Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:64976452-67996469

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim75 8 64981651 to 64987644 5993 - protein coding gene tripartite motif-containing 75
Cpgi20392 8 64983621 to 64983789 168 CpG island CpG island 20392
Trim60 8 64999307 to 65018584 19277 - protein coding gene tripartite motif-containing 60
Trim61 8 65012987 to 65018523 5536 - protein coding gene tripartite motif-containing 61
Gm45886 8 65014856 to 65037096 22240 - unclassified non-coding RNA gene predicted gene 45886
Gm45448 8 65015592 to 65015800 208 + pseudogene predicted gene 45448
Tssr81436 8 65018579 to 65018588 9 - TSS region transcription start site region 81436
Apela 8 65028417 to 65037336 8919 - protein coding gene apelin receptor early endogenous ligand
Tssr81437 8 65037102 to 65037132 30 - TSS region transcription start site region 81437
Tssr81438 8 65037139 to 65037171 32 - TSS region transcription start site region 81438
Tssr81439 8 65037176 to 65037191 15 - TSS region transcription start site region 81439
Gm39183 8 65040966 to 65079475 38509 + lncRNA gene predicted gene, 39183
Gm10663 8 65075033 to 65077480 2447 + protein coding gene predicted gene 10663
Smim31 8 65085613 to 65129537 43924 - protein coding gene small integral membrane protein 31
Gm45445 8 65092315 to 65092546 231 - pseudogene predicted gene 45445
Gm48810 8 65093590 to 65094043 453 - pseudogene predicted gene, 48810
Gm24333 8 65093831 to 65093914 83 - miRNA gene predicted gene, 24333
Tssr81440 8 65097737 to 65097740 3 - TSS region transcription start site region 81440
Tssr81441 8 65101085 to 65101098 13 - TSS region transcription start site region 81441
Gm39184 8 65104115 to 65109866 5751 + lncRNA gene predicted gene, 39184
Cpgi20393 8 65107974 to 65108230 256 CpG island CpG island 20393
Tssr81442 8 65129317 to 65129328 11 - TSS region transcription start site region 81442
Tssr81443 8 65129334 to 65129343 9 - TSS region transcription start site region 81443
Tssr81444 8 65129374 to 65129383 9 - TSS region transcription start site region 81444
Tssr81445 8 65129409 to 65129424 15 - TSS region transcription start site region 81445
Tssr81446 8 65129445 to 65129463 18 - TSS region transcription start site region 81446
Tssr81447 8 65129465 to 65129482 17 - TSS region transcription start site region 81447
Tssr81448 8 65129524 to 65129540 16 - TSS region transcription start site region 81448
Tssr81449 8 65129554 to 65129572 18 - TSS region transcription start site region 81449
Tssr81450 8 65129581 to 65129599 18 - TSS region transcription start site region 81450
Tssr81451 8 65129613 to 65129620 7 - TSS region transcription start site region 81451
Gm7619 8 65131033 to 65132314 1281 - pseudogene predicted gene 7619
Tssr81452 8 65132398 to 65132411 13 - TSS region transcription start site region 81452
Gm45249 8 65184244 to 65184591 347 + pseudogene predicted gene 45249
Tssr77539 8 65209105 to 65209115 10 + TSS region transcription start site region 77539
Tssr77540 8 65209116 to 65209134 18 + TSS region transcription start site region 77540
Tssr77541 8 65209135 to 65209161 26 + TSS region transcription start site region 77541
Tssr77542 8 65209165 to 65209185 20 + TSS region transcription start site region 77542
Tssr77543 8 65209194 to 65209206 12 + TSS region transcription start site region 77543
Gm7624 8 65278753 to 65279187 434 - pseudogene predicted gene 7624
Vaultrc-ps1 8 65367300 to 65367442 142 + pseudogene vault RNA component pseudogene 1
Gm25403 8 65367301 to 65367443 142 + unclassified non-coding RNA gene predicted gene, 25403
D8Mit30 8 65426351 to 65426511 160 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 30
March1 8 65617922 to 66471637 853715 + protein coding gene membrane-associated ring finger (C3HC4) 1
Tssr77544 8 65618029 to 65618091 62 + TSS region transcription start site region 77544
Tssr77545 8 65639360 to 65639371 11 + TSS region transcription start site region 77545
Tssr77546 8 65639862 to 65639866 4 + TSS region transcription start site region 77546
Gm23515 8 65667595 to 65667701 106 - snRNA gene predicted gene, 23515
Alaa3 8 65792939 to 65793021 82 QTL alopecia areata 3
D8Mit132 8 65792939 to 65793021 82 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 132
Gm15355 8 65817311 to 65817595 284 - pseudogene predicted gene 15355
Tssr77547 8 65820594 to 65820599 5 + TSS region transcription start site region 77547
Gm26123 8 65902057 to 65902191 134 + snoRNA gene predicted gene, 26123
D8Mit131 8 65958678 to 65958804 126 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 131
D8Dcr27 8 65958700 to 65958804 104 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 27
Tssr77548 8 65966638 to 65966645 7 + TSS region transcription start site region 77548
Tssr77549 8 65966659 to 65966664 5 + TSS region transcription start site region 77549
Tssr77550 8 65966677 to 65966695 18 + TSS region transcription start site region 77550
Tssr77551 8 65967166 to 65967191 25 + TSS region transcription start site region 77551
Gm24205 8 66002346 to 66002452 106 - snRNA gene predicted gene, 24205
B230308H17Rik 8 66139015 to 66140711 1696 unclassified gene RIKEN cDNA B230308H17 gene
Tssr2582 8 66330847 to 66330851 4 - TSS region transcription start site region 2582
Gm15354 8 66384623 to 66387535 2912 - antisense lncRNA gene predicted gene 15354
Tssr77552 8 66386188 to 66386214 26 + TSS region transcription start site region 77552
Tssr2583 8 66386260 to 66386271 11 + TSS region transcription start site region 2583
Tssr77553 8 66386292 to 66386308 16 + TSS region transcription start site region 77553
Tssr2584 8 66386337 to 66386346 9 + TSS region transcription start site region 2584
Tssr2585 8 66386396 to 66386414 18 + TSS region transcription start site region 2585
Tssr2586 8 66386420 to 66386432 12 + TSS region transcription start site region 2586
Tssr2587 8 66386449 to 66386462 13 + TSS region transcription start site region 2587
Tssr77554 8 66386809 to 66386820 11 + TSS region transcription start site region 77554
Tssr77555 8 66392143 to 66392193 50 + TSS region transcription start site region 77555
Tssr77556 8 66397236 to 66397263 27 + TSS region transcription start site region 77556
Tssr77557 8 66397677 to 66397682 5 + TSS region transcription start site region 77557
Tssr77558 8 66400506 to 66400528 22 + TSS region transcription start site region 77558
Tssr77559 8 66420364 to 66420376 12 + TSS region transcription start site region 77559
Tssr77560 8 66425842 to 66425871 29 + TSS region transcription start site region 77560
Tssr77561 8 66426860 to 66426901 41 + TSS region transcription start site region 77561
Tssr77562 8 66431370 to 66431372 2 + TSS region transcription start site region 77562
Gm15356 8 66439455 to 66442809 3354 - antisense lncRNA gene predicted gene 15356
Tssr77563 8 66442548 to 66442559 11 + TSS region transcription start site region 77563
Tssr77564 8 66443321 to 66443325 4 + TSS region transcription start site region 77564
Tssr77565 8 66444141 to 66444145 4 + TSS region transcription start site region 77565
Tssr77566 8 66469027 to 66469032 5 + TSS region transcription start site region 77566
Tssr77567 8 66469163 to 66469195 32 + TSS region transcription start site region 77567
Tssr77568 8 66469247 to 66469265 18 + TSS region transcription start site region 77568
Tssr77569 8 66470951 to 66470966 15 + TSS region transcription start site region 77569
Tssr77570 8 66471510 to 66471539 29 + TSS region transcription start site region 77570
Tssr77571 8 66471544 to 66471557 13 + TSS region transcription start site region 77571
Tssr77572 8 66471880 to 66471924 44 + TSS region transcription start site region 77572
Tssr77573 8 66472426 to 66472432 6 + TSS region transcription start site region 77573
Tma16 8 66473118 to 66486530 13412 - protein coding gene translation machinery associated 16
Tssr81453 8 66480383 to 66480417 34 - TSS region transcription start site region 81453
Tssr81454 8 66481336 to 66481341 5 - TSS region transcription start site region 81454
Tssr81455 8 66484015 to 66484025 10 - TSS region transcription start site region 81455
Cpgi20394 8 66486058 to 66486718 660 CpG island CpG island 20394
Tssr81456 8 66486452 to 66486469 17 - TSS region transcription start site region 81456
Tssr81457 8 66486494 to 66486539 45 - TSS region transcription start site region 81457
Tssr81458 8 66486540 to 66486551 11 - TSS region transcription start site region 81458
Tssr81459 8 66490740 to 66490779 39 - TSS region transcription start site region 81459
Tssr77574 8 66491007 to 66491028 21 + TSS region transcription start site region 77574
Gm32568 8 66495059 to 66496946 1887 + lincRNA gene predicted gene, 32568
Cpgi20395 8 66511611 to 66512383 772 CpG island CpG island 20395
Tssr77575 8 66511732 to 66511743 11 + TSS region transcription start site region 77575
Tssr77576 8 66511751 to 66511764 13 + TSS region transcription start site region 77576
Tktl2 8 66511756 to 66518335 6579 + protein coding gene transketolase-like 2
Gm16330 8 66588712 to 66589008 296 - pseudogene predicted gene 16330
Npy5r 8 66679965 to 66688128 8163 - protein coding gene neuropeptide Y receptor Y5
Cpgi20396 8 66687528 to 66688206 678 CpG island CpG island 20396
Tssr77577 8 66697162 to 66697209 47 + TSS region transcription start site region 77577
Npy1r 8 66697192 to 66706792 9600 + protein coding gene neuropeptide Y receptor Y1
Tssr77578 8 66697251 to 66697262 11 + TSS region transcription start site region 77578
Tssr77579 8 66697264 to 66697273 9 + TSS region transcription start site region 77579
Tssr77580 8 66697404 to 66697428 24 + TSS region transcription start site region 77580
Tssr77581 8 66697444 to 66697461 17 + TSS region transcription start site region 77581
Tssr77582 8 66697466 to 66697483 17 + TSS region transcription start site region 77582
Tssr77583 8 66704548 to 66704593 45 + TSS region transcription start site region 77583
Gm45911 8 66780080 to 66795561 15481 + lincRNA gene predicted gene 45911
LOC665443 8 66845797 to 66846592 795 + pseudogene RNA binding motif protein 7 pseudogene
Cpgi20397 8 66860052 to 66860517 465 CpG island CpG island 20397
Tssr77584 8 66860215 to 66860287 72 + TSS region transcription start site region 77584
Naf1 8 66860217 to 66890564 30347 + protein coding gene nuclear assembly factor 1 ribonucleoprotein
Tssr77585 8 66860294 to 66860314 20 + TSS region transcription start site region 77585
Cpgi20398 8 66860813 to 66861503 690 CpG island CpG island 20398
Tssr77586 8 66889235 to 66889248 13 + TSS region transcription start site region 77586
Gm39185 8 66905997 to 66937826 31829 + lincRNA gene predicted gene, 39185
Gm25275 8 66918650 to 66918778 128 - snoRNA gene predicted gene, 25275
Tssr81460 8 66971949 to 66971950 1 - TSS region transcription start site region 81460
Tssr2588 8 67050751 to 67050757 6 + TSS region transcription start site region 2588
Gm7639 8 67053650 to 67054133 483 - pseudogene predicted gene 7639
Gm45827 8 67176771 to 67177787 1016 + lincRNA gene predicted gene 45827
Gm32623 8 67198946 to 67235307 36361 - lncRNA gene predicted gene, 32623
Gm24274 8 67213296 to 67213419 123 - snRNA gene predicted gene, 24274
Gm24677 8 67279082 to 67279231 149 - snoRNA gene predicted gene, 24677
Gm45880 8 67310687 to 67311539 852 + pseudogene predicted gene 45880
Tssr77587 8 67333256 to 67333260 4 + TSS region transcription start site region 77587
Gm10660 8 67352104 to 67365004 12900 - lincRNA gene predicted gene 10660
Nat1 8 67485171 to 67492582 7411 + protein coding gene N-acetyl transferase 1
D8Srb1 8 67493936 to 67494113 177 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 1
Tssr77588 8 67494843 to 67494883 40 + TSS region transcription start site region 77588
Nat2 8 67494858 to 67502584 7726 + protein coding gene N-acetyltransferase 2 (arylamine N-acetyltransferase)
D8Mit71 8 67496627 to 67496764 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 71
D8Srb2 8 67496644 to 67496796 152 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 2
D8Srb3 8 67498724 to 67498900 176 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 3
D8Srb4 8 67503029 to 67503237 208 DNA segment DNA sement, Chr 8, Sotiria R. Boukouvala 4
Gm9755 8 67514235 to 67515590 1355 - pseudogene predicted pseudogene 9755
Tssr81461 8 67515554 to 67515594 40 - TSS region transcription start site region 81461
Nat3 8 67523854 to 67548627 24773 + protein coding gene N-acetyltransferase 3
Gm36247 8 67584906 to 67585190 284 - pseudogene predicted gene, 36247
Gm44391 8 67629014 to 67629106 92 - miRNA gene predicted gene, 44391
Tssr77589 8 67685467 to 67685483 16 + TSS region transcription start site region 77589
Tssr77590 8 67685509 to 67685526 17 + TSS region transcription start site region 77590
Psd3 8 67689082 to 68206057 516975 - protein coding gene pleckstrin and Sec7 domain containing 3
Tssr81462 8 67693513 to 67693516 3 - TSS region transcription start site region 81462
Tssr2589 8 67696042 to 67696060 18 - TSS region transcription start site region 2589
D8Mit340 8 67740709 to 67740824 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 340
Tssr81463 8 67818218 to 67818269 51 - TSS region transcription start site region 81463
Tssr81464 8 67818284 to 67818320 36 - TSS region transcription start site region 81464
Tssr81465 8 67833874 to 67833877 3 - TSS region transcription start site region 81465
Tssr81466 8 67862069 to 67862073 4 - TSS region transcription start site region 81466
Gm32888 8 67862928 to 67863826 898 - lncRNA gene predicted gene, 32888
Tssr81467 8 67910911 to 67910935 24 - TSS region transcription start site region 81467
Tssr81468 8 67920961 to 67920974 13 - TSS region transcription start site region 81468
Tssr81469 8 67920997 to 67921012 15 - TSS region transcription start site region 81469
Tssr81470 8 67950339 to 67950388 49 - TSS region transcription start site region 81470
Tssr77591 8 67956545 to 67956558 13 + TSS region transcription start site region 77591
Tssr77592 8 67956754 to 67956788 34 + TSS region transcription start site region 77592
Gm15991 8 67956769 to 67978051 21282 + antisense lncRNA gene predicted gene 15991
Tssr81471 8 67974539 to 67974548 9 - TSS region transcription start site region 81471
Tssr81472 8 67974567 to 67974596 29 - TSS region transcription start site region 81472