Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:57354505-58247906

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
5033428I22Rik 8 57332435 to 57354580 22145 + lincRNA gene RIKEN cDNA 5033428I22 gene
Gm34099 8 57403117 to 57415049 11932 + lincRNA gene predicted gene, 34099
Tssr81334 8 57432784 to 57432791 7 - TSS region transcription start site region 81334
Tssr77417 8 57436373 to 57436388 15 + TSS region transcription start site region 77417
Tssr77418 8 57436394 to 57436414 20 + TSS region transcription start site region 77418
Tssr77419 8 57436432 to 57436446 14 + TSS region transcription start site region 77419
Tssr77420 8 57436457 to 57436462 5 + TSS region transcription start site region 77420
Tssr77421 8 57436485 to 57436490 5 + TSS region transcription start site region 77421
Gm18136 8 57446581 to 57447101 520 - pseudogene predicted gene, 18136
Tssr77422 8 57455898 to 57455904 6 + TSS region transcription start site region 77422
Scrg1 8 57455923 to 57477585 21662 + protein coding gene scrapie responsive gene 1
Tssr77423 8 57455977 to 57455997 20 + TSS region transcription start site region 77423
Tssr77424 8 57456002 to 57456018 16 + TSS region transcription start site region 77424
Tssr77425 8 57456020 to 57456036 16 + TSS region transcription start site region 77425
Tssr77426 8 57456040 to 57456084 44 + TSS region transcription start site region 77426
Sap30 8 57482707 to 57487860 5153 - protein coding gene sin3 associated polypeptide
Cpgi20363 8 57486688 to 57488675 1987 CpG island CpG island 20363
Tssr81335 8 57487563 to 57487578 15 - TSS region transcription start site region 81335
Tssr81336 8 57487590 to 57487605 15 - TSS region transcription start site region 81336
Tssr81337 8 57487691 to 57487700 9 - TSS region transcription start site region 81337
Tssr81338 8 57487736 to 57487795 59 - TSS region transcription start site region 81338
Tssr81339 8 57487801 to 57487871 70 - TSS region transcription start site region 81339
Tssr77427 8 57488034 to 57488052 18 + TSS region transcription start site region 77427
Tssr77428 8 57488053 to 57488065 12 + TSS region transcription start site region 77428
2500002B13Rik 8 57488054 to 57508877 20823 + lncRNA gene RIKEN cDNA 2500002B13 gene
Tssr77429 8 57488066 to 57488097 31 + TSS region transcription start site region 77429
Tssr77430 8 57489617 to 57489631 14 + TSS region transcription start site region 77430
Tssr77431 8 57490317 to 57490328 11 + TSS region transcription start site region 77431
Tssr77432 8 57490331 to 57490359 28 + TSS region transcription start site region 77432
Cpgi20364 8 57510973 to 57512927 1954 CpG island CpG island 20364
Tssr81340 8 57511513 to 57511532 19 - TSS region transcription start site region 81340
Tssr77433 8 57511833 to 57511869 36 + TSS region transcription start site region 77433
Tssr2571 8 57511881 to 57511884 3 + TSS region transcription start site region 2571
Tssr77434 8 57511893 to 57511930 37 + TSS region transcription start site region 77434
Hmgb2 8 57511907 to 57515999 4092 + protein coding gene high mobility group box 2
Tssr77435 8 57512521 to 57512567 46 + TSS region transcription start site region 77435
Tssr77436 8 57512845 to 57512894 49 + TSS region transcription start site region 77436
Gm6012 8 57520157 to 57520886 729 - pseudogene predicted gene 6012
Galnt7 8 57523828 to 57653032 129204 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 7
Tssr81341 8 57529110 to 57529130 20 - TSS region transcription start site region 81341
Tssr81342 8 57529139 to 57529148 9 - TSS region transcription start site region 81342
Gm25379 8 57549775 to 57549888 113 + snoRNA gene predicted gene, 25379
Gm10284 8 57550299 to 57551303 1004 + pseudogene predicted pseudogene 10284
Tssr77437 8 57589668 to 57589672 4 + TSS region transcription start site region 77437
Cpgi20365 8 57602070 to 57602244 174 CpG island CpG island 20365
Gm45534 8 57604818 to 57607156 2338 - unclassified gene predicted gene 45534
Tssr81343 8 57619792 to 57619797 5 - TSS region transcription start site region 81343
Gm45360 8 57626083 to 57627487 1404 - unclassified gene predicted gene 45360
D8Dcr22 8 57629218 to 57629325 107 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 22
Gm19269 8 57639330 to 57640133 803 - unclassified gene predicted gene, 19269
Gm45358 8 57641518 to 57643822 2304 - unclassified gene predicted gene 45358
4930412F12Rik 8 57650889 to 57652359 1470 - unclassified non-coding RNA gene RIKEN cDNA 4930412F12 gene
Cpgi20366 8 57651539 to 57653642 2103 CpG island CpG island 20366
Tssr77438 8 57651742 to 57651793 51 + TSS region transcription start site region 77438
AW046200 8 57651757 to 57663430 11673 + bidirectional promoter lncRNA gene expressed sequence AW046200
Tssr81344 8 57652554 to 57652586 32 - TSS region transcription start site region 81344
Tssr77439 8 57652647 to 57652681 34 + TSS region transcription start site region 77439
Tssr81345 8 57652993 to 57653013 20 - TSS region transcription start site region 81345
Tssr81346 8 57653023 to 57653039 16 - TSS region transcription start site region 81346
Tssr81347 8 57653630 to 57653677 47 - TSS region transcription start site region 81347
Gm45359 8 57658262 to 57658688 426 + lincRNA gene predicted gene 45359
Gm45644 8 57696723 to 57699462 2739 + unclassified gene predicted gene 45644
Tssr81348 8 57699443 to 57699454 11 - TSS region transcription start site region 81348
Gm45356 8 57699774 to 57727344 27570 + lincRNA gene predicted gene 45356
Galntl6 8 57774052 to 58912640 1138588 - protein coding gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
Tssr81349 8 57778347 to 57778358 11 - TSS region transcription start site region 81349
Tssr81350 8 57778403 to 57778414 11 - TSS region transcription start site region 81350
Cpgi20367 8 57796414 to 57796615 201 CpG island CpG island 20367
Tssr81351 8 57796533 to 57796562 29 - TSS region transcription start site region 81351
Tssr81352 8 57796574 to 57796596 22 - TSS region transcription start site region 81352
Gm2921 8 57799505 to 57802906 3401 + lncRNA gene predicted gene 2921
Tssr2572 8 57801292 to 57801302 10 - TSS region transcription start site region 2572
Gm45633 8 57891743 to 57894995 3252 + unclassified gene predicted gene 45633
Gm26905 8 58171435 to 58298866 127431 + lincRNA gene predicted gene, 26905
Gm45635 8 58246587 to 58248720 2133 + unclassified gene predicted gene 45635