Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:5948222-8908328

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D8Mit149 8 5958595 to 5958712 117 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 149
Gm2734 8 5993984 to 5994723 739 - pseudogene predicted gene 2734
Gm44843 8 6034867 to 6036262 1395 + unclassified gene predicted gene 44843
Gm44842 8 6218668 to 6222039 3371 + unclassified gene predicted gene 44842
Gm24288 8 6223819 to 6223962 143 - snoRNA gene predicted gene, 24288
Gm44844 8 6437744 to 6438079 335 + pseudogene predicted gene 44844
Gm44909 8 6830814 to 6830978 164 - pseudogene predicted gene 44909
Gm7506 8 7001941 to 7002755 814 - pseudogene predicted gene 7506
Tssr80292 8 7002766 to 7002788 22 - TSS region transcription start site region 80292
Gm44911 8 7040157 to 7041218 1061 + pseudogene predicted gene 44911
Gm44910 8 7132569 to 7132964 395 - pseudogene predicted gene 44910
D8Mit58 8 7162499 to 7162664 165 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 58
Gm44908 8 7231234 to 7231499 265 + pseudogene predicted gene 44908
Gm17215 8 7381015 to 7428569 47554 + lincRNA gene predicted gene 17215
Gm26427 8 7428222 to 7428328 106 - snRNA gene predicted gene, 26427
Gm30954 8 7468669 to 7580205 111536 - lincRNA gene predicted gene, 30954
Gm27585 8 7521636 to 7521834 198 + unclassified non-coding RNA gene predicted gene, 27585
Gm27545 8 7525256 to 7525457 201 + unclassified non-coding RNA gene predicted gene, 27545
Tssr80293 8 7580203 to 7580211 8 - TSS region transcription start site region 80293
Tssr80294 8 7580230 to 7580241 11 - TSS region transcription start site region 80294
Gm25169 8 7638764 to 7638892 128 + snoRNA gene predicted gene, 25169
Scvg1 8 7701082 to 7701082 0 QTL subcutaneous vessel growth QTL 1
D8Mit333 8 7816371 to 7816451 80 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 333
Gm28262 8 7855847 to 7863406 7559 + unclassified non-coding RNA gene predicted gene 28262
Gm45160 8 7985368 to 7988466 3098 + unclassified gene predicted gene 45160
Tssr80295 8 8021158 to 8021161 3 - TSS region transcription start site region 80295
Gm31401 8 8082540 to 8093215 10675 + lincRNA gene predicted gene, 31401
Tssr80296 8 8226463 to 8226473 10 - TSS region transcription start site region 80296
Gm45076 8 8334081 to 8336213 2132 - lincRNA gene predicted gene 45076
Tssr76153 8 8335065 to 8335080 15 + TSS region transcription start site region 76153
A630009H07Rik 8 8335077 to 8342428 7351 + lincRNA gene RIKEN cDNA A630009H07 gene
Gm31343 8 8377090 to 8391702 14612 + lincRNA gene predicted gene, 31343
Gm31135 8 8436606 to 8484728 48122 - lincRNA gene predicted gene, 31135
Gm2448 8 8454871 to 8455429 558 - pseudogene predicted gene 2448
Tssr80297 8 8457435 to 8457437 2 - TSS region transcription start site region 80297
Tssr80298 8 8484701 to 8484731 30 - TSS region transcription start site region 80298
Tssr80299 8 8484736 to 8484750 14 - TSS region transcription start site region 80299
D530014G21Rik 8 8488302 to 8495535 7233 + lincRNA gene RIKEN cDNA D530014G21 gene
Tssr76154 8 8533654 to 8533663 9 + TSS region transcription start site region 76154
Gm31463 8 8576522 to 8580342 3820 + lincRNA gene predicted gene, 31463
Gm45075 8 8612264 to 8615862 3598 + lincRNA gene predicted gene 45075
Efnb2 8 8617434 to 8661242 43808 - protein coding gene ephrin B2
Tssr80300 8 8617553 to 8617558 5 - TSS region transcription start site region 80300
Tssr80301 8 8618705 to 8618709 4 - TSS region transcription start site region 80301
Cpgi20060 8 8620557 to 8621088 531 CpG island CpG island 20060
Tssr80302 8 8621291 to 8621320 29 - TSS region transcription start site region 80302
E230020D15Rik 8 8629175 to 8635073 5898 - unclassified gene RIKEN cDNA E230020D15 gene
Gm45074 8 8637966 to 8639205 1239 - unclassified gene predicted gene 45074
Gm45073 8 8642766 to 8647012 4246 - unclassified gene predicted gene 45073
Tssr80303 8 8657739 to 8657744 5 - TSS region transcription start site region 80303
Cpgi20061 8 8659450 to 8662099 2649 CpG island CpG island 20061
Tssr80304 8 8661232 to 8661249 17 - TSS region transcription start site region 80304
Tssr76155 8 8661794 to 8661806 12 + TSS region transcription start site region 76155
4921522P10Rik 8 8661801 to 8664728 2927 + lincRNA gene RIKEN cDNA 4921522P10 gene
Tssr76156 8 8661807 to 8661817 10 + TSS region transcription start site region 76156
Tssr76157 8 8661819 to 8661826 7 + TSS region transcription start site region 76157
Arglu1 8 8666297 to 8690549 24252 - protein coding gene arginine and glutamate rich 1
Tssr76158 8 8666573 to 8666579 6 + TSS region transcription start site region 76158
Tssr80305 8 8667128 to 8667136 8 - TSS region transcription start site region 80305
Tssr80306 8 8683091 to 8683099 8 - TSS region transcription start site region 80306
Tssr76159 8 8683856 to 8683938 82 + TSS region transcription start site region 76159
Cpgi20062 8 8689635 to 8690935 1300 CpG island CpG island 20062
Tssr80307 8 8689838 to 8689871 33 - TSS region transcription start site region 80307
Tssr80308 8 8690041 to 8690116 75 - TSS region transcription start site region 80308
Mir7654 8 8690093 to 8690162 69 - miRNA gene microRNA 7654
Tssr80309 8 8690481 to 8690492 11 - TSS region transcription start site region 80309
Tssr80310 8 8690493 to 8690538 45 - TSS region transcription start site region 80310
Tssr76160 8 8693496 to 8693498 2 + TSS region transcription start site region 76160
Cpgi20063 8 8711045 to 8711318 273 CpG island CpG island 20063
Gm18393 8 8711484 to 8712614 1130 + pseudogene predicted gene, 18393
Cpgi20064 8 8711573 to 8711884 311 CpG island CpG island 20064
AU045717 8 8716923 to 8719621 2698 unclassified gene expressed sequence AU045717
Gm44621 8 8716924 to 8721308 4384 - lincRNA gene predicted gene 44621
Gm39127 8 8722957 to 8755164 32207 + lncRNA gene predicted gene, 39127
Gm44626 8 8727111 to 8853647 126536 + lincRNA gene predicted gene 44626
Gm44622 8 8735970 to 8755337 19367 + lincRNA gene predicted gene 44622
Tssr80311 8 8745755 to 8745797 42 - TSS region transcription start site region 80311
Cpgi20065 8 8751257 to 8751540 283 CpG island CpG island 20065
4930540A11Rik 8 8831446 to 8831906 460 unclassified gene RIKEN cDNA 4930540A11 gene
Pnhdlc3 8 23263799 to 7162499 -16101300 QTL plasma non-HDL cholesterol 3
Scc8 8 34642953 to 7162499 -27480454 QTL colon tumor susceptibility 8