Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:61230100-61870128

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
Tssr77482 8 61239391 to 61239394 3 + TSS region transcription start site region 77482
Cpgi20376 8 61243008 to 61243183 175 CpG island CpG island 20376
Tssr77483 8 61280942 to 61280947 5 + TSS region transcription start site region 77483
1700001D01Rik 8 61281522 to 61288872 7350 - antisense lncRNA gene RIKEN cDNA 1700001D01 gene
Tssr81371 8 61289328 to 61289329 1 - TSS region transcription start site region 81371
Tssr77484 8 61293779 to 61293783 4 + TSS region transcription start site region 77484
Iba3 8 61294880 to 61295025 145 QTL induction of brown adipocytes 3
D8Mit128 8 61294880 to 61295025 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 128
Gm40499 8 61307663 to 61313426 5763 + lncRNA gene predicted gene, 40499
D8Mit160 8 61308418 to 61308564 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 160
Tssr77485 8 61327947 to 61327963 16 + TSS region transcription start site region 77485
Tssr77486 8 61329358 to 61329376 18 + TSS region transcription start site region 77486
Cpgi20377 8 61349455 to 61349772 317 CpG island CpG island 20377
Gm10015 8 61364019 to 61364483 464 - pseudogene predicted gene 10015
Gm7432 8 61380509 to 61381387 878 - pseudogene predicted gene 7432
Tssr81372 8 61381418 to 61381420 2 - TSS region transcription start site region 81372
5730405A17Rik 8 61384937 to 61429030 44093 - lncRNA gene RIKEN cDNA 5730405A17 gene
Tssr77487 8 61395401 to 61395405 4 + TSS region transcription start site region 77487
D8Mit358 8 61417910 to 61418029 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 358
D8Dcr25 8 61418236 to 61418332 96 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 25
Tssr81373 8 61450520 to 61450524 4 - TSS region transcription start site region 81373
Tssr77488 8 61479414 to 61479422 8 + TSS region transcription start site region 77488
Tssr81374 8 61480495 to 61480522 27 - TSS region transcription start site region 81374
Cpgi20378 8 61487695 to 61488170 475 CpG island CpG island 20378
Tssr77489 8 61487715 to 61487751 36 + TSS region transcription start site region 77489
Cbr4 8 61487734 to 61503500 15766 + protein coding gene carbonyl reductase 4
E130110O22Rik 8 61504964 to 61506680 1716 unclassified gene RIKEN cDNA E130110O22 gene
Palld 8 61511433 to 61902690 391257 - protein coding gene palladin, cytoskeletal associated protein
Tssr81375 8 61516076 to 61516102 26 - TSS region transcription start site region 81375
Tssr81376 8 61533533 to 61533554 21 - TSS region transcription start site region 81376
Tssr81377 8 61533561 to 61533613 52 - TSS region transcription start site region 81377
Cpgi20379 8 61549481 to 61550496 1015 CpG island CpG island 20379
Tssr81378 8 61549786 to 61549822 36 - TSS region transcription start site region 81378
Tssr81379 8 61550086 to 61550097 11 - TSS region transcription start site region 81379
Tssr81380 8 61550100 to 61550128 28 - TSS region transcription start site region 81380
Tssr81381 8 61574145 to 61574149 4 - TSS region transcription start site region 81381
Cpgi20380 8 61590811 to 61591325 514 CpG island CpG island 20380
Tssr81382 8 61591130 to 61591148 18 - TSS region transcription start site region 81382
Tssr81383 8 61591181 to 61591205 24 - TSS region transcription start site region 81383
Tssr81384 8 61591213 to 61591231 18 - TSS region transcription start site region 81384
Tssr77490 8 61600281 to 61600283 2 + TSS region transcription start site region 77490
Tssr81385 8 61603005 to 61603044 39 - TSS region transcription start site region 81385
Tssr77491 8 61609408 to 61609414 6 + TSS region transcription start site region 77491
Tssr2577 8 61610045 to 61610046 1 + TSS region transcription start site region 2577
Tssr81386 8 61612410 to 61612413 3 - TSS region transcription start site region 81386
Gm35254 8 61627808 to 61631325 3517 + lncRNA gene predicted gene, 35254
Gm3014 8 61662002 to 61663992 1990 unclassified gene predicted gene 3014
Tssr81387 8 61663755 to 61663770 15 - TSS region transcription start site region 81387
Tssr81388 8 61663797 to 61663845 48 - TSS region transcription start site region 81388
Tssr77492 8 61687363 to 61687376 13 + TSS region transcription start site region 77492
Tssr81389 8 61698031 to 61698034 3 - TSS region transcription start site region 81389
Tssr2578 8 61700318 to 61700333 15 - TSS region transcription start site region 2578
Tssr81390 8 61700440 to 61700456 16 - TSS region transcription start site region 81390
Tssr81391 8 61703173 to 61703187 14 - TSS region transcription start site region 81391
Tssr77493 8 61713581 to 61713592 11 + TSS region transcription start site region 77493
Tssr2579 8 61715530 to 61715544 14 + TSS region transcription start site region 2579
Tssr81392 8 61732349 to 61732392 43 - TSS region transcription start site region 81392
Tssr77494 8 61742549 to 61742578 29 + TSS region transcription start site region 77494
Cpgi20381 8 61759630 to 61760329 699 CpG island CpG island 20381
Tssr81393 8 61760020 to 61760036 16 - TSS region transcription start site region 81393
Tssr81394 8 61760038 to 61760061 23 - TSS region transcription start site region 81394
Tssr81395 8 61760067 to 61760103 36 - TSS region transcription start site region 81395
Tssr81396 8 61760419 to 61760422 3 - TSS region transcription start site region 81396
Tssr81397 8 61768835 to 61768840 5 - TSS region transcription start site region 81397
Tssr81398 8 61785149 to 61785152 3 - TSS region transcription start site region 81398
Gm18066 8 61819743 to 61821516 1773 - pseudogene predicted gene, 18066
Tssr81399 8 61869653 to 61869656 3 - TSS region transcription start site region 81399