Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:60973872-61646071

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clcn3 8 60910389 to 60983300 72911 - protein coding gene chloride channel, voltage-sensitive 3
Cpgi20373 8 60982646 to 60983929 1283 CpG island CpG island 20373
Tssr81370 8 60983215 to 60983319 104 - TSS region transcription start site region 81370
B230317F23Rik 8 60983437 to 60985908 2471 + lincRNA gene RIKEN cDNA B230317F23 gene
Cpgi20374 8 60992725 to 60993818 1093 CpG island CpG island 20374
Tssr77475 8 60993189 to 60993247 58 + TSS region transcription start site region 77475
Nek1 8 60993195 to 61131346 138151 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 1
Tssr77476 8 60993553 to 60993568 15 + TSS region transcription start site region 77476
Gm45484 8 61024131 to 61025271 1140 + unclassified gene predicted gene 45484
Gm45809 8 61050049 to 61053942 3893 + unclassified gene predicted gene 45809
Gm45483 8 61075365 to 61077046 1681 + unclassified gene predicted gene 45483
D8Ertd124e 8 61091165 to 61091379 214 DNA segment DNA segment, Chr 8, ERATO Doi 124, expressed
Gm16179 8 61112130 to 61112502 372 - pseudogene predicted gene 16179
Gm16178 8 61117605 to 61194648 77043 - antisense lncRNA gene predicted gene 16178
Tssr2576 8 61130535 to 61130539 4 + TSS region transcription start site region 2576
Acigg8 8 61221786 to 75127057 13905271 QTL anti COL7 IgG2b antibody 8
Cpgi20375 8 61223667 to 61225033 1366 CpG island CpG island 20375
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
Tssr77477 8 61224162 to 61224174 12 + TSS region transcription start site region 77477
Tssr77478 8 61224187 to 61224211 24 + TSS region transcription start site region 77478
Tssr77479 8 61224220 to 61224251 31 + TSS region transcription start site region 77479
Tssr77480 8 61224258 to 61224275 17 + TSS region transcription start site region 77480
Tssr77481 8 61225844 to 61225857 13 + TSS region transcription start site region 77481
Tssr77482 8 61239391 to 61239394 3 + TSS region transcription start site region 77482
Cpgi20376 8 61243008 to 61243183 175 CpG island CpG island 20376
Tssr77483 8 61280942 to 61280947 5 + TSS region transcription start site region 77483
1700001D01Rik 8 61281522 to 61288872 7350 - antisense lncRNA gene RIKEN cDNA 1700001D01 gene
Tssr81371 8 61289328 to 61289329 1 - TSS region transcription start site region 81371
Tssr77484 8 61293779 to 61293783 4 + TSS region transcription start site region 77484
D8Mit128 8 61294880 to 61295025 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 128
Iba3 8 61294880 to 61295025 145 QTL induction of brown adipocytes 3
Gm40499 8 61307663 to 61313426 5763 + lncRNA gene predicted gene, 40499
D8Mit160 8 61308418 to 61308564 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 160
Tssr77485 8 61327947 to 61327963 16 + TSS region transcription start site region 77485
Tssr77486 8 61329358 to 61329376 18 + TSS region transcription start site region 77486
Cpgi20377 8 61349455 to 61349772 317 CpG island CpG island 20377
Gm10015 8 61364019 to 61364483 464 - pseudogene predicted gene 10015
Gm7432 8 61380509 to 61381387 878 - pseudogene predicted gene 7432
Tssr81372 8 61381418 to 61381420 2 - TSS region transcription start site region 81372
5730405A17Rik 8 61384937 to 61429030 44093 - lncRNA gene RIKEN cDNA 5730405A17 gene
Tssr77487 8 61395401 to 61395405 4 + TSS region transcription start site region 77487
D8Mit358 8 61417910 to 61418029 119 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 358
D8Dcr25 8 61418236 to 61418332 96 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 25
Tssr81373 8 61450520 to 61450524 4 - TSS region transcription start site region 81373
Tssr77488 8 61479414 to 61479422 8 + TSS region transcription start site region 77488
Tssr81374 8 61480495 to 61480522 27 - TSS region transcription start site region 81374
Cpgi20378 8 61487695 to 61488170 475 CpG island CpG island 20378
Tssr77489 8 61487715 to 61487751 36 + TSS region transcription start site region 77489
Cbr4 8 61487734 to 61503500 15766 + protein coding gene carbonyl reductase 4
E130110O22Rik 8 61504964 to 61506680 1716 unclassified gene RIKEN cDNA E130110O22 gene
Palld 8 61511433 to 61902690 391257 - protein coding gene palladin, cytoskeletal associated protein
Tssr81375 8 61516076 to 61516102 26 - TSS region transcription start site region 81375
Tssr81376 8 61533533 to 61533554 21 - TSS region transcription start site region 81376
Tssr81377 8 61533561 to 61533613 52 - TSS region transcription start site region 81377
Cpgi20379 8 61549481 to 61550496 1015 CpG island CpG island 20379
Tssr81378 8 61549786 to 61549822 36 - TSS region transcription start site region 81378
Tssr81379 8 61550086 to 61550097 11 - TSS region transcription start site region 81379
Tssr81380 8 61550100 to 61550128 28 - TSS region transcription start site region 81380
Tssr81381 8 61574145 to 61574149 4 - TSS region transcription start site region 81381
Cpgi20380 8 61590811 to 61591325 514 CpG island CpG island 20380
Tssr81382 8 61591130 to 61591148 18 - TSS region transcription start site region 81382
Tssr81383 8 61591181 to 61591205 24 - TSS region transcription start site region 81383
Tssr81384 8 61591213 to 61591231 18 - TSS region transcription start site region 81384
Tssr77490 8 61600281 to 61600283 2 + TSS region transcription start site region 77490
Tssr81385 8 61603005 to 61603044 39 - TSS region transcription start site region 81385
Tssr77491 8 61609408 to 61609414 6 + TSS region transcription start site region 77491
Tssr2577 8 61610045 to 61610046 1 + TSS region transcription start site region 2577
Tssr81386 8 61612410 to 61612413 3 - TSS region transcription start site region 81386
Gm35254 8 61627808 to 61631325 3517 + lncRNA gene predicted gene, 35254