Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:53623987-55795381

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neil3 8 53586867 to 53639065 52198 - protein coding gene nei like 3 (E. coli)
Cpgi20348 8 53638468 to 53639160 692 CpG island CpG island 20348
Tssr81298 8 53638945 to 53639021 76 - TSS region transcription start site region 81298
Gm19921 8 53911739 to 53912441 702 + pseudogene predicted gene, 19921
Gm33153 8 54076070 to 54077773 1703 - protein coding gene predicted gene, 33153
Cpgi20349 8 54076781 to 54078070 1289 CpG island CpG island 20349
Tssr77361 8 54077136 to 54077152 16 + TSS region transcription start site region 77361
Tssr77362 8 54077164 to 54077183 19 + TSS region transcription start site region 77362
Tssr77363 8 54077202 to 54077240 38 + TSS region transcription start site region 77363
Tssr77364 8 54077243 to 54077256 13 + TSS region transcription start site region 77364
Tssr77365 8 54077494 to 54077524 30 + TSS region transcription start site region 77365
Vegfc 8 54077532 to 54186454 108922 + protein coding gene vascular endothelial growth factor C
Tssr81299 8 54078000 to 54078023 23 - TSS region transcription start site region 81299
Tssr77366 8 54106954 to 54106958 4 + TSS region transcription start site region 77366
Tssr81300 8 54393647 to 54393656 9 - TSS region transcription start site region 81300
Tssr81301 8 54412291 to 54412327 36 - TSS region transcription start site region 81301
Tssr81302 8 54412341 to 54412360 19 - TSS region transcription start site region 81302
Gm45553 8 54513644 to 54514150 506 - unclassified gene predicted gene 45553
Spcs3 8 54520433 to 54529998 9565 - protein coding gene signal peptidase complex subunit 3 homolog (S. cerevisiae)
Tssr81303 8 54523154 to 54523161 7 - TSS region transcription start site region 81303
Tssr81304 8 54525709 to 54525717 8 - TSS region transcription start site region 81304
Tssr77367 8 54528025 to 54528031 6 + TSS region transcription start site region 77367
Cpgi20350 8 54529301 to 54530219 918 CpG island CpG island 20350
Tssr81305 8 54529349 to 54529363 14 - TSS region transcription start site region 81305
Tssr81306 8 54529402 to 54529414 12 - TSS region transcription start site region 81306
Tssr77368 8 54529606 to 54529633 27 + TSS region transcription start site region 77368
Tssr81307 8 54529935 to 54529946 11 - TSS region transcription start site region 81307
Tssr81308 8 54529951 to 54530007 56 - TSS region transcription start site region 81308
Tssr77369 8 54550324 to 54550339 15 + TSS region transcription start site region 77369
Asb5 8 54550331 to 54587842 37511 + protein coding gene ankyrin repeat and SOCs box-containing 5
Tssr77370 8 54550384 to 54550397 13 + TSS region transcription start site region 77370
Tssr77371 8 54550423 to 54550439 16 + TSS region transcription start site region 77371
Tssr77372 8 54565867 to 54565886 19 + TSS region transcription start site region 77372
5330439A09Rik 8 54568550 to 54582512 13962 - antisense lncRNA gene RIKEN cDNA 5330439A09 gene
Tssr77373 8 54571430 to 54571469 39 + TSS region transcription start site region 77373
Tssr77374 8 54582629 to 54582632 3 + TSS region transcription start site region 77374
Gm46039 8 54596123 to 54599395 3272 + lncRNA gene predicted gene, 46039
D8Dcr20 8 54597803 to 54597898 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 20
Cpgi20351 8 54600717 to 54600977 260 CpG island CpG island 20351
Tssr77375 8 54600774 to 54600804 30 + TSS region transcription start site region 77375
Spata4 8 54600781 to 54610098 9317 + protein coding gene spermatogenesis associated 4
Tssr77376 8 54600815 to 54600826 11 + TSS region transcription start site region 77376
Wdr17 8 54629611 to 54724518 94907 - protein coding gene WD repeat domain 17
Tssr81309 8 54644696 to 54644702 6 - TSS region transcription start site region 81309
Gm15758 8 54708987 to 54710381 1394 + unclassified non-coding RNA gene predicted gene 15758
Tssr81310 8 54718664 to 54718689 25 - TSS region transcription start site region 81310
Cpgi20352 8 54724187 to 54724571 384 CpG island CpG island 20352
Tssr81311 8 54724317 to 54724373 56 - TSS region transcription start site region 81311
Tssr81312 8 54724474 to 54724494 20 - TSS region transcription start site region 81312
Tssr77377 8 54779522 to 54779583 61 + TSS region transcription start site region 77377
Tssr77378 8 54779590 to 54779610 20 + TSS region transcription start site region 77378
n-R5s98 8 54866261 to 54866379 118 + rRNA gene nuclear encoded rRNA 5S 98
Tssr81313 8 54886964 to 54886999 35 - TSS region transcription start site region 81313
D8Mit246 8 54895810 to 54895935 125 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 246
Tssr77379 8 54954809 to 54954820 11 + TSS region transcription start site region 77379
Tssr77380 8 54954837 to 54954854 17 + TSS region transcription start site region 77380
Gpm6a 8 54954843 to 55060871 106028 + protein coding gene glycoprotein m6a
Tssr77381 8 54954856 to 54954872 16 + TSS region transcription start site region 77381
Tssr77382 8 54954891 to 54954927 36 + TSS region transcription start site region 77382
Tssr77383 8 54954934 to 54954949 15 + TSS region transcription start site region 77383
Tssr77384 8 54954969 to 54954974 5 + TSS region transcription start site region 77384
Tssr77385 8 54954994 to 54955010 16 + TSS region transcription start site region 77385
Tssr77386 8 54955023 to 54955024 1 + TSS region transcription start site region 77386
Tssr77387 8 54955026 to 54955037 11 + TSS region transcription start site region 77387
Tssr77388 8 54955093 to 54955117 24 + TSS region transcription start site region 77388
Tssr77389 8 54955140 to 54955183 43 + TSS region transcription start site region 77389
Tssr77390 8 54955201 to 54955212 11 + TSS region transcription start site region 77390
Tssr77391 8 54955213 to 54955231 18 + TSS region transcription start site region 77391
Tssr77392 8 54955246 to 54955280 34 + TSS region transcription start site region 77392
Gm45263 8 54959819 to 54961193 1374 + unclassified gene predicted gene 45263
Tssr77393 8 54978893 to 54978905 12 + TSS region transcription start site region 77393
Tssr77394 8 54985950 to 54985956 6 + TSS region transcription start site region 77394
Gm45265 8 55005285 to 55007781 2496 + unclassified gene predicted gene 45265
Gm45264 8 55028401 to 55032395 3994 + unclassified gene predicted gene 45264
Gm45262 8 55043059 to 55044521 1462 + unclassified gene predicted gene 45262
A230085B16Rik 8 55055874 to 55057729 1855 + unclassified non-coding RNA gene RIKEN cDNA A230085B16 gene
Tssr77395 8 55059109 to 55059124 15 + TSS region transcription start site region 77395
Tssr77396 8 55059152 to 55059164 12 + TSS region transcription start site region 77396
Tssr2567 8 55059222 to 55059241 19 + TSS region transcription start site region 2567
9330121K16Rik 8 55073249 to 55077134 3885 + unclassified gene RIKEN cDNA 9330121K16 gene
Gm8734 8 55080404 to 55081715 1311 - pseudogene predicted gene 8734
Gm46063 8 55348649 to 55351792 3143 + protein coding gene predicted gene, 46063
Tssr2568 8 55401676 to 55401682 6 - TSS region transcription start site region 2568
Gm36387 8 55423876 to 55424191 315 + pseudogene predicted gene, 36387
Gm20586 8 55532291 to 55532837 546 + pseudogene predicted gene, 20586
Gm36453 8 55552813 to 55553128 315 + pseudogene predicted gene, 36453
Gm18320 8 55659390 to 55659947 557 + pseudogene predicted gene, 18320
Gm45610 8 55777199 to 55777982 783 + pseudogene predicted gene 45610