site region 81493
Tssr81494 8 68212254 to 68212266 12 - TSS region transcription start site region 81494
Gm26659 8 68218173 to 68228413 10240 - lincRNA gene predicted gene, 26659
Char12 8 68269827 to 82600347 14330520 QTL P. chabaudi malaria resistance QTL 12
D8Mit73 8 68269827 to 68270001 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 73
Cpgi20401 8 68276565 to 68277564 999 CpG island CpG island 20401
Sh2d4a 8 68276567 to 68347699 71132 + protein coding gene SH2 domain containing 4A
Tssr77594 8 68276691 to 68276705 14 + TSS region transcription start site region 77594
Tssr77595 8 68276713 to 68276752 39 + TSS region transcription start site region 77595
Tssr77596 8 68276803 to 68276815 12 + TSS region transcription start site region 77596
Gm45739 8 68299069 to 68299456 387 + pseudogene predicted gene 45739
Gm19170 8 68316997 to 68318080 1083 - pseudogene predicted gene, 19170
Tssr77597 8 68317711 to 68317717 6 + TSS region transcription start site region 77597
Csgalnact1 8 68356781 to 68735146 378365 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 1
1700125H03Rik 8 68368459 to 68375710 7251 + antisense lncRNA gene RIKEN cDNA 1700125H03 gene
Tssr77598 8 68368461 to 68368469 8 + TSS region transcription start site region 77598
Gm15656 8 68457148 to 68458681 1533 + antisense lncRNA gene predicted gene 15656
Cpgi20402 8 68461116 to 68461446 330 CpG island CpG island 20402
Tssr2591 8 68533380 to 68533386 6 - TSS region transcription start site region 2591
9530019H20Rik 8 68536034 to 68540260 4226 unclassified non-coding RNA gene RIKEN cDNA 9530019H20 gene
Tssr81495 8 68557017 to 68557052 35 - TSS region transcription start site region 81495
Gm15654 8 68620138 to 68620437 299 + pseudogene predicted gene 15654
A130009I22Rik 8 68627264 to 68630144 2880 unclassified gene RIKEN cDNA A130009I22 gene
Tssr77599 8 68636242 to 68636246 4 + TSS region transcription start site region 77599
Cpgi20403 8 68734454 to 68735490 1036 CpG island CpG island 20403
Tssr81496 8 68735058 to 68735147 89 - TSS region transcription start site region 81496
Tssr2592 8 68772443 to 68772468 25 + TSS region transcription start site region 2592
Cpgi20404 8 68793530 to 68794584 1054 CpG island CpG island 20404
Ints10 8 68793928 to 68829410 35482 + protein coding gene integrator complex subunit 10
Tssr77600 8 68793940 to 68794016 76 + TSS region transcription start site region 77600
Gm15549 8 68798867 to 68799488 621 + pseudogene predicted gene 15549
Tssr81497 8 68852595 to 68852604 9 - TSS region transcription start site region 81497
D8Mit26 8 68879344 to 68879515 171 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 26
Cpgi20405 8 68880413 to 68881624 1211 CpG island CpG island 20405
Tssr77601 8 68880548 to 68880564 16 + TSS region transcription start site region 77601
Lpl 8 68880555 to 68906932 26377 + protein coding gene lipoprotein lipase
Tssr77602 8 68880631 to 68880642 11 + TSS region transcription start site region 77602
Tssr77603 8 68880650 to 68880672 22 + TSS region transcription start site region 77603
Tssr77604 8 68880714 to 68880717 3 + TSS region transcription start site region 77604
Tssr77605 8 68880723 to 68880730 7 + TSS region transcription start site region 77605
Tssr77606 8 68884347 to 68884350 3 + TSS region transcription start site region 77606
Tssr77607 8 68884413 to 68884424 11 + TSS region transcription start site region 77607
Tssr77608 8 68884434 to 68884451 17 + TSS region transcription start site region 77608
Tssr77609 8 68884469 to 68884493 24 + TSS region transcription start site region 77609
Tssr77610 8 68884540 to 68884561 21 + TSS region transcription start site region 77610
Tssr77611 8 68886916 to 68886926 10 + TSS region transcription start site region 77611
Tssr77612 8 68886941 to 68886963 22 + TSS region transcription start site region 77612
Tssr81498 8 68887487 to 68887525 38 - TSS region transcription start site region 81498
Tssr77613 8 68892589 to 68892726 137 + TSS region transcription start site region 77613
Tssr81499 8 68892684 to 68892712 28 - TSS region transcription start site region 81499
Tssr77614 8 68894618 to 68894716 98 + TSS region transcription start site region 77614
Tssr81500 8 68894666 to 68894693 27 - TSS region transcription start site region 81500
Tssr77615 8 68895659 to 68895726 67 + TSS region transcription start site region 77615
Tssr77616 8 68895757 to 68895770 13 + TSS region transcription start site region 77616
Tssr77617 8 68895797 to 68895843 46 + TSS region transcription start site region 77617
Tssr77618 8 68895844 to 68895853 9 + TSS region transcription start site region 77618
Tssr77619 8 68896588 to 68896606 18 + TSS region transcription start site region 77619
Tssr77620 8 68896607 to 68896651 44 + TSS region transcription start site region 77620
Tssr81501 8 68896663 to 68896725 62 - TSS region transcription start site region 81501
Tssr77621 8 68896685 to 68896688 3 + TSS region transcription start site region 77621
Tssr77622 8 68896690 to 68896701 11 + TSS region transcription start site region 77622
Tssr77623 8 68896733 to 68896741 8 + TSS region transcription start site region 77623
Tssr77624 8 68896757 to 68896774 17 + TSS region transcription start site region 77624
Tssr77625 8 68896779 to 68896791 12 + TSS region transcription start site region 77625
Tssr77626 8 68896794 to 68896804 10 + TSS region transcription start site region 77626
Tssr77627 8 68899475 to 68899521 46 + TSS region transcription start site region 77627
Tssr77628 8 68901145 to 68901219 74 + TSS region transcription start site region 77628
Tssr77629 8 68901225 to 68901279 54 + TSS region transcription start site region 77629
Tssr81502 8 68901255 to 68901292 37 - TSS region transcription start site region 81502
Tssr81503 8 68901299 to 68901314 15 - TSS region transcription start site region 81503
Tssr77630 8 68902296 to 68902318 22 + TSS region transcription start site region 77630
Tssr77631 8 68902321 to 68902334 13 + TSS region transcription start site region 77631
Tssr77632 8 68904499 to 68904514 15 + TSS region transcription start site region 77632
Tssr81504 8 68904550 to 68904580 30 - TSS region transcription start site region 81504
Tssr77633 8 68904616 to 68904636 20 + TSS region transcription start site region 77633
Tssr77634 8 68904691 to 68904710 19 + TSS region transcription start site region 77634
Tssr77635 8 68904832 to 68904854 22 + TSS region transcription start site region 77635
Tssr77636 8 68904866 to 68904880 14 + TSS region transcription start site region 77636
Tssr77637 8 68904881 to 68904902 21 + TSS region transcription start site region 77637
Tssr77638 8 68904983 to 68904998 15 + TSS region transcription start site region 77638
Tssr77639 8 68905064 to 68905139 75 + TSS region transcription start site region 77639
Tssr81505 8 68905126 to 68905154 28 - TSS region transcription start site region 81505
Tssr77640 8 68905140 to 68905162 22 + TSS region transcription start site region 77640
Tssr81506 8 68905683 to 68905696 13 - TSS region transcription start site region 81506
Tssr81507 8 68905718 to 68905731 13 - TSS region transcription start site region 81507
Tssr81508 8 68905732 to 68905746 14 - TSS region transcription start site region 81508
Tssr81509 8 68905761 to 68905783 22 - TSS region transcription start site region 81509
Tssr77641 8 68905811 to 68905829 18 + TSS region transcription start site region 77641
Tssr77642 8 68905836 to 68905847 11 + TSS region transcription start site region 77642
Tssr77643 8 68905971 to 68905978 7 + TSS region transcription start site region 77643
Tssr77644 8 68906023 to 68906034 11 + TSS region transcription start site region 77644
Tssr77645 8 68906076 to 68906087 11 + TSS region transcription start site region 77645
Tssr77646 8 68906089 to 68906100 11 + TSS region transcription start site region 77646
Tssr77647 8 68906146 to 68906157 11 + TSS region transcription start site region 77647
Tssr77648 8 68906188 to 68906197 9 + TSS region transcription start site region 77648
Tssr77649 8 68906203 to 68906210 7 + TSS region transcription start site region 77649
Tssr77650 8 68906324 to 68906331 7 + TSS region transcription start site region 77650
Tssr77651 8 68906358 to 68906366 8 + TSS region transcription start site region 77651
Tssr77652 8 68906459 to 68906470 11 + TSS region transcription start site region 77652
Tssr77653 8 68906500 to 68906509 9 + TSS region transcription start site region 77653
Tssr81510 8 68906923 to 68906935 12 - TSS region transcription start site region 81510
Gm45780 8 68950321 to 68950544 223 + pseudogene predicted gene 45780
Gm32997 8 68954003 to 68956183 2180 + lncRNA gene predicted gene, 32997
Gm33103 8 68971145 to 69001683 30538 - lincRNA gene predicted gene, 33103
Tssr81511 8 68993218 to 68993226 8 - TSS region transcription start site region 81511
Tssr77654 8 68993356 to 68993370 14 + TSS region transcription start site region 77654
Gm33052 8 68993387 to 68999665 6278 + lncRNA gene predicted gene, 33052
Tssr77655 8 69017635 to 69017672 37 + TSS region transcription start site region 77655
Tssr81512 8 69019841 to 69019852 11 - TSS region transcription start site region 81512
Tssr81513 8 69027650 to 69027693 43 - TSS region transcription start site region 81513
Slc18a1 8 69037711 to 69089235 51524 - protein coding gene solute carrier family 18 (vesicular monoamine), member 1
Gm15716 8 69044754 to 69063422 18668 + antisense lncRNA gene predicted gene 15716
Tssr81514 8 69077221 to 69077243 22 - TSS region transcription start site region 81514
Tssr81515 8 69077252 to 69077269 17 - TSS region transcription start site region 81515
Tssr81516 8 69077452 to 69077463 11 - TSS region transcription start site region 81516
Tssr81517 8 69084848 to 69084855 7 - TSS region transcription start site region 81517
Cpgi20406 8 69088503 to 69089414 911 CpG island CpG island 20406
Tssr77656 8 69088716 to 69088727 11 + TSS region transcription start site region 77656
Tssr77657 8 69088733 to 69088744 11 + TSS region transcription start site region 77657
Atp6v1b2 8 69088736 to 69113718 24982 + protein coding gene ATPase, H+ transporting, lysosomal V1 subunit B2
Tssr77658 8 69088753 to 69088796 43 + TSS region transcription start site region 77658