Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:56551539-58753642

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr10 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10
Lmr10c 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10c
Lmr10b 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10b
Lmr10a 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10a
Cpgi20355 8 56550529 to 56551863 1334 CpG island CpG island 20355
Fbxo8 8 56551134 to 56593939 42805 + protein coding gene F-box protein 8
Gm2767 8 56560916 to 56561388 472 + pseudogene predicted gene 2767
Gm25992 8 56561301 to 56561409 108 + miRNA gene predicted gene, 25992
Tssr77407 8 56617485 to 56617497 12 + TSS region transcription start site region 77407
Tssr81318 8 56625185 to 56625191 6 - TSS region transcription start site region 81318
D8Mit100 8 56660799 to 56660907 108 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 100
D8Mit69 8 56699102 to 56699245 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 69
Gm6503 8 56713117 to 56715270 2153 + pseudogene predicted gene 6503
Gm33501 8 56872114 to 56888803 16689 - lincRNA gene predicted gene, 33501
Tssr77408 8 56877237 to 56877239 2 + TSS region transcription start site region 77408
Gm7328 8 56952829 to 56955053 2224 + pseudogene predicted gene 7328
D8Mit68 8 56990966 to 56991105 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 68
Gm17994 8 57291522 to 57292040 518 - pseudogene predicted gene, 17994
Hand2os1 8 57304414 to 57320859 16445 - antisense lncRNA gene Hand2, opposite strand 1
Tssr81319 8 57305422 to 57305427 5 - TSS region transcription start site region 81319
Tssr81320 8 57306413 to 57306444 31 - TSS region transcription start site region 81320
Tssr81321 8 57310267 to 57310277 10 - TSS region transcription start site region 81321
Tssr81322 8 57310382 to 57310393 11 - TSS region transcription start site region 81322
Cpgi20356 8 57312713 to 57313258 545 CpG island CpG island 20356
Tssr81323 8 57314620 to 57314623 3 - TSS region transcription start site region 81323
Cpgi20357 8 57320009 to 57320225 216 CpG island CpG island 20357
Tssr81324 8 57320306 to 57320318 12 - TSS region transcription start site region 81324
Tssr81325 8 57320346 to 57320359 13 - TSS region transcription start site region 81325
Tssr81326 8 57320366 to 57320379 13 - TSS region transcription start site region 81326
Tssr81327 8 57320386 to 57320399 13 - TSS region transcription start site region 81327
Tssr81328 8 57320402 to 57320421 19 - TSS region transcription start site region 81328
Tssr81329 8 57320431 to 57320471 40 - TSS region transcription start site region 81329
Tssr81330 8 57320736 to 57320769 33 - TSS region transcription start site region 81330
Cpgi20358 8 57320840 to 57322650 1810 CpG island CpG island 20358
Tssr81331 8 57320843 to 57320871 28 - TSS region transcription start site region 81331
Tssr77409 8 57320975 to 57320992 17 + TSS region transcription start site region 77409
Hand2 8 57320983 to 57324517 3534 + protein coding gene heart and neural crest derivatives expressed 2
Tssr77410 8 57321001 to 57321013 12 + TSS region transcription start site region 77410
Tssr77411 8 57322194 to 57322257 63 + TSS region transcription start site region 77411
Tssr81332 8 57323033 to 57323040 7 - TSS region transcription start site region 81332
Tssr77412 8 57323313 to 57323324 11 + TSS region transcription start site region 77412
Tssr77413 8 57323326 to 57323335 9 + TSS region transcription start site region 77413
Cpgi20359 8 57328270 to 57328977 707 CpG island CpG island 20359
Gm34030 8 57331692 to 57334585 2893 - lincRNA gene predicted gene, 34030
Tssr77414 8 57332111 to 57332131 20 + TSS region transcription start site region 77414
Tssr77415 8 57332425 to 57332455 30 + TSS region transcription start site region 77415
5033428I22Rik 8 57332435 to 57354580 22145 + lincRNA gene RIKEN cDNA 5033428I22 gene
Tssr81333 8 57332829 to 57332891 62 - TSS region transcription start site region 81333
Cpgi20360 8 57333859 to 57334506 647 CpG island CpG island 20360
Cpgi20361 8 57340839 to 57341436 597 CpG island CpG island 20361
Tssr77416 8 57340970 to 57340990 20 + TSS region transcription start site region 77416
D8Mit54 8 57344354 to 57344598 244 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 54
Cpgi20362 8 57353556 to 57354223 667 CpG island CpG island 20362
Gm34099 8 57403117 to 57415049 11932 + lincRNA gene predicted gene, 34099
Tssr81334 8 57432784 to 57432791 7 - TSS region transcription start site region 81334
Tssr77417 8 57436373 to 57436388 15 + TSS region transcription start site region 77417
Tssr77418 8 57436394 to 57436414 20 + TSS region transcription start site region 77418
Tssr77419 8 57436432 to 57436446 14 + TSS region transcription start site region 77419
Tssr77420 8 57436457 to 57436462 5 + TSS region transcription start site region 77420
Tssr77421 8 57436485 to 57436490 5 + TSS region transcription start site region 77421
Gm18136 8 57446581 to 57447101 520 - pseudogene predicted gene, 18136
Tssr77422 8 57455898 to 57455904 6 + TSS region transcription start site region 77422
Scrg1 8 57455923 to 57477585 21662 + protein coding gene scrapie responsive gene 1
Tssr77423 8 57455977 to 57455997 20 + TSS region transcription start site region 77423
Tssr77424 8 57456002 to 57456018 16 + TSS region transcription start site region 77424
Tssr77425 8 57456020 to 57456036 16 + TSS region transcription start site region 77425
Tssr77426 8 57456040 to 57456084 44 + TSS region transcription start site region 77426
Sap30 8 57482707 to 57487860 5153 - protein coding gene sin3 associated polypeptide
Cpgi20363 8 57486688 to 57488675 1987 CpG island CpG island 20363
Tssr81335 8 57487563 to 57487578 15 - TSS region transcription start site region 81335
Tssr81336 8 57487590 to 57487605 15 - TSS region transcription start site region 81336
Tssr81337 8 57487691 to 57487700 9 - TSS region transcription start site region 81337
Tssr81338 8 57487736 to 57487795 59 - TSS region transcription start site region 81338
Tssr81339 8 57487801 to 57487871 70 - TSS region transcription start site region 81339
Tssr77427 8 57488034 to 57488052 18 + TSS region transcription start site region 77427
Tssr77428 8 57488053 to 57488065 12 + TSS region transcription start site region 77428
2500002B13Rik 8 57488054 to 57508877 20823 + lncRNA gene RIKEN cDNA 2500002B13 gene
Tssr77429 8 57488066 to 57488097 31 + TSS region transcription start site region 77429
Tssr77430 8 57489617 to 57489631 14 + TSS region transcription start site region 77430
Tssr77431 8 57490317 to 57490328 11 + TSS region transcription start site region 77431
Tssr77432 8 57490331 to 57490359 28 + TSS region transcription start site region 77432
Cpgi20364 8 57510973 to 57512927 1954 CpG island CpG island 20364
Tssr81340 8 57511513 to 57511532 19 - TSS region transcription start site region 81340
Tssr77433 8 57511833 to 57511869 36 + TSS region transcription start site region 77433
Tssr2571 8 57511881 to 57511884 3 + TSS region transcription start site region 2571
Tssr77434 8 57511893 to 57511930 37 + TSS region transcription start site region 77434
Hmgb2 8 57511907 to 57515999 4092 + protein coding gene high mobility group box 2
Tssr77435 8 57512521 to 57512567 46 + TSS region transcription start site region 77435
Tssr77436 8 57512845 to 57512894 49 + TSS region transcription start site region 77436
Gm6012 8 57520157 to 57520886 729 - pseudogene predicted gene 6012
Galnt7 8 57523828 to 57653032 129204 - protein coding gene polypeptide N-acetylgalactosaminyltransferase 7
Tssr81341 8 57529110 to 57529130 20 - TSS region transcription start site region 81341
Tssr81342 8 57529139 to 57529148 9 - TSS region transcription start site region 81342
Gm25379 8 57549775 to 57549888 113 + snoRNA gene predicted gene, 25379
Gm10284 8 57550299 to 57551303 1004 + pseudogene predicted pseudogene 10284
Tssr77437 8 57589668 to 57589672 4 + TSS region transcription start site region 77437
Cpgi20365 8 57602070 to 57602244 174 CpG island CpG island 20365
Gm45534 8 57604818 to 57607156 2338 - unclassified gene predicted gene 45534
Tssr81343 8 57619792 to 57619797 5 - TSS region transcription start site region 81343
Gm45360 8 57626083 to 57627487 1404 - unclassified gene predicted gene 45360
D8Dcr22 8 57629218 to 57629325 107 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 22
Gm19269 8 57639330 to 57640133 803 - unclassified gene predicted gene, 19269
Gm45358 8 57641518 to 57643822 2304 - unclassified gene predicted gene 45358
4930412F12Rik 8 57650889 to 57652359 1470 - unclassified non-coding RNA gene RIKEN cDNA 4930412F12 gene
Cpgi20366 8 57651539 to 57653642 2103 CpG island CpG island 20366
Tssr77438 8 57651742 to 57651793 51 + TSS region transcription start site region 77438
AW046200 8 57651757 to 57663430 11673 + bidirectional promoter lncRNA gene expressed sequence AW046200
Tssr81344 8 57652554 to 57652586 32 - TSS region transcription start site region 81344
Tssr77439 8 57652647 to 57652681 34 + TSS region transcription start site region 77439
Tssr81345 8 57652993 to 57653013 20 - TSS region transcription start site region 81345
Tssr81346 8 57653023 to 57653039 16 - TSS region transcription start site region 81346
Tssr81347 8 57653630 to 57653677 47 - TSS region transcription start site region 81347
Gm45359 8 57658262 to 57658688 426 + lincRNA gene predicted gene 45359
Gm45644 8 57696723 to 57699462 2739 + unclassified gene predicted gene 45644
Tssr81348 8 57699443 to 57699454 11 - TSS region transcription start site region 81348
Gm45356 8 57699774 to 57727344 27570 + lincRNA gene predicted gene 45356
Galntl6 8 57774052 to 58912640 1138588 - protein coding gene UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
Tssr81349 8 57778347 to 57778358 11 - TSS region transcription start site region 81349
Tssr81350 8 57778403 to 57778414 11 - TSS region transcription start site region 81350
Cpgi20367 8 57796414 to 57796615 201 CpG island CpG island 20367
Tssr81351 8 57796533 to 57796562 29 - TSS region transcription start site region 81351
Tssr81352 8 57796574 to 57796596 22 - TSS region transcription start site region 81352
Gm2921 8 57799505 to 57802906 3401 + lncRNA gene predicted gene 2921
Tssr2572 8 57801292 to 57801302 10 - TSS region transcription start site region 2572
Gm45633 8 57891743 to 57894995 3252 + unclassified gene predicted gene 45633
Gm26905 8 58171435 to 58298866 127431 + lincRNA gene predicted gene, 26905
Gm45635 8 58246587 to 58248720 2133 + unclassified gene predicted gene 45635
D8Mit260 8 58254236 to 58254332 96 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 260
Tssr81353 8 58257815 to 58257826 11 - TSS region transcription start site region 81353
Tssr77440 8 58523276 to 58523314 38 + TSS region transcription start site region 77440
Gm15882 8 58523294 to 58524326 1032 + antisense lncRNA gene predicted gene 15882
Gm45634 8 58602605 to 58604594 1989 - unclassified gene predicted gene 45634
D8Dcr23 8 58603059 to 58603161 102 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 23
Gm45636 8 58662429 to 58663492 1063 - unclassified gene predicted gene 45636
D8Mit231 8 58682433 to 58682569 136 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 231
Gm15881 8 58699846 to 58700787 941 - pseudogene predicted gene 15881
Tssr81354 8 58700981 to 58701000 19 - TSS region transcription start site region 81354
Tssr81355 8 58701003 to 58701024 21 - TSS region transcription start site region 81355