Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:61123872-61496071

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nek1 8 60993195 to 61131346 138151 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 1
Gm16178 8 61117605 to 61194648 77043 - antisense lncRNA gene predicted gene 16178
Tssr2576 8 61130535 to 61130539 4 + TSS region transcription start site region 2576
Acigg8 8 61221786 to 75127057 13905271 QTL anti COL7 IgG2b antibody 8
Cpgi20375 8 61223667 to 61225033 1366 CpG island CpG island 20375
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
Tssr77477 8 61224162 to 61224174 12 + TSS region transcription start site region 77477
Tssr77478 8 61224187 to 61224211 24 + TSS region transcription start site region 77478
Tssr77479 8 61224220 to 61224251 31 + TSS region transcription start site region 77479
Tssr77480 8 61224258 to 61224275 17 + TSS region transcription start site region 77480
Tssr77481 8 61225844 to 61225857 13 + TSS region transcription start site region 77481
Tssr77482 8 61239391 to 61239394 3 + TSS region transcription start site region 77482
Cpgi20376 8 61243008 to 61243183 175 CpG island CpG island 20376
Tssr77483 8 61280942 to 61280947 5 + TSS region transcription start site region 77483
1700001D01Rik 8 61281522 to 61288872 7350 - antisense lncRNA gene RIKEN cDNA 1700001D01 gene
Tssr81371 8 61289328 to 61289329 1 - TSS region transcription start site region 81371
Tssr77484 8 61293779 to 61293783 4 + TSS region transcription start site region 77484
D8Mit128 8 61294880 to 61295025 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 128
Iba3 8 61294880 to 61295025 145 QTL induction of brown adipocytes 3
Gm40499 8 61307663 to 61313426 5763 + lncRNA gene predicted gene, 40499
D8Mit160 8 61308418 to 61308564 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 160
Tssr77485 8 61327947 to 61327963 16 + TSS region transcription start site region 77485
Tssr77486 8 61329358 to 61329376 18 + TSS region transcription start site region 77486
Cpgi20377 8 61349455 to 61349772 317 CpG island CpG island 20377
Gm10015 8 61364019 to 61364483 464 - pseudogene predicted gene 10015
Gm7432 8 61380509 to 61381387 878 - pseudogene predicted gene 7432
Tssr81372 8 61381418 to 61381420 2 - TSS region transcription start site region 81372
5730405A17Rik 8 61384937 to 61429030 44093 - lncRNA gene RIKEN cDNA 5730405A17 gene
Tssr77487 8 61395401 to 61395405 4 + TSS region transcription start site region 77487
D8Mit358 8 61417910 to 61418029 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 358
D8Dcr25 8 61418236 to 61418332 96 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 25
Tssr81373 8 61450520 to 61450524 4 - TSS region transcription start site region 81373
Tssr77488 8 61479414 to 61479422 8 + TSS region transcription start site region 77488
Tssr81374 8 61480495 to 61480522 27 - TSS region transcription start site region 81374
Cpgi20378 8 61487695 to 61488170 475 CpG island CpG island 20378
Tssr77489 8 61487715 to 61487751 36 + TSS region transcription start site region 77489
Cbr4 8 61487734 to 61503500 15766 + protein coding gene carbonyl reductase 4