Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:61387715-61587751

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
5730405A17Rik 8 61384937 to 61429030 44093 - lncRNA gene RIKEN cDNA 5730405A17 gene
Tssr77487 8 61395401 to 61395405 4 + TSS region transcription start site region 77487
D8Mit358 8 61417910 to 61418029 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 358
D8Dcr25 8 61418236 to 61418332 96 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 25
Tssr81373 8 61450520 to 61450524 4 - TSS region transcription start site region 81373
Tssr77488 8 61479414 to 61479422 8 + TSS region transcription start site region 77488
Tssr81374 8 61480495 to 61480522 27 - TSS region transcription start site region 81374
Cpgi20378 8 61487695 to 61488170 475 CpG island CpG island 20378
Tssr77489 8 61487715 to 61487751 36 + TSS region transcription start site region 77489
Cbr4 8 61487734 to 61503500 15766 + protein coding gene carbonyl reductase 4
E130110O22Rik 8 61504964 to 61506680 1716 unclassified gene RIKEN cDNA E130110O22 gene
Palld 8 61511433 to 61902690 391257 - protein coding gene palladin, cytoskeletal associated protein
Tssr81375 8 61516076 to 61516102 26 - TSS region transcription start site region 81375
Tssr81376 8 61533533 to 61533554 21 - TSS region transcription start site region 81376
Tssr81377 8 61533561 to 61533613 52 - TSS region transcription start site region 81377
Cpgi20379 8 61549481 to 61550496 1015 CpG island CpG island 20379
Tssr81378 8 61549786 to 61549822 36 - TSS region transcription start site region 81378
Tssr81379 8 61550086 to 61550097 11 - TSS region transcription start site region 81379
Tssr81380 8 61550100 to 61550128 28 - TSS region transcription start site region 81380
Tssr81381 8 61574145 to 61574149 4 - TSS region transcription start site region 81381