Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:54680453-57200472

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wdr17 8 54629611 to 54724518 94907 - protein coding gene WD repeat domain 17
Gm15758 8 54708987 to 54710381 1394 + unclassified non-coding RNA gene predicted gene 15758
Tssr81310 8 54718664 to 54718689 25 - TSS region transcription start site region 81310
Cpgi20352 8 54724187 to 54724571 384 CpG island CpG island 20352
Tssr81311 8 54724317 to 54724373 56 - TSS region transcription start site region 81311
Tssr81312 8 54724474 to 54724494 20 - TSS region transcription start site region 81312
Tssr77377 8 54779522 to 54779583 61 + TSS region transcription start site region 77377
Tssr77378 8 54779590 to 54779610 20 + TSS region transcription start site region 77378
n-R5s98 8 54866261 to 54866379 118 + rRNA gene nuclear encoded rRNA 5S 98
Tssr81313 8 54886964 to 54886999 35 - TSS region transcription start site region 81313
D8Mit246 8 54895810 to 54895935 125 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 246
Tssr77379 8 54954809 to 54954820 11 + TSS region transcription start site region 77379
Tssr77380 8 54954837 to 54954854 17 + TSS region transcription start site region 77380
Gpm6a 8 54954843 to 55060871 106028 + protein coding gene glycoprotein m6a
Tssr77381 8 54954856 to 54954872 16 + TSS region transcription start site region 77381
Tssr77382 8 54954891 to 54954927 36 + TSS region transcription start site region 77382
Tssr77383 8 54954934 to 54954949 15 + TSS region transcription start site region 77383
Tssr77384 8 54954969 to 54954974 5 + TSS region transcription start site region 77384
Tssr77385 8 54954994 to 54955010 16 + TSS region transcription start site region 77385
Tssr77386 8 54955023 to 54955024 1 + TSS region transcription start site region 77386
Tssr77387 8 54955026 to 54955037 11 + TSS region transcription start site region 77387
Tssr77388 8 54955093 to 54955117 24 + TSS region transcription start site region 77388
Tssr77389 8 54955140 to 54955183 43 + TSS region transcription start site region 77389
Tssr77390 8 54955201 to 54955212 11 + TSS region transcription start site region 77390
Tssr77391 8 54955213 to 54955231 18 + TSS region transcription start site region 77391
Tssr77392 8 54955246 to 54955280 34 + TSS region transcription start site region 77392
Gm45263 8 54959819 to 54961193 1374 + unclassified gene predicted gene 45263
Tssr77393 8 54978893 to 54978905 12 + TSS region transcription start site region 77393
Tssr77394 8 54985950 to 54985956 6 + TSS region transcription start site region 77394
Gm45265 8 55005285 to 55007781 2496 + unclassified gene predicted gene 45265
Gm45264 8 55028401 to 55032395 3994 + unclassified gene predicted gene 45264
Gm45262 8 55043059 to 55044521 1462 + unclassified gene predicted gene 45262
A230085B16Rik 8 55055874 to 55057729 1855 + unclassified non-coding RNA gene RIKEN cDNA A230085B16 gene
Tssr77395 8 55059109 to 55059124 15 + TSS region transcription start site region 77395
Tssr77396 8 55059152 to 55059164 12 + TSS region transcription start site region 77396
Tssr2567 8 55059222 to 55059241 19 + TSS region transcription start site region 2567
9330121K16Rik 8 55073249 to 55077134 3885 + unclassified gene RIKEN cDNA 9330121K16 gene
Gm8734 8 55080404 to 55081715 1311 - pseudogene predicted gene 8734
Gm46063 8 55348649 to 55351792 3143 + protein coding gene predicted gene, 46063
Tssr2568 8 55401676 to 55401682 6 - TSS region transcription start site region 2568
Gm36387 8 55423876 to 55424191 315 + pseudogene predicted gene, 36387
Gm20586 8 55532291 to 55532837 546 + pseudogene predicted gene, 20586
Gm36453 8 55552813 to 55553128 315 + pseudogene predicted gene, 36453
Gm18320 8 55659390 to 55659947 557 + pseudogene predicted gene, 18320
Gm45610 8 55777199 to 55777982 783 + pseudogene predicted gene 45610
Adam29 8 55870912 to 55906948 36036 - protein coding gene a disintegrin and metallopeptidase domain 29
Tssr81314 8 55906963 to 55906977 14 - TSS region transcription start site region 81314
Cpgi20353 8 55940409 to 55940629 220 CpG island CpG island 20353
Tssr77397 8 55940410 to 55940451 41 + TSS region transcription start site region 77397
Glra3 8 55940411 to 56125352 184941 + protein coding gene glycine receptor, alpha 3 subunit
Tssr77398 8 55940453 to 55940472 19 + TSS region transcription start site region 77398
Gm7351 8 55973640 to 55974219 579 - pseudogene predicted gene 7351
Gm45366 8 56016717 to 56017100 383 - pseudogene predicted gene 45366
9330109K16Rik 8 56129640 to 56130073 433 unclassified gene RIKEN cDNA 9330109K16 gene
Tssr77399 8 56183297 to 56183304 7 + TSS region transcription start site region 77399
Tssr81315 8 56229155 to 56229162 7 - TSS region transcription start site region 81315
Tssr2569 8 56288421 to 56288423 2 + TSS region transcription start site region 2569
D8Dcr21 8 56291758 to 56291857 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 21
Cpgi20354 8 56294418 to 56294866 448 CpG island CpG island 20354
Tssr77400 8 56294578 to 56294592 14 + TSS region transcription start site region 77400
Hpgd 8 56294585 to 56321043 26458 + protein coding gene hydroxyprostaglandin dehydrogenase 15 (NAD)
Tssr77401 8 56297417 to 56297421 4 + TSS region transcription start site region 77401
Tssr77402 8 56305703 to 56305705 2 + TSS region transcription start site region 77402
Gm45540 8 56311304 to 56314909 3605 + unclassified gene predicted gene 45540
Tssr77403 8 56320050 to 56320060 10 + TSS region transcription start site region 77403
Tssr2570 8 56344696 to 56344697 1 + TSS region transcription start site region 2570
Gm7419 8 56453515 to 56454438 923 + pseudogene predicted gene 7419
D8Mit299 8 56464911 to 56465024 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 299
4930518J21Rik 8 56465622 to 56484968 19346 - lincRNA gene RIKEN cDNA 4930518J21 gene
Tssr81316 8 56474416 to 56474425 9 - TSS region transcription start site region 81316
Gm24375 8 56521372 to 56521503 131 - snoRNA gene predicted gene, 24375
Cep44 8 56531516 to 56550874 19358 - protein coding gene centrosomal protein 44
Cpgi20355 8 56550529 to 56551863 1334 CpG island CpG island 20355
Tssr81317 8 56550791 to 56550881 90 - TSS region transcription start site region 81317
Tssr77404 8 56551103 to 56551143 40 + TSS region transcription start site region 77404
Fbxo8 8 56551134 to 56593939 42805 + protein coding gene F-box protein 8
Tssr77405 8 56551145 to 56551161 16 + TSS region transcription start site region 77405
Tssr77406 8 56551166 to 56551177 11 + TSS region transcription start site region 77406
Gm2767 8 56560916 to 56561388 472 + pseudogene predicted gene 2767
Gm25992 8 56561301 to 56561409 108 + miRNA gene predicted gene, 25992
Tssr77407 8 56617485 to 56617497 12 + TSS region transcription start site region 77407
Tssr81318 8 56625185 to 56625191 6 - TSS region transcription start site region 81318
D8Mit100 8 56660799 to 56660907 108 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 100
D8Mit69 8 56699102 to 56699245 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 69
Gm6503 8 56713117 to 56715270 2153 + pseudogene predicted gene 6503
Gm33501 8 56872114 to 56888803 16689 - lincRNA gene predicted gene, 33501
Tssr77408 8 56877237 to 56877239 2 + TSS region transcription start site region 77408
Gm7328 8 56952829 to 56955053 2224 + pseudogene predicted gene 7328
D8Mit68 8 56990966 to 56991105 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 68