Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:66480554-68550594

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125 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tma16 8 66473118 to 66486530 13412 - protein coding gene translation machinery associated 16
Tssr81454 8 66481336 to 66481341 5 - TSS region transcription start site region 81454
Tssr81455 8 66484015 to 66484025 10 - TSS region transcription start site region 81455
Cpgi20394 8 66486058 to 66486718 660 CpG island CpG island 20394
Tssr81456 8 66486452 to 66486469 17 - TSS region transcription start site region 81456
Tssr81457 8 66486494 to 66486539 45 - TSS region transcription start site region 81457
Tssr81458 8 66486540 to 66486551 11 - TSS region transcription start site region 81458
Tssr81459 8 66490740 to 66490779 39 - TSS region transcription start site region 81459
Tssr77574 8 66491007 to 66491028 21 + TSS region transcription start site region 77574
Gm32568 8 66495059 to 66496946 1887 + lincRNA gene predicted gene, 32568
Cpgi20395 8 66511611 to 66512383 772 CpG island CpG island 20395
Tssr77575 8 66511732 to 66511743 11 + TSS region transcription start site region 77575
Tssr77576 8 66511751 to 66511764 13 + TSS region transcription start site region 77576
Tktl2 8 66511756 to 66518335 6579 + protein coding gene transketolase-like 2
Gm16330 8 66588712 to 66589008 296 - pseudogene predicted gene 16330
Npy5r 8 66679965 to 66688128 8163 - protein coding gene neuropeptide Y receptor Y5
Cpgi20396 8 66687528 to 66688206 678 CpG island CpG island 20396
Tssr77577 8 66697162 to 66697209 47 + TSS region transcription start site region 77577
Npy1r 8 66697192 to 66706792 9600 + protein coding gene neuropeptide Y receptor Y1
Tssr77578 8 66697251 to 66697262 11 + TSS region transcription start site region 77578
Tssr77579 8 66697264 to 66697273 9 + TSS region transcription start site region 77579
Tssr77580 8 66697404 to 66697428 24 + TSS region transcription start site region 77580
Tssr77581 8 66697444 to 66697461 17 + TSS region transcription start site region 77581
Tssr77582 8 66697466 to 66697483 17 + TSS region transcription start site region 77582
Tssr77583 8 66704548 to 66704593 45 + TSS region transcription start site region 77583
Gm45911 8 66780080 to 66795561 15481 + lincRNA gene predicted gene 45911
LOC665443 8 66845797 to 66846592 795 + pseudogene RNA binding motif protein 7 pseudogene
Cpgi20397 8 66860052 to 66860517 465 CpG island CpG island 20397
Tssr77584 8 66860215 to 66860287 72 + TSS region transcription start site region 77584
Naf1 8 66860217 to 66890564 30347 + protein coding gene nuclear assembly factor 1 ribonucleoprotein
Tssr77585 8 66860294 to 66860314 20 + TSS region transcription start site region 77585
Cpgi20398 8 66860813 to 66861503 690 CpG island CpG island 20398
Tssr77586 8 66889235 to 66889248 13 + TSS region transcription start site region 77586
Gm39185 8 66905997 to 66937826 31829 + lincRNA gene predicted gene, 39185
Gm25275 8 66918650 to 66918778 128 - snoRNA gene predicted gene, 25275
Tssr81460 8 66971949 to 66971950 1 - TSS region transcription start site region 81460
Tssr2588 8 67050751 to 67050757 6 + TSS region transcription start site region 2588
Gm7639 8 67053650 to 67054133 483 - pseudogene predicted gene 7639
Gm45827 8 67176771 to 67177787 1016 + lincRNA gene predicted gene 45827
Gm32623 8 67198946 to 67235307 36361 - lncRNA gene predicted gene, 32623
Gm24274 8 67213296 to 67213419 123 - snRNA gene predicted gene, 24274
Gm24677 8 67279082 to 67279231 149 - snoRNA gene predicted gene, 24677
Gm45880 8 67310687 to 67311539 852 + pseudogene predicted gene 45880
Tssr77587 8 67333256 to 67333260 4 + TSS region transcription start site region 77587
Gm10660 8 67352104 to 67365004 12900 - lincRNA gene predicted gene 10660
Nat1 8 67485171 to 67492582 7411 + protein coding gene N-acetyl transferase 1
D8Srb1 8 67493936 to 67494113 177 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 1
Tssr77588 8 67494843 to 67494883 40 + TSS region transcription start site region 77588
Nat2 8 67494858 to 67502584 7726 + protein coding gene N-acetyltransferase 2 (arylamine N-acetyltransferase)
D8Mit71 8 67496627 to 67496764 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 71
D8Srb2 8 67496644 to 67496796 152 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 2
D8Srb3 8 67498724 to 67498900 176 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 3
D8Srb4 8 67503029 to 67503237 208 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 4
Gm9755 8 67514235 to 67515590 1355 - pseudogene predicted pseudogene 9755
Tssr81461 8 67515554 to 67515594 40 - TSS region transcription start site region 81461
Nat3 8 67523854 to 67548627 24773 + protein coding gene N-acetyltransferase 3
Gm36247 8 67584906 to 67585190 284 - pseudogene predicted gene, 36247
Gm44391 8 67629014 to 67629106 92 - miRNA gene predicted gene, 44391
Tssr77589 8 67685467 to 67685483 16 + TSS region transcription start site region 77589
Tssr77590 8 67685509 to 67685526 17 + TSS region transcription start site region 77590
Psd3 8 67689082 to 68206057 516975 - protein coding gene pleckstrin and Sec7 domain containing 3
Tssr81462 8 67693513 to 67693516 3 - TSS region transcription start site region 81462
Tssr2589 8 67696042 to 67696060 18 - TSS region transcription start site region 2589
D8Mit340 8 67740709 to 67740824 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 340
Tssr81463 8 67818218 to 67818269 51 - TSS region transcription start site region 81463
Tssr81464 8 67818284 to 67818320 36 - TSS region transcription start site region 81464
Tssr81465 8 67833874 to 67833877 3 - TSS region transcription start site region 81465
Tssr81466 8 67862069 to 67862073 4 - TSS region transcription start site region 81466
Gm32888 8 67862928 to 67863826 898 - lncRNA gene predicted gene, 32888
Tssr81467 8 67910911 to 67910935 24 - TSS region transcription start site region 81467
Tssr81468 8 67920961 to 67920974 13 - TSS region transcription start site region 81468
Tssr81469 8 67920997 to 67921012 15 - TSS region transcription start site region 81469
Tssr81470 8 67950339 to 67950388 49 - TSS region transcription start site region 81470
Tssr77591 8 67956545 to 67956558 13 + TSS region transcription start site region 77591
Tssr77592 8 67956754 to 67956788 34 + TSS region transcription start site region 77592
Gm15991 8 67956769 to 67978051 21282 + antisense lncRNA gene predicted gene 15991
Tssr81471 8 67974539 to 67974548 9 - TSS region transcription start site region 81471
Tssr81472 8 67974567 to 67974596 29 - TSS region transcription start site region 81472
Tssr77593 8 68009084 to 68009088 4 + TSS region transcription start site region 77593
Gm22018 8 68010340 to 68010470 130 + snoRNA gene predicted gene, 22018
Tssr81473 8 68042687 to 68042702 15 - TSS region transcription start site region 81473
Tssr81474 8 68061373 to 68061376 3 - TSS region transcription start site region 81474
Cpgi20399 8 68061823 to 68063100 1277 CpG island CpG island 20399
Tssr81475 8 68062246 to 68062344 98 - TSS region transcription start site region 81475
Tssr81476 8 68062444 to 68062504 60 - TSS region transcription start site region 81476
Tssr81477 8 68121052 to 68121074 22 - TSS region transcription start site region 81477
Tssr81478 8 68121320 to 68121369 49 - TSS region transcription start site region 81478
Tssr81479 8 68121620 to 68121637 17 - TSS region transcription start site region 81479
D8Mit29 8 68123250 to 68123357 107 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 29
Q 8 68123250 to 94173804 26050554 heritable phenotypic marker quinky
Tssr2590 8 68157563 to 68157566 3 + TSS region transcription start site region 2590
Tssr81480 8 68158489 to 68158516 27 - TSS region transcription start site region 81480
Tssr81481 8 68204915 to 68204919 4 - TSS region transcription start site region 81481
Tssr81482 8 68205742 to 68205748 6 - TSS region transcription start site region 81482
Tssr81483 8 68206012 to 68206026 14 - TSS region transcription start site region 81483
Tssr81484 8 68206043 to 68206060 17 - TSS region transcription start site region 81484
Tssr81485 8 68206061 to 68206083 22 - TSS region transcription start site region 81485
Cpgi20400 8 68206835 to 68207004 169 CpG island CpG island 20400
Tssr81486 8 68212007 to 68212016 9 - TSS region transcription start site region 81486
Tssr81487 8 68212029 to 68212050 21 - TSS region transcription start site region 81487
Tssr81488 8 68212054 to 68212065 11 - TSS region transcription start site region 81488
Tssr81489 8 68212071 to 68212088 17 - TSS region transcription start site region 81489
Tssr81490 8 68212098 to 68212115 17 - TSS region transcription start site region 81490
Tssr81491 8 68212120 to 68212136 16 - TSS region transcription start site region 81491
Tssr81492 8 68212192 to 68212204 12 - TSS region transcription start site region 81492
Tssr81493 8 68212228 to 68212240 12 - TSS region transcription start site region 81493
Tssr81494 8 68212254 to 68212266 12 - TSS region transcription start site region 81494
Gm26659 8 68218173 to 68228413 10240 - lincRNA gene predicted gene, 26659
Char12 8 68269827 to 82600347 14330520 QTL P. chabaudi malaria resistance QTL 12
D8Mit73 8 68269827 to 68270001 174 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 73
Cpgi20401 8 68276565 to 68277564 999 CpG island CpG island 20401
Sh2d4a 8 68276567 to 68347699 71132 + protein coding gene SH2 domain containing 4A
Tssr77594 8 68276691 to 68276705 14 + TSS region transcription start site region 77594
Tssr77595 8 68276713 to 68276752 39 + TSS region transcription start site region 77595
Tssr77596 8 68276803 to 68276815 12 + TSS region transcription start site region 77596
Gm45739 8 68299069 to 68299456 387 + pseudogene predicted gene 45739
Gm19170 8 68316997 to 68318080 1083 - pseudogene predicted gene, 19170
Tssr77597 8 68317711 to 68317717 6 + TSS region transcription start site region 77597
Csgalnact1 8 68356781 to 68735146 378365 - protein coding gene chondroitin sulfate N-acetylgalactosaminyltransferase 1
1700125H03Rik 8 68368459 to 68375710 7251 + antisense lncRNA gene RIKEN cDNA 1700125H03 gene
Tssr77598 8 68368461 to 68368469 8 + TSS region transcription start site region 77598
Gm15656 8 68457148 to 68458681 1533 + antisense lncRNA gene predicted gene 15656
Cpgi20402 8 68461116 to 68461446 330 CpG island CpG island 20402
Tssr2591 8 68533380 to 68533386 6 - TSS region transcription start site region 2591
9530019H20Rik 8 68536034 to 68540260 4226 unclassified non-coding RNA gene RIKEN cDNA 9530019H20 gene