Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:54470453-57410472

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmr10 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10
Lmr10a 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10a
Lmr10b 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10b
Lmr10c 8 34853943 to 57344598 22490655 QTL leishmaniasis resistance 10c
Gm45553 8 54513644 to 54514150 506 - unclassified gene predicted gene 45553
Spcs3 8 54520433 to 54529998 9565 - protein coding gene signal peptidase complex subunit 3 homolog (S. cerevisiae)
Tssr81303 8 54523154 to 54523161 7 - TSS region transcription start site region 81303
Tssr81304 8 54525709 to 54525717 8 - TSS region transcription start site region 81304
Tssr77367 8 54528025 to 54528031 6 + TSS region transcription start site region 77367
Cpgi20350 8 54529301 to 54530219 918 CpG island CpG island 20350
Tssr81305 8 54529349 to 54529363 14 - TSS region transcription start site region 81305
Tssr81306 8 54529402 to 54529414 12 - TSS region transcription start site region 81306
Tssr77368 8 54529606 to 54529633 27 + TSS region transcription start site region 77368
Tssr81307 8 54529935 to 54529946 11 - TSS region transcription start site region 81307
Tssr81308 8 54529951 to 54530007 56 - TSS region transcription start site region 81308
Tssr77369 8 54550324 to 54550339 15 + TSS region transcription start site region 77369
Asb5 8 54550331 to 54587842 37511 + protein coding gene ankyrin repeat and SOCs box-containing 5
Tssr77370 8 54550384 to 54550397 13 + TSS region transcription start site region 77370
Tssr77371 8 54550423 to 54550439 16 + TSS region transcription start site region 77371
Tssr77372 8 54565867 to 54565886 19 + TSS region transcription start site region 77372
5330439A09Rik 8 54568550 to 54582512 13962 - antisense lncRNA gene RIKEN cDNA 5330439A09 gene
Tssr77373 8 54571430 to 54571469 39 + TSS region transcription start site region 77373
Tssr77374 8 54582629 to 54582632 3 + TSS region transcription start site region 77374
Gm46039 8 54596123 to 54599395 3272 + lncRNA gene predicted gene, 46039
D8Dcr20 8 54597803 to 54597898 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 20
Cpgi20351 8 54600717 to 54600977 260 CpG island CpG island 20351
Tssr77375 8 54600774 to 54600804 30 + TSS region transcription start site region 77375
Spata4 8 54600781 to 54610098 9317 + protein coding gene spermatogenesis associated 4
Tssr77376 8 54600815 to 54600826 11 + TSS region transcription start site region 77376
Wdr17 8 54629611 to 54724518 94907 - protein coding gene WD repeat domain 17
Tssr81309 8 54644696 to 54644702 6 - TSS region transcription start site region 81309
Gm15758 8 54708987 to 54710381 1394 + unclassified non-coding RNA gene predicted gene 15758
Tssr81310 8 54718664 to 54718689 25 - TSS region transcription start site region 81310
Cpgi20352 8 54724187 to 54724571 384 CpG island CpG island 20352
Tssr81311 8 54724317 to 54724373 56 - TSS region transcription start site region 81311
Tssr81312 8 54724474 to 54724494 20 - TSS region transcription start site region 81312
Tssr77377 8 54779522 to 54779583 61 + TSS region transcription start site region 77377
Tssr77378 8 54779590 to 54779610 20 + TSS region transcription start site region 77378
n-R5s98 8 54866261 to 54866379 118 + rRNA gene nuclear encoded rRNA 5S 98
Tssr81313 8 54886964 to 54886999 35 - TSS region transcription start site region 81313
D8Mit246 8 54895810 to 54895935 125 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 246
Tssr77379 8 54954809 to 54954820 11 + TSS region transcription start site region 77379
Tssr77380 8 54954837 to 54954854 17 + TSS region transcription start site region 77380
Gpm6a 8 54954843 to 55060871 106028 + protein coding gene glycoprotein m6a
Tssr77381 8 54954856 to 54954872 16 + TSS region transcription start site region 77381
Tssr77382 8 54954891 to 54954927 36 + TSS region transcription start site region 77382
Tssr77383 8 54954934 to 54954949 15 + TSS region transcription start site region 77383
Tssr77384 8 54954969 to 54954974 5 + TSS region transcription start site region 77384
Tssr77385 8 54954994 to 54955010 16 + TSS region transcription start site region 77385
Tssr77386 8 54955023 to 54955024 1 + TSS region transcription start site region 77386
Tssr77387 8 54955026 to 54955037 11 + TSS region transcription start site region 77387
Tssr77388 8 54955093 to 54955117 24 + TSS region transcription start site region 77388
Tssr77389 8 54955140 to 54955183 43 + TSS region transcription start site region 77389
Tssr77390 8 54955201 to 54955212 11 + TSS region transcription start site region 77390
Tssr77391 8 54955213 to 54955231 18 + TSS region transcription start site region 77391
Tssr77392 8 54955246 to 54955280 34 + TSS region transcription start site region 77392
Gm45263 8 54959819 to 54961193 1374 + unclassified gene predicted gene 45263
Tssr77393 8 54978893 to 54978905 12 + TSS region transcription start site region 77393
Tssr77394 8 54985950 to 54985956 6 + TSS region transcription start site region 77394
Gm45265 8 55005285 to 55007781 2496 + unclassified gene predicted gene 45265
Gm45264 8 55028401 to 55032395 3994 + unclassified gene predicted gene 45264
Gm45262 8 55043059 to 55044521 1462 + unclassified gene predicted gene 45262
A230085B16Rik 8 55055874 to 55057729 1855 + unclassified non-coding RNA gene RIKEN cDNA A230085B16 gene
Tssr77395 8 55059109 to 55059124 15 + TSS region transcription start site region 77395
Tssr77396 8 55059152 to 55059164 12 + TSS region transcription start site region 77396
Tssr2567 8 55059222 to 55059241 19 + TSS region transcription start site region 2567
9330121K16Rik 8 55073249 to 55077134 3885 + unclassified gene RIKEN cDNA 9330121K16 gene
Gm8734 8 55080404 to 55081715 1311 - pseudogene predicted gene 8734
Gm46063 8 55348649 to 55351792 3143 + protein coding gene predicted gene, 46063
Tssr2568 8 55401676 to 55401682 6 - TSS region transcription start site region 2568
Gm36387 8 55423876 to 55424191 315 + pseudogene predicted gene, 36387
Gm20586 8 55532291 to 55532837 546 + pseudogene predicted gene, 20586
Gm36453 8 55552813 to 55553128 315 + pseudogene predicted gene, 36453
Gm18320 8 55659390 to 55659947 557 + pseudogene predicted gene, 18320
Gm45610 8 55777199 to 55777982 783 + pseudogene predicted gene 45610
Adam29 8 55870912 to 55906948 36036 - protein coding gene a disintegrin and metallopeptidase domain 29
Tssr81314 8 55906963 to 55906977 14 - TSS region transcription start site region 81314
Cpgi20353 8 55940409 to 55940629 220 CpG island CpG island 20353
Tssr77397 8 55940410 to 55940451 41 + TSS region transcription start site region 77397
Glra3 8 55940411 to 56125352 184941 + protein coding gene glycine receptor, alpha 3 subunit
Tssr77398 8 55940453 to 55940472 19 + TSS region transcription start site region 77398
Gm7351 8 55973640 to 55974219 579 - pseudogene predicted gene 7351
Gm45366 8 56016717 to 56017100 383 - pseudogene predicted gene 45366
9330109K16Rik 8 56129640 to 56130073 433 unclassified gene RIKEN cDNA 9330109K16 gene
Tssr77399 8 56183297 to 56183304 7 + TSS region transcription start site region 77399
Tssr81315 8 56229155 to 56229162 7 - TSS region transcription start site region 81315
Tssr2569 8 56288421 to 56288423 2 + TSS region transcription start site region 2569
D8Dcr21 8 56291758 to 56291857 99 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 21
Cpgi20354 8 56294418 to 56294866 448 CpG island CpG island 20354
Tssr77400 8 56294578 to 56294592 14 + TSS region transcription start site region 77400
Hpgd 8 56294585 to 56321043 26458 + protein coding gene hydroxyprostaglandin dehydrogenase 15 (NAD)
Tssr77401 8 56297417 to 56297421 4 + TSS region transcription start site region 77401
Tssr77402 8 56305703 to 56305705 2 + TSS region transcription start site region 77402
Gm45540 8 56311304 to 56314909 3605 + unclassified gene predicted gene 45540
Tssr77403 8 56320050 to 56320060 10 + TSS region transcription start site region 77403
Tssr2570 8 56344696 to 56344697 1 + TSS region transcription start site region 2570
Gm7419 8 56453515 to 56454438 923 + pseudogene predicted gene 7419
D8Mit299 8 56464911 to 56465024 113 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 299
4930518J21Rik 8 56465622 to 56484968 19346 - lincRNA gene RIKEN cDNA 4930518J21 gene
Tssr81316 8 56474416 to 56474425 9 - TSS region transcription start site region 81316
Gm24375 8 56521372 to 56521503 131 - snoRNA gene predicted gene, 24375
Cep44 8 56531516 to 56550874 19358 - protein coding gene centrosomal protein 44
Cpgi20355 8 56550529 to 56551863 1334 CpG island CpG island 20355
Tssr81317 8 56550791 to 56550881 90 - TSS region transcription start site region 81317
Tssr77404 8 56551103 to 56551143 40 + TSS region transcription start site region 77404
Fbxo8 8 56551134 to 56593939 42805 + protein coding gene F-box protein 8
Tssr77405 8 56551145 to 56551161 16 + TSS region transcription start site region 77405
Tssr77406 8 56551166 to 56551177 11 + TSS region transcription start site region 77406
Gm2767 8 56560916 to 56561388 472 + pseudogene predicted gene 2767
Gm25992 8 56561301 to 56561409 108 + miRNA gene predicted gene, 25992
Tssr77407 8 56617485 to 56617497 12 + TSS region transcription start site region 77407
Tssr81318 8 56625185 to 56625191 6 - TSS region transcription start site region 81318
D8Mit100 8 56660799 to 56660907 108 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 100
D8Mit69 8 56699102 to 56699245 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 69
Gm6503 8 56713117 to 56715270 2153 + pseudogene predicted gene 6503
Gm33501 8 56872114 to 56888803 16689 - lincRNA gene predicted gene, 33501
Tssr77408 8 56877237 to 56877239 2 + TSS region transcription start site region 77408
Gm7328 8 56952829 to 56955053 2224 + pseudogene predicted gene 7328
D8Mit68 8 56990966 to 56991105 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 68
Gm17994 8 57291522 to 57292040 518 - pseudogene predicted gene, 17994
Hand2os1 8 57304414 to 57320859 16445 - antisense lncRNA gene Hand2, opposite strand 1
Tssr81319 8 57305422 to 57305427 5 - TSS region transcription start site region 81319
Tssr81320 8 57306413 to 57306444 31 - TSS region transcription start site region 81320
Tssr81321 8 57310267 to 57310277 10 - TSS region transcription start site region 81321
Tssr81322 8 57310382 to 57310393 11 - TSS region transcription start site region 81322
Cpgi20356 8 57312713 to 57313258 545 CpG island CpG island 20356
Tssr81323 8 57314620 to 57314623 3 - TSS region transcription start site region 81323
Cpgi20357 8 57320009 to 57320225 216 CpG island CpG island 20357
Tssr81324 8 57320306 to 57320318 12 - TSS region transcription start site region 81324
Tssr81325 8 57320346 to 57320359 13 - TSS region transcription start site region 81325
Tssr81326 8 57320366 to 57320379 13 - TSS region transcription start site region 81326
Tssr81327 8 57320386 to 57320399 13 - TSS region transcription start site region 81327
Tssr81328 8 57320402 to 57320421 19 - TSS region transcription start site region 81328
Tssr81329 8 57320431 to 57320471 40 - TSS region transcription start site region 81329
Tssr81330 8 57320736 to 57320769 33 - TSS region transcription start site region 81330
Cpgi20358 8 57320840 to 57322650 1810 CpG island CpG island 20358
Tssr81331 8 57320843 to 57320871 28 - TSS region transcription start site region 81331
Tssr77409 8 57320975 to 57320992 17 + TSS region transcription start site region 77409
Hand2 8 57320983 to 57324517 3534 + protein coding gene heart and neural crest derivatives expressed 2
Tssr77410 8 57321001 to 57321013 12 + TSS region transcription start site region 77410
Tssr77411 8 57322194 to 57322257 63 + TSS region transcription start site region 77411
Tssr81332 8 57323033 to 57323040 7 - TSS region transcription start site region 81332
Tssr77412 8 57323313 to 57323324 11 + TSS region transcription start site region 77412
Tssr77413 8 57323326 to 57323335 9 + TSS region transcription start site region 77413
Cpgi20359 8 57328270 to 57328977 707 CpG island CpG island 20359
Gm34030 8 57331692 to 57334585 2893 - lincRNA gene predicted gene, 34030
Tssr77414 8 57332111 to 57332131 20 + TSS region transcription start site region 77414
Tssr77415 8 57332425 to 57332455 30 + TSS region transcription start site region 77415
5033428I22Rik 8 57332435 to 57354580 22145 + lincRNA gene RIKEN cDNA 5033428I22 gene
Tssr81333 8 57332829 to 57332891 62 - TSS region transcription start site region 81333
Cpgi20360 8 57333859 to 57334506 647 CpG island CpG island 20360
Cpgi20361 8 57340839 to 57341436 597 CpG island CpG island 20361
Tssr77416 8 57340970 to 57340990 20 + TSS region transcription start site region 77416
D8Mit54 8 57344354 to 57344598 244 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 54
Cpgi20362 8 57353556 to 57354223 667 CpG island CpG island 20362
Gm34099 8 57403117 to 57415049 11932 + lincRNA gene predicted gene, 34099