Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:58330661-61320681

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galntl6 8 57774052 to 58912640 1138588 - protein coding gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
Tssr77440 8 58523276 to 58523314 38 + TSS region transcription start site region 77440
Gm15882 8 58523294 to 58524326 1032 + antisense lncRNA gene predicted gene 15882
Gm45634 8 58602605 to 58604594 1989 - unclassified gene predicted gene 45634
D8Dcr23 8 58603059 to 58603161 102 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 23
Gm45636 8 58662429 to 58663492 1063 - unclassified gene predicted gene 45636
D8Mit231 8 58682433 to 58682569 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 231
Gm15881 8 58699846 to 58700787 941 - pseudogene predicted gene 15881
Tssr81354 8 58700981 to 58701000 19 - TSS region transcription start site region 81354
Tssr81355 8 58701003 to 58701024 21 - TSS region transcription start site region 81355
BC030500 8 58911755 to 58914298 2543 + protein coding gene cDNA sequence BC030500
Tssr81356 8 58911831 to 58911848 17 - TSS region transcription start site region 81356
Cpgi20368 8 58912199 to 58913289 1090 CpG island CpG island 20368
Tssr81357 8 58912305 to 58912337 32 - TSS region transcription start site region 81357
Tssr81358 8 58913272 to 58913286 14 - TSS region transcription start site region 81358
Tssr77441 8 58913696 to 58913704 8 + TSS region transcription start site region 77441
Gm7499 8 59092611 to 59093423 812 - pseudogene predicted gene 7499
Gm5740 8 59219317 to 59221173 1856 + pseudogene predicted gene 5740
Tssr77442 8 59419383 to 59419388 5 + TSS region transcription start site region 77442
Gm34370 8 59419445 to 59449647 30202 + lincRNA gene predicted gene, 34370
Gm34420 8 59458540 to 59478458 19918 - lncRNA gene predicted gene, 34420
D8Mit144 8 59490990 to 59491137 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 144
D8Dcr24 8 59495141 to 59495252 111 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 24
Gm24847 8 59559315 to 59559422 107 + snRNA gene predicted gene, 24847
D8Mit129 8 59818546 to 59818656 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 129
4930470O06Rik 8 59825649 to 59844721 19072 + lincRNA gene RIKEN cDNA 4930470O06 gene
Tssr77443 8 59825661 to 59825681 20 + TSS region transcription start site region 77443
Gm26164 8 60079590 to 60079693 103 + snRNA gene predicted gene, 26164
Gm34623 8 60195838 to 60280351 84513 + lincRNA gene predicted gene, 34623
Tssr77444 8 60195838 to 60195851 13 + TSS region transcription start site region 77444
Tssr77445 8 60195883 to 60195891 8 + TSS region transcription start site region 77445
Gm19230 8 60262262 to 60265885 3623 - pseudogene predicted gene, 19230
Tssr81359 8 60329546 to 60329549 3 - TSS region transcription start site region 81359
Gm10283 8 60430024 to 60503198 73174 - protein coding gene predicted gene 10283
Tssr81360 8 60452626 to 60452628 2 - TSS region transcription start site region 81360
Tssr81361 8 60503224 to 60503233 9 - TSS region transcription start site region 81361
Cpgi20369 8 60505768 to 60506214 446 CpG island CpG island 20369
Tssr77446 8 60505897 to 60505910 13 + TSS region transcription start site region 77446
Aadat 8 60505932 to 60545677 39745 + protein coding gene aminoadipate aminotransferase
Tssr77447 8 60506109 to 60506125 16 + TSS region transcription start site region 77447
Tssr2573 8 60506177 to 60506184 7 + TSS region transcription start site region 2573
Tssr77448 8 60508724 to 60508728 4 + TSS region transcription start site region 77448
Tssr77449 8 60516014 to 60516041 27 + TSS region transcription start site region 77449
Tssr81362 8 60516056 to 60516082 26 - TSS region transcription start site region 81362
Tssr77450 8 60518238 to 60518242 4 + TSS region transcription start site region 77450
Tssr2574 8 60522452 to 60522470 18 + TSS region transcription start site region 2574
Tssr77451 8 60522684 to 60522709 25 + TSS region transcription start site region 77451
Tssr77452 8 60524205 to 60524212 7 + TSS region transcription start site region 77452
Tssr2575 8 60524235 to 60524241 6 + TSS region transcription start site region 2575
Tssr77453 8 60524318 to 60524324 6 + TSS region transcription start site region 77453
Gm34730 8 60618788 to 60631885 13097 - bidirectional promoter lncRNA gene predicted gene, 34730
Cpgi20370 8 60632281 to 60633636 1355 CpG island CpG island 20370
Tssr77454 8 60632806 to 60632815 9 + TSS region transcription start site region 77454
Tssr77455 8 60632818 to 60632836 18 + TSS region transcription start site region 77455
Mfap3l 8 60632827 to 60676729 43902 + protein coding gene microfibrillar-associated protein 3-like
Tssr77456 8 60632856 to 60632905 49 + TSS region transcription start site region 77456
Cpgi20371 8 60640041 to 60640294 253 CpG island CpG island 20371
Tssr77457 8 60640379 to 60640389 10 + TSS region transcription start site region 77457
Tssr77458 8 60640853 to 60640873 20 + TSS region transcription start site region 77458
Tssr77459 8 60655500 to 60655522 22 + TSS region transcription start site region 77459
Tssr77460 8 60655545 to 60655562 17 + TSS region transcription start site region 77460
Tssr77461 8 60671573 to 60671585 12 + TSS region transcription start site region 77461
Tssr77462 8 60673360 to 60673366 6 + TSS region transcription start site region 77462
Tssr77463 8 60674354 to 60674376 22 + TSS region transcription start site region 77463
Tssr77464 8 60674500 to 60674513 13 + TSS region transcription start site region 77464
Tssr77465 8 60674546 to 60674557 11 + TSS region transcription start site region 77465
Tssr77466 8 60674571 to 60674583 12 + TSS region transcription start site region 77466
Gm45650 8 60719291 to 60725806 6515 + lincRNA gene predicted gene 45650
Gm45651 8 60757119 to 60757453 334 + pseudogene predicted gene 45651
Stambp-ps2 8 60792859 to 60793697 838 + pseudogene STAM binding protein, pseudogene 2
Gm23329 8 60807739 to 60807846 107 - snoRNA gene predicted gene, 23329
Tssr77467 8 60842299 to 60842312 13 + TSS region transcription start site region 77467
Tssr77468 8 60842342 to 60842354 12 + TSS region transcription start site region 77468
Gm45485 8 60846312 to 60846668 356 + pseudogene predicted gene 45485
Tssr77469 8 60863844 to 60863848 4 + TSS region transcription start site region 77469
Tssr77470 8 60864534 to 60864544 10 + TSS region transcription start site region 77470
Tssr77471 8 60870015 to 60870019 4 + TSS region transcription start site region 77471
Cpgi20372 8 60890108 to 60890850 742 CpG island CpG island 20372
Tssr77472 8 60890387 to 60890401 14 + TSS region transcription start site region 77472
Hpf1 8 60890394 to 60907580 17186 + protein coding gene histone PARylation factor 1
Tssr77473 8 60890410 to 60890483 73 + TSS region transcription start site region 77473
Tssr81363 8 60891447 to 60891469 22 - TSS region transcription start site region 81363
Tssr77474 8 60895567 to 60895585 18 + TSS region transcription start site region 77474
Clcn3 8 60910389 to 60983300 72911 - protein coding gene chloride channel, voltage-sensitive 3
Gm18394 8 60935642 to 60936200 558 + pseudogene predicted gene, 18394
Tssr81364 8 60941400 to 60941417 17 - TSS region transcription start site region 81364
Tssr81365 8 60951915 to 60951918 3 - TSS region transcription start site region 81365
Tssr81366 8 60954726 to 60954790 64 - TSS region transcription start site region 81366
Tssr81367 8 60954792 to 60954803 11 - TSS region transcription start site region 81367
Tssr81368 8 60954868 to 60954877 9 - TSS region transcription start site region 81368
9030622M22Rik 8 60963038 to 60965021 1983 unclassified gene RIKEN cDNA 9030622M22 gene
Tssr81369 8 60965440 to 60965470 30 - TSS region transcription start site region 81369
Cpgi20373 8 60982646 to 60983929 1283 CpG island CpG island 20373
Tssr81370 8 60983215 to 60983319 104 - TSS region transcription start site region 81370
B230317F23Rik 8 60983437 to 60985908 2471 + lincRNA gene RIKEN cDNA B230317F23 gene
Cpgi20374 8 60992725 to 60993818 1093 CpG island CpG island 20374
Tssr77475 8 60993189 to 60993247 58 + TSS region transcription start site region 77475
Nek1 8 60993195 to 61131346 138151 + protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 1
Tssr77476 8 60993553 to 60993568 15 + TSS region transcription start site region 77476
Gm45484 8 61024131 to 61025271 1140 + unclassified gene predicted gene 45484
Gm45809 8 61050049 to 61053942 3893 + unclassified gene predicted gene 45809
Gm45483 8 61075365 to 61077046 1681 + unclassified gene predicted gene 45483
D8Ertd124e 8 61091165 to 61091379 214 DNA segment DNA segment, Chr 8, ERATO Doi 124, expressed
Gm16179 8 61112130 to 61112502 372 - pseudogene predicted gene 16179
Gm16178 8 61117605 to 61194648 77043 - antisense lncRNA gene predicted gene 16178
Tssr2576 8 61130535 to 61130539 4 + TSS region transcription start site region 2576
Acigg8 8 61221786 to 75127057 13905271 QTL anti COL7 IgG2b antibody 8
Cpgi20375 8 61223667 to 61225033 1366 CpG island CpG island 20375
Sh3rf1 8 61223872 to 61396071 172199 + protein coding gene SH3 domain containing ring finger 1
Tssr77477 8 61224162 to 61224174 12 + TSS region transcription start site region 77477
Tssr77478 8 61224187 to 61224211 24 + TSS region transcription start site region 77478
Tssr77479 8 61224220 to 61224251 31 + TSS region transcription start site region 77479
Tssr77480 8 61224258 to 61224275 17 + TSS region transcription start site region 77480
Tssr77481 8 61225844 to 61225857 13 + TSS region transcription start site region 77481
Tssr77482 8 61239391 to 61239394 3 + TSS region transcription start site region 77482
Cpgi20376 8 61243008 to 61243183 175 CpG island CpG island 20376
Tssr77483 8 61280942 to 61280947 5 + TSS region transcription start site region 77483
1700001D01Rik 8 61281522 to 61288872 7350 - antisense lncRNA gene RIKEN cDNA 1700001D01 gene
Tssr81371 8 61289328 to 61289329 1 - TSS region transcription start site region 81371
Tssr77484 8 61293779 to 61293783 4 + TSS region transcription start site region 77484
Iba3 8 61294880 to 61295025 145 QTL induction of brown adipocytes 3
D8Mit128 8 61294880 to 61295025 145 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 128
Gm40499 8 61307663 to 61313426 5763 + lncRNA gene predicted gene, 40499
D8Mit160 8 61308418 to 61308564 146 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 160