Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:61112808-62146325

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nek1 8 60993195 to 61131346 138151 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 1
Gm16178 8 61117605 to 61194648 77043 - antisense lncRNA gene predicted gene 16178
Tssr2576 8 61130535 to 61130539 4 + TSS region transcription start site region 2576
Acigg8 8 61221786 to 75127057 13905271 QTL anti COL7 IgG2b antibody 8
Cpgi20375 8 61223667 to 61225033 1366 CpG island CpG island 20375
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
Tssr77477 8 61224162 to 61224174 12 + TSS region transcription start site region 77477
Tssr77478 8 61224187 to 61224211 24 + TSS region transcription start site region 77478
Tssr77479 8 61224220 to 61224251 31 + TSS region transcription start site region 77479
Tssr77480 8 61224258 to 61224275 17 + TSS region transcription start site region 77480
Tssr77481 8 61225844 to 61225857 13 + TSS region transcription start site region 77481
Tssr77482 8 61239391 to 61239394 3 + TSS region transcription start site region 77482
Cpgi20376 8 61243008 to 61243183 175 CpG island CpG island 20376
Tssr77483 8 61280942 to 61280947 5 + TSS region transcription start site region 77483
1700001D01Rik 8 61281522 to 61288872 7350 - antisense lncRNA gene RIKEN cDNA 1700001D01 gene
Tssr81371 8 61289328 to 61289329 1 - TSS region transcription start site region 81371
Tssr77484 8 61293779 to 61293783 4 + TSS region transcription start site region 77484
Iba3 8 61294880 to 61295025 145 QTL induction of brown adipocytes 3
D8Mit128 8 61294880 to 61295025 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 128
Gm40499 8 61307663 to 61313426 5763 + lncRNA gene predicted gene, 40499
D8Mit160 8 61308418 to 61308564 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 160
Tssr77485 8 61327947 to 61327963 16 + TSS region transcription start site region 77485
Tssr77486 8 61329358 to 61329376 18 + TSS region transcription start site region 77486
Cpgi20377 8 61349455 to 61349772 317 CpG island CpG island 20377
Gm10015 8 61364019 to 61364483 464 - pseudogene predicted gene 10015
Gm7432 8 61380509 to 61381387 878 - pseudogene predicted gene 7432
Tssr81372 8 61381418 to 61381420 2 - TSS region transcription start site region 81372
5730405A17Rik 8 61384937 to 61429030 44093 - lncRNA gene RIKEN cDNA 5730405A17 gene
Tssr77487 8 61395401 to 61395405 4 + TSS region transcription start site region 77487
D8Mit358 8 61417910 to 61418029 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 358
D8Dcr25 8 61418236 to 61418332 96 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 25
Tssr81373 8 61450520 to 61450524 4 - TSS region transcription start site region 81373
Tssr77488 8 61479414 to 61479422 8 + TSS region transcription start site region 77488
Tssr81374 8 61480495 to 61480522 27 - TSS region transcription start site region 81374
Cpgi20378 8 61487695 to 61488170 475 CpG island CpG island 20378
Tssr77489 8 61487715 to 61487751 36 + TSS region transcription start site region 77489
Cbr4 8 61487734 to 61503500 15766 + protein coding gene carbonyl reductase 4
E130110O22Rik 8 61504964 to 61506680 1716 unclassified gene RIKEN cDNA E130110O22 gene
Palld 8 61511433 to 61902690 391257 - protein coding gene palladin, cytoskeletal associated protein
Tssr81375 8 61516076 to 61516102 26 - TSS region transcription start site region 81375
Tssr81376 8 61533533 to 61533554 21 - TSS region transcription start site region 81376
Tssr81377 8 61533561 to 61533613 52 - TSS region transcription start site region 81377
Cpgi20379 8 61549481 to 61550496 1015 CpG island CpG island 20379
Tssr81378 8 61549786 to 61549822 36 - TSS region transcription start site region 81378
Tssr81379 8 61550086 to 61550097 11 - TSS region transcription start site region 81379
Tssr81380 8 61550100 to 61550128 28 - TSS region transcription start site region 81380
Tssr81381 8 61574145 to 61574149 4 - TSS region transcription start site region 81381
Cpgi20380 8 61590811 to 61591325 514 CpG island CpG island 20380
Tssr81382 8 61591130 to 61591148 18 - TSS region transcription start site region 81382
Tssr81383 8 61591181 to 61591205 24 - TSS region transcription start site region 81383
Tssr81384 8 61591213 to 61591231 18 - TSS region transcription start site region 81384
Tssr77490 8 61600281 to 61600283 2 + TSS region transcription start site region 77490
Tssr81385 8 61603005 to 61603044 39 - TSS region transcription start site region 81385
Tssr77491 8 61609408 to 61609414 6 + TSS region transcription start site region 77491
Tssr2577 8 61610045 to 61610046 1 + TSS region transcription start site region 2577
Tssr81386 8 61612410 to 61612413 3 - TSS region transcription start site region 81386
Gm35254 8 61627808 to 61631325 3517 + lncRNA gene predicted gene, 35254
Gm3014 8 61662002 to 61663992 1990 unclassified gene predicted gene 3014
Tssr81387 8 61663755 to 61663770 15 - TSS region transcription start site region 81387
Tssr81388 8 61663797 to 61663845 48 - TSS region transcription start site region 81388
Tssr77492 8 61687363 to 61687376 13 + TSS region transcription start site region 77492
Tssr81389 8 61698031 to 61698034 3 - TSS region transcription start site region 81389
Tssr2578 8 61700318 to 61700333 15 - TSS region transcription start site region 2578
Tssr81390 8 61700440 to 61700456 16 - TSS region transcription start site region 81390
Tssr81391 8 61703173 to 61703187 14 - TSS region transcription start site region 81391
Tssr77493 8 61713581 to 61713592 11 + TSS region transcription start site region 77493
Tssr2579 8 61715530 to 61715544 14 + TSS region transcription start site region 2579
Tssr81392 8 61732349 to 61732392 43 - TSS region transcription start site region 81392
Tssr77494 8 61742549 to 61742578 29 + TSS region transcription start site region 77494
Cpgi20381 8 61759630 to 61760329 699 CpG island CpG island 20381
Tssr81393 8 61760020 to 61760036 16 - TSS region transcription start site region 81393
Tssr81394 8 61760038 to 61760061 23 - TSS region transcription start site region 81394
Tssr81395 8 61760067 to 61760103 36 - TSS region transcription start site region 81395
Tssr81396 8 61760419 to 61760422 3 - TSS region transcription start site region 81396
Tssr81397 8 61768835 to 61768840 5 - TSS region transcription start site region 81397
Tssr81398 8 61785149 to 61785152 3 - TSS region transcription start site region 81398
Gm18066 8 61819743 to 61821516 1773 - pseudogene predicted gene, 18066
Tssr81399 8 61869653 to 61869656 3 - TSS region transcription start site region 81399
Tssr81400 8 61877560 to 61877591 31 - TSS region transcription start site region 81400
D8Ertd252e 8 61878608 to 61878825 217 DNA segment DNA segment, Chr 8, ERATO Doi 252, expressed
Tssr81401 8 61902673 to 61902713 40 - TSS region transcription start site region 81401
Tssr2580 8 61902736 to 61902741 5 - TSS region transcription start site region 2580
Tssr2581 8 61902751 to 61902762 11 - TSS region transcription start site region 2581
Tssr77495 8 61909532 to 61909558 26 + TSS region transcription start site region 77495
4930512H18Rik 8 61912666 to 61924768 12102 + antisense lncRNA gene RIKEN cDNA 4930512H18 gene
Tssr77496 8 61913059 to 61913063 4 + TSS region transcription start site region 77496
Gm45418 8 61921746 to 61928028 6282 - bidirectional promoter lncRNA gene predicted gene 45418
Tssr81402 8 61927967 to 61928044 77 - TSS region transcription start site region 81402
Ddx60 8 61928064 to 62037704 109640 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
Tssr77497 8 61928081 to 61928094 13 + TSS region transcription start site region 77497
Cpgi20382 8 61928109 to 61928265 156 CpG island CpG island 20382
Tssr77498 8 61928113 to 61928127 14 + TSS region transcription start site region 77498
Tssr77499 8 61931099 to 61931119 20 + TSS region transcription start site region 77499
Tssr77500 8 61931584 to 61931596 12 + TSS region transcription start site region 77500
Tssr77501 8 61933957 to 61933972 15 + TSS region transcription start site region 77501
Tssr77502 8 61935071 to 61935098 27 + TSS region transcription start site region 77502
Tssr77503 8 61936072 to 61936085 13 + TSS region transcription start site region 77503
Tssr77504 8 61936151 to 61936164 13 + TSS region transcription start site region 77504
Tssr77505 8 61936255 to 61936286 31 + TSS region transcription start site region 77505
Tssr77506 8 61938190 to 61938212 22 + TSS region transcription start site region 77506
Tssr77507 8 61942777 to 61942787 10 + TSS region transcription start site region 77507
Tssr77508 8 61947404 to 61947416 12 + TSS region transcription start site region 77508
Tssr77509 8 61947432 to 61947444 12 + TSS region transcription start site region 77509
Tssr77510 8 61947543 to 61947555 12 + TSS region transcription start site region 77510
Tssr77511 8 61947631 to 61947646 15 + TSS region transcription start site region 77511
Tssr77512 8 61947687 to 61947703 16 + TSS region transcription start site region 77512
Tssr77513 8 61951820 to 61951823 3 + TSS region transcription start site region 77513
Tssr77514 8 61952010 to 61952047 37 + TSS region transcription start site region 77514
Tssr77515 8 61963644 to 61963654 10 + TSS region transcription start site region 77515
Tssr77516 8 61967490 to 61967514 24 + TSS region transcription start site region 77516
Tssr77517 8 61976251 to 61976266 15 + TSS region transcription start site region 77517
Tssr77518 8 61976379 to 61976394 15 + TSS region transcription start site region 77518
Tssr77519 8 61976820 to 61976833 13 + TSS region transcription start site region 77519
Tssr77520 8 61976850 to 61976868 18 + TSS region transcription start site region 77520
Tssr77521 8 61976990 to 61977002 12 + TSS region transcription start site region 77521
Tssr77522 8 61977571 to 61977586 15 + TSS region transcription start site region 77522
Tssr77523 8 61984001 to 61984004 3 + TSS region transcription start site region 77523
Tssr77524 8 61984714 to 61984720 6 + TSS region transcription start site region 77524
Tssr77525 8 61986903 to 61986913 10 + TSS region transcription start site region 77525
Tssr77526 8 61988460 to 61988509 49 + TSS region transcription start site region 77526
Tssr77527 8 61995839 to 61995843 4 + TSS region transcription start site region 77527
Tssr77528 8 62002102 to 62002107 5 + TSS region transcription start site region 77528
Tssr77529 8 62014424 to 62014436 12 + TSS region transcription start site region 77529
Tssr77530 8 62017134 to 62017155 21 + TSS region transcription start site region 77530
Tssr77531 8 62025046 to 62025057 11 + TSS region transcription start site region 77531
Anxa10 8 62057042 to 62123150 66108 - protein coding gene annexin A10
Tssr81403 8 62123106 to 62123123 17 - TSS region transcription start site region 81403
Tssr81404 8 62123129 to 62123138 9 - TSS region transcription start site region 81404
Tssr81405 8 62123144 to 62123155 11 - TSS region transcription start site region 81405
Tssr81406 8 62123186 to 62123200 14 - TSS region transcription start site region 81406
Tssr81407 8 62123304 to 62123328 24 - TSS region transcription start site region 81407