Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:52496867-54729065

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm45673 8 52554357 to 52554714 357 - pseudogene predicted gene 45673
Gm9685 8 52774131 to 52774668 537 + pseudogene predicted gene 9685
Tssr2566 8 52830563 to 52830564 1 - TSS region transcription start site region 2566
D8Mit230 8 53005594 to 53005718 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 230
Gm23666 8 53006408 to 53006523 115 + snoRNA gene predicted gene, 23666
D8Dcr19 8 53307705 to 53307808 103 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 19
Gm45554 8 53436100 to 53480650 44550 + lincRNA gene predicted gene 45554
Gm39179 8 53436263 to 53446491 10228 + lncRNA gene predicted gene, 39179
Tssr81295 8 53446879 to 53446891 12 - TSS region transcription start site region 81295
Gm39180 8 53478190 to 53480388 2198 + lncRNA gene predicted gene, 39180
Gm27964 8 53493763 to 53493824 61 + snRNA gene predicted gene, 27964
Gm22841 8 53493853 to 53493914 61 + snRNA gene predicted gene, 22841
Cpgi20347 8 53511635 to 53512029 394 CpG island CpG island 20347
Tssr77357 8 53511695 to 53511739 44 + TSS region transcription start site region 77357
Aga 8 53511727 to 53523421 11694 + protein coding gene aspartylglucosaminidase
Tssr77358 8 53511774 to 53511808 34 + TSS region transcription start site region 77358
Tssr77359 8 53511815 to 53511838 23 + TSS region transcription start site region 77359
Gm39181 8 53565595 to 53583539 17944 - lncRNA gene predicted gene, 39181
Neil3 8 53586867 to 53639065 52198 - protein coding gene nei like 3 (E. coli)
Tssr81296 8 53591599 to 53591610 11 - TSS region transcription start site region 81296
Tssr81297 8 53601823 to 53601826 3 - TSS region transcription start site region 81297
Tssr77360 8 53605198 to 53605209 11 + TSS region transcription start site region 77360
Cpgi20348 8 53638468 to 53639160 692 CpG island CpG island 20348
Tssr81298 8 53638945 to 53639021 76 - TSS region transcription start site region 81298
Gm19921 8 53911739 to 53912441 702 + pseudogene predicted gene, 19921
Gm33153 8 54076070 to 54077773 1703 - protein coding gene predicted gene, 33153
Cpgi20349 8 54076781 to 54078070 1289 CpG island CpG island 20349
Tssr77361 8 54077136 to 54077152 16 + TSS region transcription start site region 77361
Tssr77362 8 54077164 to 54077183 19 + TSS region transcription start site region 77362
Tssr77363 8 54077202 to 54077240 38 + TSS region transcription start site region 77363
Tssr77364 8 54077243 to 54077256 13 + TSS region transcription start site region 77364
Tssr77365 8 54077494 to 54077524 30 + TSS region transcription start site region 77365
Vegfc 8 54077532 to 54186454 108922 + protein coding gene vascular endothelial growth factor C
Tssr81299 8 54078000 to 54078023 23 - TSS region transcription start site region 81299
Tssr77366 8 54106954 to 54106958 4 + TSS region transcription start site region 77366
Tssr81300 8 54393647 to 54393656 9 - TSS region transcription start site region 81300
Tssr81301 8 54412291 to 54412327 36 - TSS region transcription start site region 81301
Tssr81302 8 54412341 to 54412360 19 - TSS region transcription start site region 81302
Gm45553 8 54513644 to 54514150 506 - unclassified gene predicted gene 45553
Spcs3 8 54520433 to 54529998 9565 - protein coding gene signal peptidase complex subunit 3 homolog (S. cerevisiae)
Tssr81303 8 54523154 to 54523161 7 - TSS region transcription start site region 81303
Tssr81304 8 54525709 to 54525717 8 - TSS region transcription start site region 81304
Tssr77367 8 54528025 to 54528031 6 + TSS region transcription start site region 77367
Cpgi20350 8 54529301 to 54530219 918 CpG island CpG island 20350
Tssr81305 8 54529349 to 54529363 14 - TSS region transcription start site region 81305
Tssr81306 8 54529402 to 54529414 12 - TSS region transcription start site region 81306
Tssr77368 8 54529606 to 54529633 27 + TSS region transcription start site region 77368
Tssr81307 8 54529935 to 54529946 11 - TSS region transcription start site region 81307
Tssr81308 8 54529951 to 54530007 56 - TSS region transcription start site region 81308
Tssr77369 8 54550324 to 54550339 15 + TSS region transcription start site region 77369
Asb5 8 54550331 to 54587842 37511 + protein coding gene ankyrin repeat and SOCs box-containing 5
Tssr77370 8 54550384 to 54550397 13 + TSS region transcription start site region 77370
Tssr77371 8 54550423 to 54550439 16 + TSS region transcription start site region 77371
Tssr77372 8 54565867 to 54565886 19 + TSS region transcription start site region 77372
5330439A09Rik 8 54568550 to 54582512 13962 - antisense lncRNA gene RIKEN cDNA 5330439A09 gene
Tssr77373 8 54571430 to 54571469 39 + TSS region transcription start site region 77373
Tssr77374 8 54582629 to 54582632 3 + TSS region transcription start site region 77374
Gm46039 8 54596123 to 54599395 3272 + lncRNA gene predicted gene, 46039
D8Dcr20 8 54597803 to 54597898 95 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 20
Cpgi20351 8 54600717 to 54600977 260 CpG island CpG island 20351
Tssr77375 8 54600774 to 54600804 30 + TSS region transcription start site region 77375
Spata4 8 54600781 to 54610098 9317 + protein coding gene spermatogenesis associated 4
Tssr77376 8 54600815 to 54600826 11 + TSS region transcription start site region 77376
Wdr17 8 54629611 to 54724518 94907 - protein coding gene WD repeat domain 17
Tssr81309 8 54644696 to 54644702 6 - TSS region transcription start site region 81309
Gm15758 8 54708987 to 54710381 1394 + unclassified non-coding RNA gene predicted gene 15758
Tssr81310 8 54718664 to 54718689 25 - TSS region transcription start site region 81310
Cpgi20352 8 54724187 to 54724571 384 CpG island CpG island 20352
Tssr81311 8 54724317 to 54724373 56 - TSS region transcription start site region 81311
Tssr81312 8 54724474 to 54724494 20 - TSS region transcription start site region 81312